Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
GNB1	2782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1720557	1720557	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GNB1-227	NM_002074	exon10	c.T851G	p.L284R	AGGAGGAGGCGCC	.	145	67	143	0	.	140	97	43	0	0
HES3	390992	hgsc.bcm.edu	37	1	6305201	6305201	+	Missense_Mutation	SNP	A	A	C	rs188463518		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	HES3-514	NM_001024598	exon4	c.A195C	p.Q65H	CGAGCAACCGTCG	.	21	9	3	0	A|0.967;C|0.033	0	0	0	0	0
DNAJC16	23341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15855696	15855696	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	DNAJC16-226	NM_015291	exon2	c.A96C	p.R32S	ATACAGAGTCCTA	.	120	47	106	0	.	0	0	0	0	0
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19500887	19500887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	UBR4-612	NM_020765	exon22	c.C2908A	p.L970M	CTGTCAGTGCAGC	.	37	11	52	0	.	3	3	0	0	0
USP48	84196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22073615	22073615	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	USP48-659	NM_001032730	exon8	c.T936C	p.N312N	GTAGGTATTCAGC	.	18	5	18	0	.	2	0	2	0	0
MECR	51102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	29520638	29520638	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MECR-91	NM_016011	exon10	c.C1018G	p.L340V	CTGTGAGCTGGCC	.	96	30	67	0	.	65	22	43	0	0
SMAP2	64744	ucsc.edu;bcgsc.ca	37	1	40839876	40839876	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	SMAP2-68	NM_022733	exon1	c.T84A	p.C28X	GTTTTGTGCAGAT	.	575	220	366	2	.	1	1	0	0	0
PTPRF	5792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44083552	44083552	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	PTPRF-232	NM_002840	exon25	c.C4341T	p.V1447V	TGTGGTCATGATG	.	330	114	263	1	.	32	18	14	0	0
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62271194	62271194	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	INADL-94	NM_176877	exon13	c.A1624G	p.M542V	GAAGTAATGGTAT	.	73	25	54	0	.	0	0	0	0	0
PRMT6	55170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	107599742	107599742	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	PRMT6-90	NM_018137	exon1	c.C405T	p.V135V	GCACGTCCTGCCG	.	24	8	20	0	.	2	2	0	0	0
CRNN	49860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152384603	152384603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CRNN-93	NM_016190	exon2	c.T107C	p.L36P	TCCAAGAGTCTTT	.	170	74	136	0	.	0	0	0	0	0
INTS3	65123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153735733	153735733	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	INTS3-93	NM_023015	exon16	c.A1661T	p.H554L	GCTTCCACCCTAT	.	179	52	171	1	.	52	20	32	0	0
DENND4B	9909	hgsc.bcm.edu	37	1	153907287	153907287	+	Missense_Mutation	SNP	G	G	C	rs199597671		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	DENND4B-69	NM_014856	exon18	c.C2722G	p.Q908E	GCTGCTGCTGCTG	.	90	9	45	0	.	4	4	0	0	0
DENND4B	9909	broad.mit.edu	37	1	153907294	153907294	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	DENND4B-69	NM_014856	exon18	c.G2715A	p.Q905Q	CTGCTGCTGCTGC	.	101	0	78	0	.	809	808	0	0	1
DENND4B	9909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	153907297	153907297	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	DENND4B-69	NM_014856	exon18	c.G2712A	p.Q904Q	CTGCTGCTGCTGC	.	100	20	80	0	.	663	656	7	0	0
KIAA0907	22889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155903553	155903553	+	Silent	SNP	C	C	G	rs147323254		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	KIAA0907-90	NM_014949	exon2	c.G126C	p.G42G	ACTTCCCCCACTG	.	52	15	35	0	C|1.000;G|0.000	2	2	0	0	0
HDGF	3068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156713547	156713547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	HDGF-226	NM_001126050	exon5	c.G661A	p.G221S	CAGAGCCGGGCTC	.	63	33	28	0	.	61	46	15	0	0
IPO9	55705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201842054	201842054	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	IPO9-228	NM_018085	exon20	c.A2675C	p.D892A	GCATGGATGAGGG	.	181	78	180	0	.	23	17	6	0	0
