Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
NOL9	79707	broad.mit.edu	37	1	6610594	6610594	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NOL9-515	NM_024654	exon2	c.C478T	p.Q160X	CAGGCTGGCCTTG	.	67	4	88	0	.	1	1	0	0	0
RBP7	116362	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	10068242	10068242	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	RBP7-90	NM_052960	exon3	c.C264G	p.I88M	GGTTATCTGGGAC	.	148	15	194	0	.	0	0	0	0	0
PRDM2	7799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	14108836	14108836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PRDM2-116	NM_015866	exon8	c.C4546T	p.R1516W	CGCAGACGGACAG	.	107	39	121	0	.	7	3	4	0	0
PLEKHM2	23207	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16054269	16054269	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PLEKHM2-23	NM_015164	exon9	c.T1702G	p.S568A	GAGGATTCTGGGG	.	191	53	276	2	.	44	22	22	0	0
E2F2	1870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	23848337	23848337	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	E2F2-417	NM_004091	exon3	c.C570G	p.I190M	CCACTGGATGTTG	.	118	45	156	0	.	0	0	0	0	0
CD52	1043	hgsc.bcm.edu;bcgsc.ca	37	1	26646661	26646661	+	Splice_Site	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CD52-90	NM_001803	exon2	c.55-1G>T	.	CCTACAGATACAA	.	42	6	52	0	.	0	0	0	0	0
COL8A2	1296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	36564106	36564106	+	Silent	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	COL8A2-90	NM_005202	exon2	c.T1176C	p.I392I	ACCTCGAATGCCA	.	108	32	187	0	.	2	1	1	0	0
CDC20	991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	43826814	43826814	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CDC20-227	NM_001255	exon9	c.G1101C	p.Q367H	CTGGCAGTCCAAT	.	82	32	118	0	.	1	1	0	0	0
GPBP1L1	60313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	46124748	46124748	+	Silent	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GPBP1L1-91	NM_021639	exon4	c.T12C	p.H4H	AAAATCATGCTGC	.	89	13	97	0	.	74	64	10	0	0
AGBL4	84871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	48999847	48999847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AGBL4-137	NM_032785	exon14	c.T1510C	p.X504Q	GTCTTTAAAAAGG	.	156	20	179	0	.	0	0	0	0	0
NFIA	4774	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	61824902	61824902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NFIA-92	NM_001145512	exon7	c.C1037A	p.P346Q	GCTCCCCAGGAAG	.	271	87	272	1	.	2	2	0	0	0
FNBP1L	54874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	93965136	93965136	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	FNBP1L-227	NM_001164473	exon2	c.T136A	p.L46M	AAACAATTGAGGT	.	97	44	91	0	.	0	0	0	0	0
AQP10	89872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154296801	154296801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AQP10-90	NM_080429	exon6	c.G751T	p.V251L	CCTCTGGTGGGGG	.	33	16	41	0	.	0	0	0	0	0
CENPL	91687	hgsc.bcm.edu;bcgsc.ca	37	1	173772300	173772300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CENPL-90	NM_001127181	exon6	c.C902A	p.A301E	TGTATTGCGAAAG	.	75	19	122	0	.	2	2	0	0	0
RFWD2	64326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	175996826	175996826	+	Splice_Site	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	RFWD2-659	NM_022457	exon16	c.1613-2A>G	.	CTTCACTAAGGGC	.	78	31	72	0	.	0	0	0	0	0
MR1	3140	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	181003148	181003148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MR1-91	NM_001195035	exon2	c.G5T	p.G2V	CTATGGGGGAACT	.	157	48	183	1	.	1	0	1	0	0
CACNA1S	779	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201043744	201043744	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CACNA1S-94	NM_000069	exon14	c.C1953G	p.I651M	GAGCAGGATGTCT	.	145	50	170	1	.	0	0	0	0	0
ETNK2	55224	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	204101322	204101322	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ETNK2-493	NM_018208	exon8	c.T1151A	p.M384K	TTTGGCATCTCCA	.	101	34	165	0	.	13	13	0	0	0
