Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
C1orf170	84808	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	915233	915233	+	RNA	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	C1orf170-68	.	.	.	.	ATTGTGGCTTGGA	.	126	13	93	0	.	0	0	0	0	0
CASZ1	54897	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	10700024	10700024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CASZ1-113	NM_001079843	exon21	c.G4255T	p.A1419S	AGGACGCCGTCTT	.	95	22	80	1	.	0	0	0	0	0
FBXO6	26270	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11728776	11728776	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	FBXO6-226	NM_018438	exon2	c.C61G	p.L21V	AACATCCTGCTGG	.	114	36	105	1	.	47	47	0	0	0
AADACL4	343066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12711237	12711237	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	AADACL4-68	NM_001013630	exon2	c.G264T	p.V88V	ACTTGTGGTGACC	.	120	66	121	0	.	0	0	0	0	0
RHD	6007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	25628090	25628090	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RHD-153	NM_001127691	exon5	c.G714A	p.V238V	TGCCGTGTTCAAC	.	134	123	87	0	.	0	0	0	0	0
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34015918	34015918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CSMD2-103	NM_052896	exon55	c.C8344A	p.H2782N	GGGAGTGAGGCGG	.	186	106	109	0	.	0	0	0	0	0
AGO3	192669	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	36479547	36479547	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_024852	exon11	c.T1304A	p.V435E	ATGGAGTATGGGA	.	366	38	369	2	.	2	2	0	0	0
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	39853737	39853737	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	MACF1-165	NM_012090	exon54	c.G9037C	p.G3013R	ACTCAGGGTCTGG	.	138	42	139	0	.	5	4	1	0	0
ITGB3BP	23421	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	63974218	63974218	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ITGB3BP-90	NM_001206739	exon3	c.A146C	p.D49A	AGACCATCCAACT	.	201	53	292	2	.	10	7	3	0	0
GNG12	55970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	68171150	68171150	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	GNG12-227	NM_018841	exon4	c.C203G	p.T68S	ATGCAAGTTTTTT	.	89	43	73	0	.	40	14	26	0	0
GNAI3	2773	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110125084	110125084	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	GNAI3-228	NM_006496	exon5	c.T487G	p.S163A	AGAATATCCCAGT	.	213	46	210	1	.	55	48	7	0	0
KCNA2	3737	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	111147091	111147091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KCNA2-91	NM_001204269	exon3	c.C314G	p.P105R	TCTAAGGGCACAT	.	73	47	84	1	.	0	0	0	0	0
KCNN3	3782	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154841897	154841897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KCNN3-91	NM_001204087	exon1	c.G544A	p.G182S	CCCCACCGCTATA	.	100	34	64	1	.	0	0	0	0	0
ZBTB7B	51043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154987232	154987232	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ZBTB7B-90	NM_001252406	exon4	c.C198G	p.H66Q	GGGCCACCTATGT	.	80	26	77	0	.	14	5	9	0	0
KLHDC8A	55220	bcgsc.ca	37	1	205306599	205306599	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KLHDC8A-91	NM_018203	exon6	c.C981A	p.C327X	GAGGAGGCAGTTC	.	102	59	106	3	.	0	0	0	0	0
RCOR3	55758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	211462545	211462545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RCOR3-91	NM_001136223	exon8	c.C746A	p.T249N	TCCAAACTAGCAA	.	244	26	181	0	.	19	18	1	0	0
AKT3	10000	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	243800913	243800913	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	AKT3-1423	NM_001206729	exon6	c.G561A	p.K187K	AGTTACCTTTGCA	.	42	6	75	0	.	0	0	0	0	0
OR2C3	81472	broad.mit.edu	37	1	247694872	247694872	+	Silent	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	OR2C3-70	NM_198074	exon2	c.A942T	p.A314A	CTTGCCTGCAGAG	.	150	5	99	0	.	0	0	0	0	0
OPTN	10133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	13160994	13160994	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	OPTN-70	NM_001008212	exon7	c.C733T	p.Q245X	GGGAATCAGAAGG	.	175	100	199	0	.	42	41	1	0	0
KIAA1462	57608	broad.mit.edu;bcgsc.ca	37	10	30336674	30336674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KIAA1462-72	NM_020848	exon2	c.G68A	p.R23H	TCCTCGCGTGATG	.	128	6	116	0	.	0	0	0	0	0
MIR1256	100302155	bcgsc.ca	37	10	74135633	74135633	+	RNA	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	.	.	.	.	GTCACTGAAAAAA	.	74	43	77	0	.	1	0	1	0	0
ZNF518A	9849	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	97917491	97917491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ZNF518A-23	.	.	.	.	CACCAGGCTCACA	.	216	120	218	0	.	2	2	0	0	0
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	135013012	135013012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KNDC1-229	NM_152643	exon15	c.G2809A	p.A937T	TGTGGCGCCATTT	.	192	14	151	0	.	0	0	0	0	0
OR51D1	390038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4661643	4661643	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	OR51D1-68	NM_001004751	exon1	c.A623T	p.N208I	GGGTCAATGTGGT	.	172	74	141	0	.	0	0	0	0	0
EIF4G2	1982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	10820842	10820842	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	EIF4G2-91	NM_001172705	exon20	c.A2454C	p.K818N	AAGAAATTTCTGC	.	120	61	101	0	.	624	339	285	0	0
SPON1	10418	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	14063070	14063070	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SPON1-1	.	.	.	.	GTAGATCATAGAC	.	72	22	48	0	.	0	0	0	0	0