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	214813548	214813548	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CENPF-567	NM_016343	exon12	c.A1867T	p.K623X	TGTTGGAAAAGTG	.	51	21	64	0	.	0	0	0	0	0
EPRS	2058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	220154162	220154162	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	EPRS-92	NM_004446	exon25	c.C3491G	p.T1164S	TCACGAGTACGTA	.	207	80	202	0	.	6	3	3	0	0
C1orf65	164127	hgsc.bcm.edu	37	1	223567036	223567036	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	C1orf65-91	NM_152610	exon1	c.C219T	p.R73R	CAGGCGCGGGTGC	.	50	17	1	0	.	0	0	0	0	0
NLRP3	114548	ucsc.edu;bcgsc.ca	37	1	247588675	247588675	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	NLRP3-674	NM_183395	exon3	c.C1930T	p.Q644X	TTCGTGCAAAGGG	.	209	73	170	3	.	0	0	0	0	0
OR2M5	127059	broad.mit.edu;bcgsc.ca	37	1	248309355	248309355	+	Silent	SNP	G	G	A	rs201158893		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	OR2M5-71	NM_001004690	exon1	c.G906A	p.R302R	ACTCAGGAAAGTG	.	175	8	137	0	G|0.999;A|0.001	0	0	0	0	0
VIM	7431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	17278345	17278345	+	Silent	SNP	T	T	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	VIM-291	NM_003380	exon9	c.T1326G	p.L442L	GACACTTCTGATT	.	91	39	75	0	.	5224	2551	2669	1	3
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	24873742	24873742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ARHGAP21-235	NM_020824	exon26	c.G5476A	p.G1826R	TCTCCCCGCTCTG	.	101	53	93	0	.	6	4	2	0	0
RBP3	5949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	48388918	48388918	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	RBP3-153	NM_002900	exon1	c.C1960G	p.P654A	CCTCTGGCCGAGC	.	102	43	58	0	.	0	0	0	0	0
ERCC6	2074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	50681040	50681040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ERCC6-1153	NM_000124	exon15	c.C2744A	p.T915N	CCCACCCGCGTGG	.	231	92	224	0	.	0	0	0	0	0
CSTF2T	23283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	53458361	53458361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CSTF2T-91	NM_015235	exon1	c.G949A	p.G317R	CGGGTCCGCGAGG	.	64	14	59	0	.	4	0	4	0	0
COL13A1	1305	hgsc.bcm.edu	37	10	71562297	71562297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	COL13A1-91	NM_080802	exon1	c.C118T	p.P40S	CGGCTGCCGAGTC	.	17	4	0	0	.	0	0	0	0	0
ZMIZ1	57178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	81037038	81037038	+	Silent	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ZMIZ1-292	NM_020338	exon8	c.C381G	p.P127P	GCAGCCCCCTCTC	.	53	5	49	0	.	4	4	0	0	0
RNLS	55328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	90342858	90342858	+	Silent	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	RNLS-91	NM_001031709	exon1	c.T90G	p.L30L	CACAGCAAGGTAC	.	164	57	121	0	.	12	0	12	0	0
NOC3L	64318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	96121495	96121495	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	NOC3L-91	NM_022451	exon2	c.A144G	p.K48K	CCTTAGTTTCCTC	.	79	27	93	0	.	0	0	0	0	0
GPAM	57678	ucsc.edu;bcgsc.ca	37	10	113920407	113920407	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GPAM-92	NM_001244949	exon16	c.T1714A	p.Y572N	TGCTGTAGAAGTT	.	251	107	237	2	.	0	0	0	0	0
PDZD8	118987	hgsc.bcm.edu	37	10	119134718	119134718	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	PDZD8-90	NM_173791	exon1	c.C21A	p.I7I	CGCCAGGATCATG	.	59	38	10	0	.	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093099	1093099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MUC2-90	NM_002457	exon30	c.C4918A	p.P1640T	GTGACCCCAACCC	.	132	3	109	0	.	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093376	1093376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MUC2-90	NM_002457	exon30	c.C5195T	p.P1732L	TGACCCCAACCCC	.	140	5	140	2	.	0	0	0	0	0
ZFP91	80829	hgsc.bcm.edu	37	11	58346868	58346868	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ZFP91-91	NM_001197051	exon1	c.G114A	p.A38A	GGTCGCGGCGGCG	.	15	8	0	0	.	0	0	0	0	0
ATG2A	23130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64681557	64681557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ATG2A-69	NM_015104	exon3	c.G483T	p.E161D	ACCAGTCTCAATG	.	154	54	129	0	.	0	0	0	0	0