ETNK2	55224	ucsc.edu;bcgsc.ca	37	1	204101336	204101336	+	Silent	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ETNK2-493	NM_018208	exon8	c.G1137A	p.A379A	GGCTGACGCTTGA	.	123	45	182	1	.	20	20	0	0	0
DIEXF	27042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	210006562	210006562	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	DIEXF-91	NM_014388	exon4	c.G421T	p.E141X	GGAAAAGAAGATG	.	51	17	59	0	.	4	4	0	0	0
CENPF	1063	broad.mit.edu	37	1	214816102	214816102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CENPF-567	NM_016343	exon12	c.C4421T	p.P1474L	TCGTTCCATCCCT	.	74	3	98	0	.	0	0	0	0	0
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	214820696	214820696	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CENPF-567	NM_016343	exon13	c.A7783T	p.N2595Y	CTAGAGAATGAGC	.	55	24	66	0	.	0	0	0	0	0
KIN	22944	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7822115	7822115	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	KIN-230	NM_012311	exon4	c.G280C	p.V94L	TGTAGACAATGTT	.	159	60	202	1	.	12	7	5	0	0
INS	3630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	2181135	2181135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	INS-522	NM_001185097	exon3	c.C280A	p.Q94K	AGCATTGTTCCAC	.	51	18	73	0	.	0	0	0	0	0
PDE3B	5140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	14808189	14808189	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PDE3B-90	NM_000922	exon3	c.A1236T	p.E412D	TTCTGAAATAGAG	.	150	59	169	0	.	0	0	0	0	0
CHRM1	1128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62677207	62677207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CHRM1-90	NM_000738	exon2	c.C1366T	p.P456S	GGGAGGGAGTGCG	.	70	15	86	0	.	0	0	0	0	0
CHRM1	1128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62677510	62677510	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CHRM1-90	NM_000738	exon2	c.T1063A	p.F355I	GCGAGAAGGTCTT	.	59	25	78	0	.	0	0	0	0	0
SYTL2	54843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	85409045	85409045	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SYTL2-137	NM_206927	exon11	c.T3444G	p.S1148R	TAGATGACTTCCC	.	50	7	52	0	.	132	113	19	0	0
ANKRD49	54851	broad.mit.edu	37	11	94231479	94231479	+	Silent	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ANKRD49-90	NM_017704	exon3	c.C501T	p.I167I	AGATATCAATGCC	.	99	4	129	0	.	4	4	0	0	0
NCAPD3	23310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	134063948	134063948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NCAPD3-229	NM_015261	exon15	c.G1787A	p.R596Q	TGCTTCCGGACAG	.	100	14	101	0	.	1	1	0	0	0
FAM186A	121006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50745132	50745132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	FAM186A-68	NM_001145475	exon4	c.C5483A	p.S1828Y	GCCCGAGATATTG	.	72	33	89	0	.	0	0	0	0	0
GALNT6	11226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	51758021	51758021	+	Silent	SNP	G	G	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GALNT6-92	NM_007210	exon6	c.C933G	p.P311P	CTGGACGGGCTTG	.	270	97	291	0	.	2	1	1	0	0
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120569801	120569801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GCN1L1-94	NM_006836	exon54	c.G7343A	p.G2448E	AGGCACCCGGCTG	.	173	25	221	0	.	46	39	7	0	0
PSPC1	55269	broad.mit.edu;bcgsc.ca	37	13	20277500	20277500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PSPC1-135	NM_001042414	exon10	c.C1387T	p.H463Y	CATTGTGCTATGA	.	673	55	678	1	.	0	0	0	0	0
ATP11A	23250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113526110	113526110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ATP11A-138	NM_032189	exon26	c.T3053C	p.L1018P	TTACACTAAAGGT	.	77	33	99	0	.	0	0	0	0	0
OR11H12	440153	broad.mit.edu;bcgsc.ca	37	14	19378076	19378076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	OR11H12-24	NM_001013354	exon1	c.A483G	p.I161M	GGTCATACTGTGC	.	1478	104	1608	3	.	0	0	0	0	0