CKAP5	9793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46799004	46799004	+	Silent	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CKAP5-92	NM_001008938	exon23	c.C2847G	p.V949V	TCCAAGGACTGTG	.	104	43	81	0	.	11	7	4	0	0
NUP160	23279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47837537	47837537	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	NUP160-209	NM_015231	exon12	c.T1476C	p.S492S	CAGTTCACTCCAG	.	361	175	264	0	.	14	6	8	0	0
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	48142728	48142728	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PTPRJ-541	NM_001098503	exon4	c.T526G	p.L176V	ACAGGCTTACGTC	.	323	131	282	1	.	11	7	4	0	0
ANKK1	255239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113265705	113265705	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ANKK1-628	NM_178510	exon3	c.A535C	p.I179L	CAGTACATCGAGA	.	192	87	113	0	.	0	0	0	0	0
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	660177	660177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	B4GALNT3-92	NM_173593	exon11	c.C1087T	p.R363C	CTGCAGCGCTACC	.	163	37	105	0	.	0	0	0	0	0
LRTM2	654429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	1940301	1940301	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	LRTM2-135	NM_001039029	exon4	c.A268T	p.N90Y	TTCGCCAACCTCT	.	59	30	47	0	.	0	0	0	0	0
MANSC1	54682	broad.mit.edu	37	12	12483849	12483849	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	MANSC1-90	NM_018050	exon4	c.C408A	p.P136P	TTCCTGGGGTAAC	.	143	4	87	0	.	28	28	0	0	0
WBP11	51729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	14943406	14943406	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	WBP11-92	NM_016312	exon10	c.T1293C	p.P431P	ACCAGGAGGAAGG	.	134	24	97	0	.	54	41	13	0	0
KCNH3	23416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	49944077	49944077	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KCNH3-90	NM_012284	exon10	c.A1883C	p.E628A	CCATGGAGGTGCT	.	93	48	17	0	.	1	1	0	0	0
CSAD	51380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53554015	53554015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CSAD-91	NM_015989	exon14	c.A1136G	p.K379R	ACCACCTTGTCTC	.	120	60	63	0	.	6	4	2	0	0
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	54756649	54756649	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	GPR84-523	NM_020370	exon2	c.C987T	p.A329A	GCTCAGGGCAAAG	.	202	15	153	0	.	2	2	0	0	0
SMARCC2	6601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56578005	56578005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SMARCC2-229	NM_139067	exon6	c.C516A	p.N172K	GGCATTGTTCTTA	.	135	55	136	0	.	30	14	16	0	0
R3HDM2	22864	ucsc.edu;bcgsc.ca	37	12	57674168	57674168	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	R3HDM2-92	NM_014925	exon12	c.A1275G	p.P425P	CAAGGGTGGCTGT	.	144	24	93	2	.	30	25	5	0	0
METTL1	4234	broad.mit.edu;bcgsc.ca	37	12	58165807	58165807	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	METTL1-492	NM_023033	exon1	c.C60T	p.Y20Y	CCGGTAGTAGCGC	.	128	50	71	2	.	22	16	6	0	0
APAF1	317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	99093184	99093184	+	Splice_Site	SNP	A	A	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	APAF1-229	NM_001160	exon17	c.2272-2A>C	.	ATTCAAAGCTTTG	.	58	22	54	0	.	0	0	0	0	0
DAO	1610	broad.mit.edu	37	12	109290784	109290784	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	DAO-92	NM_001917	exon8	c.G615T	p.V205V	ACAGGTGGACGCC	.	105	4	74	0	.	0	0	0	0	0
LHX5	64211	hgsc.bcm.edu	37	12	113901232	113901232	+	Silent	SNP	T	T	C	rs202131487		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	LHX5-90	NM_022363	exon5	c.A972G	p.G324G	CAGCGCTCCCAGC	.	34	14	1	0	.	0	0	0	0	0
CHFR	55743	broad.mit.edu	37	12	133430112	133430112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CHFR-227	NM_001161344	exon11	c.C1313A	p.A438E	TGCGCCGCCTGCC	.	161	4	27	0	.	15	15	0	0	0
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	36383187	36383187	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	DCLK1-826	NM_004734	exon13	c.T1734C	p.Y578Y	CAGGATATAAGTG	.	150	51	93	0	.	5	2	3	0	0
UGGT2	55757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	96684163	96684163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	UGGT2-92	NM_020121	exon2	c.T221C	p.L74S	ATTGCTAATTCTT	.	102	38	103	0	.	9	4	5	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	58	5	16	0	.	15	15	0	0	0
RPGRIP1	57096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	21769308	21769308	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RPGRIP1-140	NM_020366	exon3	c.C402T	p.A134A	CCCTGCCAGCCCC	.	229	57	114	0	.	0	0	0	0	0
OXA1L	5018	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23240479	23240479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	OXA1L-204	NM_005015	exon9	c.T1285A	p.W429R	ACAGGCTGGAAAA	.	82	45	91	1	.	0	0	0	0	0
EFS	10278	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	23828918	23828918	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	EFS-153	NM_005864	exon4	c.C769T	p.L257L	CCAGCAGAGGCAC	.	62	19	50	0	.	0	0	0	0	0
LRR1	122769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	50081041	50081041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	LRR1-227	NM_152329	exon4	c.G1072T	p.V358F	ATTTGTGTTTGTG	.	53	11	61	0	.	8	6	2	0	0
ZC2HC1C	79696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	75537677	75537677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_024643	exon2	c.G401T	p.G134V	GAGTTGGAGTGGA	.	95	31	96	0	.	4	1	3	0	0