FOLR2	2350	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	71931920	71931920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	FOLR2-290	NM_001113535	exon3	c.C157A	p.P53T	TGCAGTCCCTGGA	.	105	37	103	2	.	0	0	0	0	0
LIPT2	387787	hgsc.bcm.edu	37	11	74204479	74204479	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	LIPT2-68	NM_001144869	exon1	c.C270A	p.T90T	GTGGAAGGTGGCC	.	6	6	0	0	.	1	0	1	0	0
BARX2	8538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	129321185	129321185	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	BARX2-90	NM_003658	exon4	c.T728A	p.L243H	AGGAGCTCTGTGA	.	134	53	143	0	.	3	1	2	0	0
GLS2	27165	ucsc.edu	37	12	56865334	56865334	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GLS2-91	NM_013267	exon18	c.T1746C	p.S582S	AGTTTCAGAGAGT	.	148	2	137	1	.	2	1	1	0	0
SHMT2	6472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57624649	57624649	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	SHMT2-91	NM_005412	exon2	c.C97G	p.Q33E	GCAGCCCAGACTC	.	402	161	346	0	.	7	4	3	0	0
FAM216A	29902	hgsc.bcm.edu	37	12	110906786	110906786	+	Missense_Mutation	SNP	C	C	T	rs202079205		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	.	NM_013300	exon1	c.C106T	p.P36S	GCAGAGCCGCCCG	.	22	15	0	0	.	1	1	0	0	0
TPCN1	53373	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113715129	113715129	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	TPCN1-93	NM_001143819	exon13	c.A1360C	p.T454P	TATCTTACCTTCA	.	60	19	84	1	.	23	10	13	0	0
CLYBL	171425	hgsc.bcm.edu	37	13	100258999	100258999	+	Missense_Mutation	SNP	C	C	T	rs200020595		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CLYBL-90	NM_206808	exon1	c.C50T	p.A17V	CGGCGGCGCTGCT	.	16	12	0	0	.	0	0	0	0	0
MYH7	4625	ucsc.edu;bcgsc.ca	37	14	23898982	23898982	+	Splice_Site	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MYH7-94	NM_000257	exon13	c.1138+2T>C	.	CCTCCCACCTTCA	.	41	4	40	0	.	0	0	0	0	0
LGALS3	3958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55604955	55604955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	LGALS3-514	NM_002306	exon3	c.C211T	p.P71S	GCTTATCCCGGAG	.	78	29	61	0	.	130	95	35	0	0
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68268851	68268851	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ZFYVE26-162	NM_015346	exon10	c.C1584A	p.L528L	CTCAGAGAGGCTG	.	188	71	128	0	.	0	0	0	0	0
GPR65	8477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	88478074	88478074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GPR65-90	NM_003608	exon2	c.G883A	p.E295K	GTAACCGAAACAG	.	185	10	204	0	.	13	13	0	0	0
PPP4R4	57718	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94733352	94733352	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	PPP4R4-94	NM_058237	exon23	c.T2435A	p.V812E	CTTCTGTGCTTTC	.	63	20	52	1	.	0	0	0	0	0
CEP170B	283638	hgsc.bcm.edu	37	14	105350539	105350539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	.	NM_001112726	exon9	c.C1423T	p.R475W	GAGGAACGGCTGG	.	8	4	0	0	.	5	2	3	0	0
NPAP1	23742	hgsc.bcm.edu	37	15	24923447	24923447	+	Silent	SNP	T	T	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	.	NM_018958	exon1	c.T2433A	p.S811S	TGCCTCTGCAGCA	.	69	4	50	0	.	0	0	0	0	0
OTUD7A	161725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	31818596	31818596	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	OTUD7A-502	NM_130901	exon6	c.C828T	p.S276S	CGGCTCGCTGGAG	.	22	5	25	0	.	0	0	0	0	0
C15orf53	400359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	38988831	38988831	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	C15orf53-492	NM_207444	exon1	c.A23C	p.E8A	CCCAAGAGGACCT	.	159	46	134	0	.	0	0	0	0	0
DUOX1	53905	broad.mit.edu	37	15	45427438	45427438	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	DUOX1-142	NM_017434	exon6	c.A444G	p.R148R	CCAGAGAAGCCGC	.	178	9	78	3	.	0	0	0	0	0
SLCO3A1	28232	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	92647568	92647568	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	SLCO3A1-91	NM_013272	exon4	c.C805A	p.L269M	GGCTTTCTGCTCT	.	82	26	66	1	.	1	1	0	0	0
WDR90	197335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	707787	707787	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	WDR90-92	NM_145294	exon21	c.C2499T	p.P833P	TGCCCCCGCGAGC	.	281	89	35	0	.	3	3	0	0	0
VASN	114990	hgsc.bcm.edu	37	16	4432672	4432672	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	VASN-68	NM_138440	exon2	c.T1794C	p.C598C	CTACTGTGTGCGG	.	19	4	2	0	.	30	17	13	0	0
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31414951	31414951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ITGAD-226	NM_005353	exon7	c.G689A	p.G230D	CCACGGGCATCCT	.	157	59	143	0	.	1	1	0	0	0
ARMC5	79798	hgsc.bcm.edu	37	16	31475859	31475859	+	Silent	SNP	C	C	T	rs115663676		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ARMC5-24	NM_024742	exon4	c.C1515T	p.R505R	CCAACGCACTCCG	.	13	12	0	0	C|0.992;T|0.008	5	0	4	1	0
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	47622955	47622955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	PHKB-154	NM_000293	exon10	c.G1010A	p.G337E	GAGATGGGTATAG	.	107	27	69	0	.	4	2	2	0	0
RBL2	5934	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	53514563	53514563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	RBL2-841	NM_005611	exon20	c.G2966A	p.R989H	CTACTCGCCTCAC	.	289	72	229	1	.	18	12	6	0	0
PIEZO1	9780	hgsc.bcm.edu	37	16	88800408	88800408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	.	NM_001142864	exon17	c.G2235T	p.Q745H	CTGCTGCTGATGC	.	159	16	88	0	.	0	0	0	0	0
DBNDD1	79007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	90075270	90075270	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	DBNDD1-90	NM_024043	exon3	c.A301T	p.T101S	TGTCGGTGAGCTC	.	119	28	61	0	.	30	14	16	0	0
ZNF594	84622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	5086862	5086862	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ZNF594-71	NM_032530	exon2	c.G690C	p.Q230H	GATTCTCTGGTGC	.	68	32	73	0	.	0	0	0	0	0
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26971163	26971163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	KIAA0100-93	NM_014680	exon2	c.G111T	p.K37N	CTGCAGCTTCCGC	.	77	25	90	0	.	0	0	0	0	0
NUFIP2	57532	hgsc.bcm.edu;bcgsc.ca	37	17	27614566	27614566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	NUFIP2-138	NM_020772	exon2	c.T446C	p.I149T	GTTTTAATTCCTG	.	67	4	60	0	.	0	0	0	0	0
KLHL11	55175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40011371	40011371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	KLHL11-90	NM_018143	exon2	c.A748G	p.R250G	AGTCTCTAATGAG	.	61	33	64	0	.	0	0	0	0	0
KAT2A	2648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40269761	40269761	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	KAT2A-523	NM_021078	exon9	c.C1363G	p.P455A	CCATGGGGATGTC	.	132	53	107	0	.	15	9	6	0	0
KAT7	11143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	47869395	47869395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	.	NM_001199158	exon2	c.G163A	p.G55R	TCTCAAGGTAAAA	.	36	11	25	0	.	0	0	0	0	0
CELF5	60680	hgsc.bcm.edu	37	19	3285978	3285978	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CELF5-92	NM_021938	exon10	c.A1141T	p.S381C	GCGCACAGCGTCC	.	67	37	4	0	.	0	0	0	0	0
ATP13A1	57130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19758062	19758062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ATP13A1-138	NM_020410	exon22	c.A2981G	p.N994S	AGGGCATTGAGCG	.	99	19	63	0	.	87	67	20	0	0
GRAMD1A	57655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35506763	35506763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GRAMD1A-90	NM_020895	exon11	c.C1105T	p.R369C	TCCGGCCGCCTCC	.	106	43	93	0	.	22	9	13	0	0
RSPH6A	81492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46305454	46305454	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	RSPH6A-91	NM_030785	exon4	c.G1722C	p.E574D	TGCCTTCTCTTCC	.	139	50	107	0	.	0	0	0	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48183660	48183660	+	Silent	SNP	G	G	A	rs145963832		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GLTSCR1-48	NM_015711	exon6	c.G1233A	p.L411L	GGTGCTGTCGGGC	.	9	7	0	0	G|0.985;A|0.015	1	1	0	0	0
GLTSCR1	29998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	48183987	48183987	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GLTSCR1-48	NM_015711	exon6	c.G1560T	p.L520L	GAACCTGGCGGGC	.	108	42	25	0	.	0	0	0	0	0