KIAA1737	85457	broad.mit.edu	37	14	77580242	77580242	+	Missense_Mutation	SNP	T	T	C	rs74069038		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KIAA1737-90	NM_033426	exon4	c.T781C	p.S261P	TTCGCTTCCCCCG	.	68	18	50	4	T|0.500;C|0.500	3	3	0	0	0
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102478240	102478240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	DYNC1H1-98	NM_001376	exon33	c.T6647C	p.I2216T	CCCAGATCAATCA	.	87	27	80	0	.	19	12	7	0	0
PACS2	23241	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	105833603	105833603	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PACS2-69	NM_001100913	exon5	c.C477T	p.I159I	CAGCATCAAGGAG	.	210	60	148	1	.	32	17	15	0	0
HERC2	8924	broad.mit.edu;ucsc.edu	37	15	28437274	28437274	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	HERC2-234	NM_004667	exon53	c.C8284G	p.R2762G	CAGAACGGCCACA	.	67	5	34	0	.	8	5	3	0	0
TRIM69	140691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	45048565	45048565	+	Splice_Site	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TRIM69-90	NM_080745	exon2	c.7-1G>C	.	TTCCCAGGAGGAG	.	130	61	93	0	.	0	0	0	0	0
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	48748937	48748937	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	FBN1-92	NM_000138	exon44	c.C5319A	p.I1773I	CCCTGGGATCTCC	.	112	44	70	0	.	0	0	0	0	0
CILP	8483	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65494241	65494241	+	Silent	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CILP-97	NM_003613	exon8	c.G1155T	p.V385V	GGACTTCACAGCC	.	109	42	68	1	.	0	0	0	0	0
SLC24A1	9187	bcgsc.ca	37	15	65917018	65917018	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_004727	exon2	c.C600A	p.Y200X	CACTTACGTGCCG	.	141	62	90	2	.	4	1	3	0	0
SV2B	9899	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	91811781	91811781	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SV2B-97	NM_014848	exon10	c.T1319A	p.I440N	CCACAATCAACTT	.	271	21	176	0	.	0	0	0	0	0
PGPEP1L	145814	hgsc.bcm.edu	37	15	99544418	99544418	+	Missense_Mutation	SNP	C	C	T	rs149174294		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_001102612	exon2	c.G19A	p.V7M	TCACCACGAGAGT	.	4	4	0	0	C|0.851;T|0.149	1	1	0	0	0
WFIKKN1	117166	broad.mit.edu	37	16	683832	683832	+	Silent	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	WFIKKN1-90	NM_053284	exon2	c.C1422A	p.G474G	CTTGGGCACCAAG	.	235	8	68	1	.	0	0	0	0	0
RPL3L	6123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	1995884	1995884	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RPL3L-90	NM_005061	exon8	c.G999A	p.L333L	ACCCTTCAGCATG	.	74	5	35	0	.	0	0	0	0	0
PKMYT1	9088	hgsc.bcm.edu	37	16	3025761	3025761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PKMYT1-765	NM_182687	exon4	c.C431T	p.P144L	CGGAATGGTGACA	.	86	33	5	0	.	1	1	0	0	0
NLRC3	197358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3614323	3614323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	NLRC3-96	NM_178844	exon5	c.C615G	p.S205R	CGCCAGGCTGGGC	.	95	32	57	0	.	0	0	0	0	0
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu	37	16	3779018	3779018	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CREBBP-1807	NM_004380	exon31	c.G6030A	p.G2010G	GACGGGCCCGCTC	.	58	18	14	0	.	16	10	6	0	0
METTL22	79091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	8736394	8736394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	METTL22-90	NM_024109	exon9	c.T982C	p.C328R	AATGCCTGCACAG	.	157	65	103	0	.	32	20	12	0	0
ERN2	10595	broad.mit.edu;ucsc.edu	37	16	23713536	23713536	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ERN2-322	NM_033266	exon11	c.G1284A	p.L428L	ACTCCCCAGGGTG	.	80	15	45	1	.	0	0	0	0	0
CETP	1071	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57012127	57012127	+	Missense_Mutation	SNP	G	G	A	rs144949752		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CETP-91	NM_000078	exon11	c.G1106A	p.R369H	TTCCACGCCCAGA	.	198	21	144	1	G|1.000;A|0.000	9	9	0	0	0
ZNF469	84627	broad.mit.edu;ucsc.edu	37	16	88497843	88497843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_001127464	exon2	c.G3881T	p.R1294L	CTGCCCGCCAGCC	.	110	13	70	1	.	0	0	0	0	0
DHRS7C	201140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	9683157	9683157	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_001220493	exon3	c.A466T	p.I156F	ATGTGATGGGGCC	.	108	8	95	0	.	0	0	0	0	0
COX10	1352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	13980322	13980322	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	COX10-226	NM_001303	exon3	c.G448C	p.V150L	CTGCAAGTGTATG	.	161	69	146	0	.	22	9	13	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	388	34	254	27	.	40	10	30	0	0
SLFN12L	100506736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	33807110	33807110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SLFN12L-23	NM_001195790	exon2	c.C119T	p.T40I	CCAAGAGTGACTC	.	103	8	74	0	.	0	0	0	0	0
KRT38	8687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39596920	39596920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KRT38-92	NM_006771	exon1	c.T254G	p.I85S	CCAGGAATGTGGC	.	212	88	109	0	.	0	0	0	0	0
JUP	3728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39925817	39925817	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	JUP-479	NM_021991	exon3	c.G321C	p.E107D	CTGCCCCTCCACC	.	123	27	67	0	.	169	133	36	0	0
ERN1	2081	broad.mit.edu	37	17	62152600	62152600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ERN1-784	NM_001433	exon5	c.C290T	p.P97L	GTAAAAGGAAGTT	.	69	10	63	4	.	0	0	0	0	0
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	65105385	65105385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	HELZ-92	NM_014877	exon29	c.G4336A	p.E1446K	CAGCTTCTGCAGG	.	111	43	105	0	.	11	7	4	0	0