SBK2	646643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56047489	56047489	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	SBK2-68	NM_001101401	exon2	c.T173G	p.V58G	TCGTCCACCTCGG	.	124	40	97	1	.	0	0	0	0	0
MXD1	4084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	70165384	70165384	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MXD1-226	NM_002357	exon6	c.C634G	p.Q212E	AAGCTGCAGGACA	.	335	22	328	0	.	3	3	0	0	0
RGPD4	285190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	108488583	108488583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	RGPD4-2	NM_182588	exon20	c.A4123G	p.K1375E	CAATGGAAAGAAA	.	290	198	237	1	.	0	0	0	0	0
SP5	389058	hgsc.bcm.edu	37	2	171572792	171572792	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	SP5-90	NM_001003845	exon2	c.G75A	p.P25P	CTCCCCGGACCTG	.	5	5	1	0	.	0	0	0	0	0
FZD7	8324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	202900342	202900342	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	FZD7-659	NM_003507	exon1	c.C972G	p.Y324X	TGGCTACCGCACG	.	217	67	179	0	.	0	0	0	0	0
FAM117B	150864	hgsc.bcm.edu	37	2	203500481	203500481	+	Silent	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	FAM117B-91	NM_173511	exon1	c.A571C	p.R191R	GAGAAGAGGAGCC	.	5	5	0	0	.	4	1	3	0	0
RPE	6120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	210881324	210881324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	RPE-90	NM_199229	exon4	c.G436A	p.G146R	GAACCGGGGTTTG	.	159	118	177	0	.	19	0	19	0	0
CUL3	8452	bcgsc.ca	37	2	225449679	225449679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CUL3-229	NM_003590	exon1	c.G48A	p.M16I	GATCCGCATCTTG	.	128	90	79	2	.	0	0	0	0	0
VSX1	30813	hgsc.bcm.edu	37	20	25062342	25062342	+	Missense_Mutation	SNP	G	G	T	rs6050307		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	VSX1-90	NM_014588	exon1	c.C391A	p.R131S	TCTGGCGGCCGAG	.	19	10	1	0	G|0.959;T|0.041	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29623218	29623218	+	RNA	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	FRG1B-22	.	.	.	.	CTCGACAATGGTC	.	985	40	882	20	.	55	41	14	0	0
ZBTB46	140685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	62378613	62378613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ZBTB46-154	NM_025224	exon5	c.C1440A	p.S480R	GACGCGGCTGCAC	.	138	52	64	0	.	0	0	0	0	0
RRP7A	27341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42912080	42912080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	RRP7A-91	NM_015703	exon3	c.G279T	p.K93N	GTCCGGCTTCTCC	.	121	50	119	0	.	37	26	11	0	0
BHLHE40	8553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	5024970	5024970	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	BHLHE40-91	NM_003670	exon5	c.A832C	p.I278L	GGCGCAATTAAGC	.	96	38	82	0	.	94	56	38	0	0
XPC	7508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	14188804	14188804	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	XPC-662	NM_004628	exon15	c.C2590G	p.R864G	CGTAGCGACGCTT	.	110	8	60	0	.	1	1	0	0	0
DAG1	1605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49568609	49568609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	DAG1-92	NM_001177642	exon4	c.T665C	p.L222P	TAGAGCTTCACAA	.	116	47	124	0	.	4	4	0	0	0
MAPKAPK3	7867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50685441	50685441	+	Silent	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MAPKAPK3-1423	NM_004635	exon11	c.C1113G	p.G371G	GGCAGGCAGCTCC	.	260	110	246	1	.	44	21	23	0	0
MAGI1	9223	hgsc.bcm.edu	37	3	65425597	65425597	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MAGI1-661	NM_001033057	exon9	c.G1227A	p.Q409Q	TTGCTGCTGCTGT	.	41	7	38	0	.	0	0	0	0	0
ABHD10	55347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	111710242	111710242	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ABHD10-90	NM_018394	exon5	c.A595C	p.M199L	GTAGAGATGAAAG	.	151	34	154	0	.	24	13	11	0	0
GP9	2815	broad.mit.edu	37	3	128780901	128780901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GP9-90	NM_000174	exon3	c.G319T	p.A107S	CCCGAGGCCCTGC	.	162	12	37	2	.	0	0	0	0	0
ARRDC3	57561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	90669948	90669948	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ARRDC3-136	NM_020801	exon6	c.T1016G	p.L339R	TCAGGAAGTGATA	.	113	33	105	0	.	1	0	1	0	0
PAM	5066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	102285295	102285295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	PAM-68	NM_138822	exon9	c.C698T	p.A233V	TCTTTGCCTATAG	.	259	24	264	0	.	3	3	0	0	0
PCDHGB6	56100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140788348	140788348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	.	NM_032100	exon1	c.G579T	p.E193D	CCCAGAGTTATCT	.	53	22	38	0	.	0	0	0	0	0
SPINK1	6690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	147207646	147207646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	SPINK1-90	NM_003122	exon3	c.C133T	p.P45S	AGACAGGGTCATA	.	114	24	106	0	.	0	0	0	0	0
FNDC9	408263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156770121	156770121	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	FNDC9-68	NM_001001343	exon2	c.G424T	p.E142X	GCGGCTCATGGCA	.	136	43	116	0	.	0	0	0	0	0
GABRB2	2561	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	160886718	160886718	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GABRB2-91	NM_021911	exon5	c.A370T	p.N124Y	TATCGTTCAGGAA	.	252	111	221	1	.	0	0	0	0	0
FAM65B	9750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	24843494	24843494	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	FAM65B-91	NM_014722	exon14	c.G1516C	p.E506Q	GCTCCTCTGGGTC	.	99	33	83	0	.	2	2	0	0	0
HLA-E	3133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30459405	30459405	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	HLA-E-516	NM_005516	exon5	c.T978C	p.A326A	TGCTGCTGTGATA	.	100	27	100	0	.	373	205	168	0	0
C6orf10	10665	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32261299	32261299	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	C6orf10-91	.	.	.	.	CTCTTCTTTACTT	.	122	47	103	1	.	0	0	0	0	0
PRICKLE4	29964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	41751890	41751890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	PRICKLE4-22	NM_013397	exon4	c.G154A	p.G52S	AGCTTGGGTTCCC	.	169	58	154	0	.	7	7	0	0	0
CASP8AP2	9994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90578032	90578032	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CASP8AP2-24	NM_001137667	exon8	c.G5023C	p.V1675L	CACTCTGTTGGGG	.	62	29	75	0	.	1	0	1	0	0
NFE2L3	9603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	26224503	26224503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	NFE2L3-94	NM_004289	exon4	c.G1185T	p.M395I	CTTAATGTCATTG	.	80	29	93	0	.	8	3	5	0	0
NAMPT	10135	broad.mit.edu	37	7	105903928	105903928	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	NAMPT-577	NM_005746	exon7	c.A879C	p.E293D	TAGATCTTCACCC	.	169	14	199	1	.	22	18	4	0	0
FLNC	2318	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	128494117	128494117	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	FLNC-141	NM_001458	exon40	c.G6574C	p.E2192Q	CGCACGGAGATCA	.	295	107	162	3	.	0	0	0	0	0
STRIP2	57464	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	129104562	129104562	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	.	NM_020704	exon16	c.C1759G	p.L587V	TTCAAACTCAACC	.	103	38	77	1	.	3	0	3	0	0
HR	55806	hgsc.bcm.edu	37	8	21978269	21978269	+	Missense_Mutation	SNP	C	C	T	rs114871775		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	HR-154	NM_018411	exon11	c.G2570A	p.R857H	AAGCCACGCCGAG	.	15	7	0	0	C|0.990;T|0.010	0	0	0	0	0
SDC2	6383	ucsc.edu	37	8	97605816	97605816	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	SDC2-516	NM_002998	exon2	c.T169A	p.S57T	TCTGGCTCGGGTA	.	59	1	80	0	.	0	0	0	0	0
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	121357692	121357692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	COL14A1-543	NM_021110	exon45	c.C4967T	p.P1656L	GGCCTCCTGGGGA	.	97	40	103	0	.	1	1	0	0	0
AGO2	27161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	141557696	141557696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	.	NM_012154	exon13	c.T1619C	p.L540P	ATCCCCAGCACCG	.	110	38	111	0	.	0	0	0	0	0