EXOC7	23265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	74081440	74081440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	EXOC7-90	NM_001145297	exon16	c.C1820T	p.S607F	CGGTAGGAGCGCT	.	45	4	30	0	.	93	77	16	0	0
RNF138	51444	broad.mit.edu	37	18	29709106	29709106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RNF138-226	NM_001191324	exon7	c.C694A	p.Q232K	GAAACCCAATACC	.	40	3	59	0	.	5	5	0	0	0
SETBP1	26040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	42533244	42533244	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SETBP1-155	NM_015559	exon4	c.C3939T	p.D1313D	AAAGGACATCCAA	.	144	38	158	0	.	0	0	0	0	0
KIAA1468	57614	broad.mit.edu	37	18	59919898	59919898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KIAA1468-158	NM_020854	exon12	c.C1735A	p.Q579K	TTCAGGCAAATGA	.	67	6	55	0	.	0	0	0	0	0
PTPRS	5802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5286082	5286082	+	Missense_Mutation	SNP	C	C	A	rs200430287	alternate_allele	TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PTPRS-357	NM_130854	exon2	c.G70T	p.V24F	CTCCAACGAGCAG	.	160	81	150	0	C|0.999;T|0.001	5	1	4	0	0
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10610178	10610178	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KEAP1-637	NM_012289	exon2	c.C532T	p.Q178X	CCAGCTGCTGCAC	.	104	91	141	1	.	12	3	9	0	0
BRD4	23476	bcgsc.ca	37	19	15353721	15353721	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	BRD4-767	NM_058243	exon14	c.C3159A	p.P1053P	TGAGTAGGGGTCC	.	96	82	104	2	.	0	0	0	0	0
TSHZ3	57616	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	31769094	31769094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TSHZ3-232	NM_020856	exon2	c.C1605A	p.N535K	GGCCTTGTTGATT	.	125	25	121	1	.	0	0	0	0	0
SLC7A9	11136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	33350841	33350841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SLC7A9-91	NM_001243036	exon8	c.T779C	p.I260T	AGGGGGATCCCGA	.	210	108	185	0	.	117	42	75	0	0
CEBPA	1050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	33793108	33793108	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CEBPA-7558	NM_004364	exon1	c.C213A	p.A71A	GAAGGCGGCCGGG	.	83	30	26	0	.	0	0	0	0	0
CEBPA	1050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	33793120	33793120	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CEBPA-7558	NM_004364	exon1	c.C201A	p.Y67X	GTCGATGTAGGCG	.	84	29	26	0	.	0	0	0	0	0
WTIP	126374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	34991065	34991065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	WTIP-68	NM_001080436	exon8	c.G1184A	p.G395E	AGGAGGGACGCCG	.	41	20	21	0	.	6	2	4	0	0
LSR	51599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35758028	35758028	+	Silent	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	LSR-90	NM_205834	exon9	c.C1305A	p.T435T	AGTCACCTCCCTC	.	161	93	110	0	.	104	19	85	0	0
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36279064	36279064	+	Silent	SNP	C	C	T	rs182833371		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ARHGAP33-229	NM_052948	exon21	c.C3114T	p.P1038P	AGATCCCGGTCCC	.	50	17	43	0	C|0.999;T|0.000	4	3	1	0	0
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40357745	40357745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	FCGBP-98	NM_003890	exon34	c.C15568A	p.L5190M	AGGTCAGCAGGGA	.	199	23	166	0	.	15	15	0	0	0
NUP62	23636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50412996	50412996	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	NUP62-615	NM_153719	exon3	c.G69A	p.T23T	TGTTGCCGTCTTT	.	88	50	82	0	.	32	11	21	0	0
MBOAT7	79143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54687463	54687463	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	MBOAT7-68	NM_001146082	exon5	c.A434T	p.D145V	GGCACGTCGGGCA	.	97	52	101	0	.	40	10	30	0	0
PTPRH	5794	broad.mit.edu	37	19	55716805	55716805	+	Missense_Mutation	SNP	G	G	A	rs200319382		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PTPRH-138	NM_002842	exon4	c.C508T	p.H170Y	TAGTGTGTGCTGT	.	254	7	196	1	.	0	0	0	0	0
KCNS3	3790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	18113163	18113163	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KCNS3-94	NM_002252	exon3	c.G888C	p.R296S	TATGAGGATTTTC	.	220	83	161	0	.	18	6	12	0	0
KHK	3795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27315218	27315218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KHK-115	NM_006488	exon2	c.G111T	p.W37C	GAGATGGCAGCGC	.	65	31	32	0	.	197	89	108	0	0
ERLEC1	27248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	54028861	54028861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ERLEC1-92	NM_015701	exon8	c.C761A	p.S254Y	GAGCATCTCCTGT	.	128	61	122	0	.	0	0	0	0	0
NAGK	55577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	71304704	71304704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	NAGK-115	NM_017567	exon9	c.A920G	p.K307R	AGGGCAAGATTGG	.	99	38	59	0	.	244	150	94	0	0
UGGT1	56886	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	128941262	128941262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	UGGT1-91	NM_020120	exon38	c.G4258T	p.V1420L	TATGTTGTGGATC	.	141	59	140	0	.	39	24	15	0	0
MAP3K19	80122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	135744072	135744072	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_025052	exon7	c.G2370C	p.Q790H	AGGTGTCTGAGCC	.	112	40	80	0	.	0	0	0	0	0
GCA	25801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	163208899	163208899	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	GCA-90	NM_012198	exon3	c.A244C	p.I82L	TCTGGAATTAATG	.	119	58	111	0	.	31	19	12	0	0
XIRP2	129446	broad.mit.edu;bcgsc.ca	37	2	168102112	168102112	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	XIRP2-104	NM_152381	exon9	c.C4210G	p.H1404D	GAATCACATAATA	.	198	82	177	1	.	0	0	0	0	0
SPC25	57405	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	169746011	169746011	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SPC25-226	NM_020675	exon2	c.G19C	p.A7P	AAAGTGCCAGTTC	.	44	18	59	0	.	0	0	0	0	0
METTL5	29081	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	170677784	170677784	+	Splice_Site	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	METTL5-90	NM_014168	exon4	c.225-1G>T	.	CACAACCTATAAA	.	114	39	82	0	.	0	0	0	0	0
NHEJ1	79840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	220022946	220022946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	NHEJ1-227	NM_024782	exon2	c.G139A	p.E47K	CCTGTTCATGCCA	.	112	47	76	0	.	28	12	16	0	0
LOC643387	0	broad.mit.edu;bcgsc.ca	37	2	239140742	239140742	+	RNA	SNP	T	T	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	.	.	.	.	TGTATGTTGTCAA	.	171	81	131	0	.	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29623218	29623218	+	RNA	SNP	A	A	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	FRG1B-22	.	.	.	.	CTCGACAATGGTC	.	927	44	861	24	.	125	104	21	0	0
FRG1B	284802	bcgsc.ca	37	20	29633902	29633902	+	RNA	SNP	C	C	A	rs145072022		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	FRG1B-22	.	.	.	.	AGAGAACCAAATT	.	235	11	307	3	.	0	0	0	0	0
KCNK15	60598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	43378853	43378853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KCNK15-90	NM_022358	exon2	c.G367A	p.V123I	ACGCTGGTCACTT	.	136	40	61	0	.	1	0	1	0	0
EYA2	2139	bcgsc.ca	37	20	45801422	45801422	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	EYA2-523	NM_172110	exon12	c.G1105C	p.G369R	GGCTCTGGCGTGC	.	152	39	90	2	.	7	3	4	0	0
LIPI	149998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	15554119	15554119	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	LIPI-70	NM_198996	exon4	c.G666A	p.T222T	TGCATCCGTGTAA	.	66	18	52	0	.	0	0	0	0	0
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	22906941	22906941	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	NCAM2-94	NM_004540	exon17	c.A2366T	p.N789I	CAGTAAATGAGCC	.	122	35	132	0	.	0	0	0	0	0
PLAC4	191585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	42551431	42551431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_182832	exon1	c.G125A	p.R42K	CGGTGTCTGGGGT	.	179	49	137	0	.	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	NEFH-90	NM_021076	exon4	c.G1933A	p.E645K	AAGGAGGAAGCAA	.	180	9	140	0	.	0	0	0	0	0
CHADL	150356	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41633556	41633556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CHADL-68	NM_138481	exon3	c.A1520G	p.N507S	AAACGGTTGCGTT	.	255	31	109	1	.	4	4	0	0	0
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	51160316	51160316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SHANK3-69	NM_033517	exon21	c.C4013T	p.A1338V	AGTCTGCAGCCGA	.	87	53	30	0	.	5	1	4	0	0
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9475587	9475587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SETD5-70	NM_001080517	exon4	c.A130G	p.N44D	ACTCATAATTATG	.	155	41	168	0	.	3	1	2	0	0
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52428521	52428521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	DNAH1-67	NM_015512	exon67	c.T10667C	p.I3556T	TCTCGATCATGAC	.	115	58	109	0	.	4	0	4	0	0
ABHD6	57406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	58242370	58242370	+	Silent	SNP	A	A	T	rs11544005	alternate_allele	TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ABHD6-92	NM_020676	exon2	c.A57T	p.P19P	CATCCCAATCCTG	.	103	23	106	0	.	31	22	9	0	0
ZNF654	55279	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	88189810	88189810	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ZNF654-69	NM_018293	exon1	c.T1350G	p.I450M	GAAAATTGATACA	.	236	86	223	1	.	1	1	0	0	0
CBLB	868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	105572285	105572285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CBLB-849	NM_170662	exon3	c.G392T	p.R131I	TACATTCTCTCCT	.	135	33	145	0	.	7	4	3	0	0
EAF2	55840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121554190	121554190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	EAF2-90	NM_018456	exon1	c.G58A	p.G20R	AAGTTAGGGGAGA	.	97	9	75	0	.	14	12	2	0	0
PARP14	54625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122436993	122436993	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PARP14-525	NM_017554	exon13	c.C4076G	p.S1359X	AAGGATCAGCCCA	.	185	102	165	0	.	4	4	0	0	0
RBP2	5948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	139195286	139195286	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RBP2-91	NM_004164	exon1	c.A16T	p.N6Y	TTCCATTCTGGTC	.	74	11	76	0	.	0	0	0	0	0
U2SURP	23350	bcgsc.ca	37	3	142762057	142762057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	U2SURP-71	NM_001080415	exon24	c.C2483T	p.S828F	CTGAGTCTAAGTT	.	550	319	591	4	.	20	6	14	0	0
PLD1	5337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	171395429	171395429	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PLD1-660	NM_002662	exon17	c.C1923T	p.T641T	GAATCTGGTTTCC	.	118	31	141	0	.	12	10	2	0	0
RFC4	5984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186508173	186508173	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RFC4-291	NM_181573	exon9	c.A824T	p.D275V	ACTCCATCAATTT	.	144	36	182	0	.	13	9	4	0	0
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	IDUA-91	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC	.	180	85	74	19	.	4	3	1	0	0