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	77435298	77435298	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	TRPM6-335	NM_017662	exon9	c.G1056C	p.Q352H	AGTGTTCTGAATC	.	87	8	83	0	.	0	0	0	0	0
GOLM1	51280	ucsc.edu	37	9	88692380	88692380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GOLM1-22	NM_016548	exon3	c.T256C	p.S86P	GGCTGGACTGGAT	.	130	11	131	7	.	9	3	6	0	0
TEX10	54881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	103109141	103109141	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	TEX10-92	NM_001161584	exon3	c.G737C	p.S246T	AACCTACTGGATC	.	84	28	83	0	.	1	1	0	0	0
EGFL7	51162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139564703	139564703	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	EGFL7-523	NM_016215	exon8	c.G492C	p.W164C	GTGTTGGGAGGGG	.	157	47	129	0	.	8	8	0	0	0
TRAF2	7186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139794876	139794876	+	Silent	SNP	C	C	G	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	TRAF2-660	NM_021138	exon4	c.C270G	p.A90A	CCAGGCCTTCCCA	.	50	14	51	0	.	0	0	0	0	0
CCDC18	343099	broad.mit.edu;bcgsc.ca	37	1	93705010	93705043	+	In_Frame_Del	DEL	TAGAAAAGAAAACAAATGCTGGTAAGCAAGTGGT	TAGAAAAGAAAACAAATGCTGGTAAGCAAGTGGT	-	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	TAGAAAAGAAAACAAATGCTGGTAAGCAAGTGGT	TAGAAAAGAAAACAAATGCTGGTAAGCAAGTGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CCDC18-138	NM_206886	exon20	c.2747_2767del	p.916_923del	CAGAGCTAGAAAA	.	144	8	185	0	.	0	0	0	0	0
YOD1	55432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	207222409	207222409	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	YOD1-522	NM_018566	exon2	c.1003delG	p.E335fs	.	.	131	40	141	0	.	0	0	0	0	0
TLR5	7100	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	223285316	223285316	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	TLR5-525	NM_003268	exon6	c.1058delG	p.S353fs	.	.	57	25	46	0	.	0	0	0	0	0
ITPKB	3707	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	226924770	226924784	+	In_Frame_Del	DEL	CTTCCTCTTGGCCTC	CTTCCTCTTGGCCTC	-	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	CTTCCTCTTGGCCTC	CTTCCTCTTGGCCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ITPKB-230	NM_002221	exon2	c.376_390del	p.126_130del	.	.	76	17	54	0	.	0	0	0	0	0
GAREM	64762	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	29867165	29867165	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	.	NM_022751	exon4	c.1395delT	p.H465fs	.	.	66	27	93	0	.	0	0	0	0	0
CUL3	8452	hgsc.bcm.edu;bcgsc.ca	37	2	225449678	225449678	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CUL3-229	NM_003590	exon1	c.49delC	p.R17fs	.	.	126	89	76	0	.	0	0	0	0	0
CUL3	8452	hgsc.bcm.edu	37	2	225449678	225449679	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CUL3-229	NM_003590	exon1	c.48_49del	p.16_17del	.	.	129	50	79	0	.	0	0	0	0	0
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu	37	22	18300505	18300505	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MICAL3-68	NM_015241	exon26	c.4922delA	p.Q1641fs	.	.	29	12	4	0	.	0	0	0	0	0
RFX6	222546	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	117203548	117203548	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	RFX6-93	NM_173560	exon4	c.523delC	p.P175fs	.	.	77	35	54	0	.	0	0	0	0	0
CCDC41	51134	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	94763803	94763804	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CCDC41-90	NM_001042399	exon8	c.943_944insA	p.L315fs	.	.	58	21	62	0	.	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885589	29885590	+	In_Frame_Ins	INS	-	-	CCCCTGAGAAGGCCAAGT	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	NEFH-90	NM_021076	exon4	c.1960_1961insCCCCTGAGAAGGCCAAGT	p.S654delinsSPEKAKS	.	.	201	77	158	0	.	0	0	0	0	0
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	108174686	108174687	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MYH15-73	NM_014981	exon21	c.2219_2220insA	p.R740fs	.	.	55	15	38	0	.	0	0	0	0	0
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu	37	15	52680095	52680096	+	Missense_Mutation	DNP	AC	AC	CA	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MYO5A-93	NM_000259	exon14	c.G1682T	p.C561L	CCTTCACACTGGT	.	13.0	5.0	13.0	0.0	.	0	0	0	0	0