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	3162057	3162057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	HTT-281	NM_002111	exon29	c.C3802T	p.R1268C	TTTCTCCGCTCAG	.	181	67	173	0	.	3	0	3	0	0
CCDC149	91050	broad.mit.edu	37	4	24838061	24838061	+	Nonsense_Mutation	SNP	G	G	T	rs189623642	alternate_allele	TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CCDC149-68	NM_173463	exon8	c.C732A	p.Y244X	TACCTTGTATTTG	.	136	3	133	0	G|0.999;A|0.000	0	0	0	0	0
PI4K2B	55300	hgsc.bcm.edu	37	4	25235821	25235821	+	Silent	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PI4K2B-229	NM_018323	exon1	c.C36A	p.S12S	GGCGTCCGCGGAC	.	44	13	7	0	.	4	3	1	0	0
ARAP2	116984	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	36152575	36152575	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ARAP2-93	NM_015230	exon16	c.C2844A	p.I948I	TTCATTGATATTA	.	115	36	121	1	.	1	1	0	0	0
DSPP	1834	bcgsc.ca	37	4	88536999	88536999	+	Missense_Mutation	SNP	A	A	G	rs202222170		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	DSPP-90	NM_014208	exon5	c.A3185G	p.D1062G	GCAGTGACAGCAG	.	317	14	309	0	.	0	0	0	0	0
MMRN1	22915	broad.mit.edu;bcgsc.ca	37	4	90857474	90857474	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	MMRN1-94	NM_007351	exon6	c.A2643C	p.K881N	AGTTAAAAAAGGC	.	148	5	155	0	.	0	0	0	0	0
SYNPO2	171024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	119952707	119952707	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SYNPO2-92	NM_001128934	exon4	c.A2777T	p.N926I	CCTATAATCCTAT	.	78	11	58	0	.	0	0	0	0	0
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	75888702	75888702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	IQGAP2-96	NM_006633	exon9	c.G859A	p.E287K	TATGAAGAACTGC	.	466	78	316	0	.	13	13	0	0	0
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	75888710	75888710	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	IQGAP2-96	NM_006633	exon9	c.G867A	p.L289L	ACTGCTGACACAA	.	484	78	344	0	.	20	20	0	0	0
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	75973147	75973147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	IQGAP2-96	NM_006633	exon28	c.C3632T	p.S1211L	ATATTTCAATTGA	.	95	11	88	0	.	33	33	0	0	0
REEP5	7905	broad.mit.edu;bcgsc.ca	37	5	112257770	112257770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	REEP5-280	NM_005669	exon1	c.G118T	p.G40C	ACCCACCAAGAGC	.	217	81	66	1	.	48	0	48	0	0
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	131007961	131007961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	FNIP1-92	NM_133372	exon14	c.G2176A	p.G726R	CCATTCCTGTGGA	.	109	63	82	0	.	5	3	2	0	0
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176721020	176721020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	NSD1-188	NM_022455	exon23	c.G6651T	p.E2217D	TGGGGAGATCCGT	.	120	46	91	0	.	24	11	13	0	0
CLK4	57396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178050363	178050363	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CLK4-359	NM_020666	exon2	c.G55T	p.G19X	CATGTCCCCAGCT	.	135	60	83	0	.	7	0	7	0	0
PRPF4B	8899	broad.mit.edu;bcgsc.ca	37	6	4060772	4060772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PRPF4B-1308	NM_003913	exon15	c.G2946T	p.Q982H	GGACCAGATTCTG	.	255	7	237	0	.	26	26	0	0	0
ZSCAN23	222696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	28402345	28402345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ZSCAN23-68	NM_001012455	exon4	c.C1067T	p.T356I	TCTCCAGTGTGAA	.	110	61	99	0	.	1	1	0	0	0
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32016288	32016288	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TNXB-90	NM_019105	exon29	c.G9891A	p.A3297A	CCCCTGCGCGTCC	.	173	105	97	0	.	0	0	0	0	0
TNXB	7148	broad.mit.edu;bcgsc.ca	37	6	32063589	32063589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TNXB-90	NM_019105	exon3	c.G2041C	p.E681Q	GCTCTTCCTGCCC	.	291	13	109	0	.	0	0	0	0	0
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43155541	43155541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CUL9-529	NM_015089	exon7	c.A1672G	p.S558G	GAGGGCAGCACTC	.	84	19	84	0	.	9	7	2	0	0
PKHD1	5314	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	51586795	51586795	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PKHD1-603	NM_170724	exon61	c.A10180C	p.I3394L	CTGAAATCTTCAA	.	76	32	92	0	.	0	0	0	0	0
COL21A1	81578	hgsc.bcm.edu;bcgsc.ca	37	6	55933890	55933890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	COL21A1-24	NM_030820	exon22	c.C2045A	p.P682Q	TCTCCTGGGGAAC	.	95	5	84	0	.	0	0	0	0	0
UBE3D	90025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	83767555	83767555	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_198920	exon2	c.A264C	p.K88N	GCCTAATTTTGCT	.	78	39	83	0	.	0	0	0	0	0
COQ3	51805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	99823846	99823846	+	Silent	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	COQ3-91	NM_017421	exon5	c.A699T	p.T233T	TAAAAATGTTTCT	.	79	26	114	0	.	7	5	2	0	0
LATS1	9113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	149997827	149997827	+	Silent	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	LATS1-992	NM_004690	exon6	c.G2640C	p.G880G	GGGATCCCCCCAT	.	71	20	59	0	.	0	0	0	0	0
C6orf99	100130967	bcgsc.ca	37	6	159316252	159316252	+	Splice_Site	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	.	.	.	.	TTGGCAGAACAGG	.	81	24	107	1	.	0	0	0	0	0
RNF216	54476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	5781127	5781127	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RNF216-274	NM_207111	exon4	c.C521G	p.S174X	TGCTCTGATCTGG	.	147	74	139	0	.	12	11	1	0	0
STAG3L4	64940	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	66774599	66774599	+	RNA	SNP	T	T	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	STAG3L4-68	.	.	.	.	TGAGTCTGCACGA	.	92	34	62	0	.	13	0	13	0	0
SEMA3A	10371	broad.mit.edu	37	7	83739849	83739849	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SEMA3A-156	NM_006080	exon4	c.C390T	p.Y130Y	ACAGGCGTACAAG	.	154	5	176	0	.	0	0	0	0	0
AKAP9	10142	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	91632281	91632281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	AKAP9-755	NM_005751	exon8	c.G3050A	p.S1017N	AAGTAAGCTCTTT	.	140	81	160	1	.	0	0	0	0	0
ZNF655	79027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99158261	99158261	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ZNF655-91	NM_024061	exon2	c.C79T	p.L27L	GAGTGTCTGTCCC	.	79	21	69	0	.	13	7	6	0	0
DLD	1738	broad.mit.edu	37	7	107545820	107545820	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	DLD-226	NM_000108	exon7	c.T453C	p.N151N	TGTCAATGGATAT	.	42	3	80	0	.	115	115	0	0	0
SSMEM1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	129856036	129856036	+	Missense_Mutation	SNP	A	A	T	rs144099660	alternate_allele	TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_145268	exon3	c.A461T	p.E154V	GTGAAGAGTCTAA	.	185	48	171	0	A|1.000;C|0.000	0	0	0	0	0
HIPK2	28996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	139258060	139258060	+	Silent	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	HIPK2-785	NM_022740	exon15	c.G3210T	p.P1070P	GGAGTACGGAGCC	.	37	12	12	0	.	8	7	1	0	0
CRISPLD1	83690	ucsc.edu;bcgsc.ca	37	8	75932278	75932278	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CRISPLD1-91	NM_031461	exon12	c.T1208A	p.L403H	AACAGCTCTGTCC	.	115	55	137	2	.	1	0	1	0	0
LRRCC1	85444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	86057651	86057651	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	LRRCC1-90	NM_033402	exon19	c.G3004T	p.E1002X	ATGCGTGAACTTT	.	275	71	335	0	.	12	7	5	0	0
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	113678545	113678545	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CSMD3-1132	NM_198123	exon17	c.A2777C	p.E926A	TCAGCTTCAATCA	.	141	90	145	0	.	0	0	0	0	0
IFNE	338376	ucsc.edu;bcgsc.ca	37	9	21482028	21482028	+	RNA	SNP	G	G	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	IFNE-492	.	.	.	.	TTCACTGAACACA	.	63	17	80	0	.	0	0	0	0	0
PLAA	9373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	26925951	26925951	+	Silent	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PLAA-514	NM_001031689	exon6	c.G741T	p.V247V	TGTTGTCACAAAG	.	81	48	92	0	.	0	0	0	0	0
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35711276	35711276	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TLN1-609	NM_006289	exon30	c.A3995T	p.K1332M	TGACTCTTGAGGT	.	57	21	61	0	.	40	40	0	0	0
ANKRD18A	253650	broad.mit.edu;bcgsc.ca	37	9	38577964	38577964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ANKRD18A-92	NM_147195	exon13	c.A2429T	p.E810V	TCTTTTTCCATAT	.	125	65	106	2	.	0	0	0	0	0
WNK2	65268	broad.mit.edu	37	9	96030146	96030146	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	WNK2-765	NM_006648	exon16	c.A3815C	p.D1272A	GCTCCGACCCAGG	.	162	30	119	26	.	0	0	0	0	0
RNF20	56254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	104302538	104302538	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RNF20-231	NM_019592	exon3	c.G183C	p.M61I	AGAAATGTTGGAT	.	76	48	92	0	.	13	2	11	0	0
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	107573100	107573100	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ABCA1-1016	NM_005502	exon29	c.G4156C	p.E1386Q	ACTGTTCGTTGTA	.	146	24	103	0	.	9	6	3	0	0
RPL7A	6130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	136216489	136216489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RPL7A-90	NM_000972	exon3	c.C208A	p.L70I	GCCATCCTCTATA	.	88	31	80	0	.	1825	1247	577	0	1
LHX3	8022	hgsc.bcm.edu	37	9	139089398	139089398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	LHX3-91	NM_014564	exon6	c.G982A	p.A328T	GCGGGGCGGCGGG	.	12	6	7	0	.	0	0	0	0	0
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	32305751	32305751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	DMD-265	NM_004006	exon43	c.C6185A	p.A2062E	TGCAATGCTGCTG	.	29	28	31	0	.	0	0	0	0	0
BMP15	9210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	50658768	50658768	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	BMP15-132	NM_005448	exon2	c.A340T	p.I114L	TGGCATATACAGA	.	113	108	81	0	.	0	0	0	0	0
ATRX	546	bcgsc.ca	37	X	76777834	76777834	+	Silent	SNP	C	C	A	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ATRX-248	NM_000489	exon32	c.G6882T	p.G2294G	ATTGGTCCCAGTT	.	118	106	101	3	.	25	0	25	0	0
MAST2	23139	hgsc.bcm.edu;bcgsc.ca	37	1	46496701	46496702	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	MAST2-581	NM_015112	exon23	c.2731_2732del	p.911_911del	.	.	99	34	111	0	.	0	0	0	0	0
PCSK9	255738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	55529096	55529096	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PCSK9-93	NM_174936	exon12	c.1918delG	p.G640fs	.	.	232	129	177	0	.	0	0	0	0	0
TYSND1	219743	hgsc.bcm.edu	37	10	71905802	71905819	+	In_Frame_Del	DEL	CTCTCAGTTGATCCGCCT	CTCTCAGTTGATCCGCCT	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	CTCTCAGTTGATCCGCCT	CTCTCAGTTGATCCGCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TYSND1-135	NM_173555	exon1	c.524_541del	p.175_181del	.	.	112	32	24	0	.	0	0	0	0	0
FAM186A	121006	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	50748961	50748961	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	FAM186A-68	NM_001145475	exon4	c.1654delC	p.R552fs	.	.	141	53	129	0	.	0	0	0	0	0
MLEC	9761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	121132908	121132908	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	MLEC-91	NM_014730	exon4	c.602delA	p.D201fs	.	.	162	72	123	0	.	0	0	0	0	0
PPP2R5E	5529	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	63881922	63881922	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PPP2R5E-658	NM_006246	exon5	c.485delT	p.L162fs	.	.	95	51	113	0	.	0	0	0	0	0
MIR641	693226	hgsc.bcm.edu;bcgsc.ca	37	19	40788466	40788466	+	RNA	DEL	A	A	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	.	.	.	.	.	.	56	17	47	0	.	0	0	0	0	0
ZNF814	730051	bcgsc.ca	37	19	58385280	58385281	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_001144989	exon3	c.1477_1478del	p.493_493del	CCACACTGATAAG	.	125	12	130	0	.	0	0	0	0	0
RAPH1	65059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	204304774	204304775	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RAPH1-1151	NM_213589	exon14	c.3138_3139del	p.1046_1047del	.	.	79	37	75	0	.	0	0	0	0	0
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	220354060	220354064	+	Frame_Shift_Del	DEL	TCTTC	TCTTC	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	TCTTC	TCTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SPEG-383	NM_005876	exon36	c.8320_8324del	p.2774_2775del	.	.	61	25	54	0	.	0	0	0	0	0
TWF2	11344	broad.mit.edu;bcgsc.ca	37	3	52265541	52265541	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TWF2-757	NM_007284	exon4	c.297delG	p.M99fs	GTACAGCATCTTC	.	29	7	52	0	.	0	0	0	0	0
TWF2	11344	broad.mit.edu;bcgsc.ca	37	3	52265543	52265555	+	Frame_Shift_Del	DEL	TCTTCAGCCGCAC	TCTTCAGCCGCAC	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	TCTTCAGCCGCAC	TCTTCAGCCGCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TWF2-757	NM_007284	exon4	c.283_295del	p.95_99del	ACAGCATCTTCAG	.	29	7	50	0	.	0	0	0	0	0
ZBTB38	253461	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	141162052	141162058	+	Frame_Shift_Del	DEL	TTCGGAT	TTCGGAT	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	TTCGGAT	TTCGGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ZBTB38-25	NM_001080412	exon8	c.822_828del	p.274_276del	.	.	65	14	74	0	.	0	0	0	0	0
RCHY1	25898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	76416940	76416940	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RCHY1-228	NM_001008925	exon6	c.503delT	p.L168fs	.	.	221	125	282	0	.	0	0	0	0	0
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	38818063	38818080	+	In_Frame_Del	DEL	ATAAAAATAATGCAGCGA	ATAAAAATAATGCAGCGA	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	ATAAAAATAATGCAGCGA	ATAAAAATAATGCAGCGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	DNAH8-615	NM_001206927	exon38	c.5236_5253del	p.1746_1751del	.	.	65	25	89	0	.	0	0	0	0	0
HECA	51696	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	139487930	139487930	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	HECA-90	NM_016217	exon2	c.781delG	p.G261fs	.	.	66	21	75	0	.	0	0	0	0	0
RBAK	57786	hgsc.bcm.edu;bcgsc.ca	37	7	5104550	5104550	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RBAK-653	NM_001204456	exon6	c.1463delG	p.S488fs	.	.	105	58	114	0	.	0	0	0	0	0
VSTM2A	222008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	54612346	54612346	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_182546	exon2	c.111delG	p.T37fs	.	.	167	50	128	0	.	0	0	0	0	0
RUSC2	9853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	35547875	35547875	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RUSC2-91	NM_014806	exon2	c.1357delG	p.V453fs	.	.	86	53	76	0	.	0	0	0	0	0
TLN1	7094	broad.mit.edu	37	9	35699091	35699097	+	Frame_Shift_Del	DEL	CAGCTCC	CAGCTCC	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	CAGCTCC	CAGCTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TLN1-609	NM_006289	exon52	c.6931_6937del	p.2311_2313del	CGGCTGCAGCTCC	.	53	9	51	0	.	0	0	0	0	0
OFD1	8481	hgsc.bcm.edu;bcgsc.ca	37	X	13762547	13762547	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	OFD1-108	NM_003611	exon6	c.426delT	p.H142fs	.	.	290	96	225	0	.	0	0	0	0	0
UBQLN2	29978	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	56592091	56592092	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	UBQLN2-131	NM_013444	exon1	c.1785_1786del	p.595_596del	.	.	167	146	106	0	.	0	0	0	0	0
UPRT	139596	hgsc.bcm.edu;bcgsc.ca	37	X	74494317	74494318	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	UPRT-130	NM_145052	exon1	c.228_229del	p.76_77del	.	.	146	23	82	0	.	0	0	0	0	0
STAT5A	6776	broad.mit.edu	37	17	40452261	40452262	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	STAT5A-846	NM_003152	exon8	c.795_796insG	p.G265fs	GAACGGCGGGCCC	.	236	9	77	0	.	0	0	0	0	0
HPS3	84343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	148857880	148857881	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	HPS3-158	NM_032383	exon2	c.307_308insGT	p.R103fs	.	.	131	30	145	0	.	0	0	0	0	0
RFC1	5981	bcgsc.ca	37	4	39306550	39306551	+	Splice_Site	INS	-	-	AAAAAA	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RFC1-230	NM_002913	exon16	c.1996-2->TTTTTT	.	AACTCCTAATCAA	.	33	6	53	0	.	0	0	0	0	0
TJP2	9414	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	71869284	71869285	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TJP2-115	NM_001170416	exon23	c.3660_3661insT	p.E1220fs	.	.	78	21	79	0	.	0	0	0	0	0
RANBP2	5903	bcgsc.ca	37	2	109382102	109382103	+	Missense_Mutation	DNP	AC	AC	GT	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RANBP2-675	NM_006267	exon20	c.C5108T	p.T1703V	TTTCAACACCTGC	.	944	350	732	6	.	0	0	0	0	0