HOMEZ	57594	hgsc.bcm.edu	37	14	23744820	23744820	+	Missense_Mutation	SNP	A	A	T	rs200818825		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	HOMEZ-22	NM_020834	exon2	c.T1617A	p.D539E	ATCATCATCATCT	.	153	39	161	0	.	3	3	0	0	0
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	67291218	67291218	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GPHN-228	NM_001024218	exon4	c.A228C	p.E76D	TGATGAAAAGGAA	.	70	19	94	0	.	10	5	5	0	0
SAMD15	161394	broad.mit.edu	37	14	77846826	77846826	+	Splice_Site	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SAMD15-90	NM_001010860	exon2	c.1788+2T>C	.	TGAAGGTGAGTTG	.	133	4	164	1	.	0	0	0	0	0
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	62211634	62211634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	VPS13C-92	NM_020821	exon58	c.A7492G	p.T2498A	CTTCTGTATATCC	.	103	42	83	0	.	0	0	0	0	0
ADAMTSL3	57188	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	84592737	84592737	+	Missense_Mutation	SNP	G	G	A	rs148020587	alternate_allele	TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ADAMTSL3-1153	NM_207517	exon17	c.G2069A	p.R690H	TCCACCGTCCTCC	.	229	70	279	1	G|1.000;T|0.000	3	1	2	0	0
C15orf32	145858	broad.mit.edu	37	15	93016234	93016234	+	Silent	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	C15orf32-91	NM_153040	exon2	c.T426C	p.D142D	TACAGATTGCAAA	.	122	3	152	0	.	0	0	0	0	0
RPL3L	6123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1995508	1995508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	RPL3L-90	NM_005061	exon9	c.G1159T	p.A387S	TGAAGGCCCTCTT	.	66	27	89	0	.	0	0	0	0	0
SCNN1B	6338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23360139	23360139	+	Silent	SNP	C	C	G	rs151171880	alternate_allele	TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SCNN1B-157	NM_000336	exon2	c.C219G	p.T73T	CAGGACCTACTTG	.	227	102	289	0	C|1.000;A|0.000	0	0	0	0	0
RBBP6	5930	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	24581493	24581493	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	RBBP6-230	NM_006910	exon17	c.A3482T	p.E1161V	ATTTTGAGTCTTC	.	109	39	121	1	.	6	1	5	0	0
MYLK3	91807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	46781755	46781755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MYLK3-374	NM_182493	exon1	c.G351T	p.M117I	AGCCACCATCCTG	.	93	48	146	0	.	0	0	0	0	0
EDC4	23644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67910858	67910858	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	EDC4-92	NM_014329	exon4	c.T434G	p.L145W	CCTTCTTGGCCTA	.	123	50	173	0	.	24	13	11	0	0
AARS	16	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	70301662	70301662	+	Silent	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AARS-91	NM_001605	exon9	c.C1122T	p.I374I	ATTAATGATGTCC	.	107	8	138	1	.	78	67	11	0	0
HYDIN	54768	bcgsc.ca	37	16	71127828	71127828	+	Silent	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	HYDIN-92	NM_001198542	exon11	c.C1419T	p.I473I	CAGACGGATTTCT	.	64	4	65	0	.	0	0	0	0	0
USP10	9100	bcgsc.ca	37	16	84797744	84797744	+	Silent	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	USP10-636	NM_001272075	exon11	c.G1719A	p.Q573Q	AGAGCAGGAAGAA	.	213	11	246	5	.	55	55	0	0	0
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	18057182	18057182	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MYO15A-97	NM_016239	exon42	c.C8060G	p.A2687G	AGGACGCCCCCTG	.	294	70	272	0	.	0	0	0	0	0
KLHL11	55175	broad.mit.edu	37	17	40021223	40021223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	KLHL11-90	NM_018143	exon1	c.G401A	p.R134H	CCCGAGCGGGACT	.	71	4	84	0	.	1	1	0	0	0
ITGA2B	3674	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	42449792	42449792	+	Splice_Site	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ITGA2B-228	NM_000419	exon31	c.3061-1G>A	.	GCCGACCTGGGGG	.	97	22	84	0	.	0	0	0	0	0
C17orf104	284071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42744196	42744196	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	C17orf104-22	NM_001145080	exon5	c.A917T	p.Q306L	TACAGCAAAAAAG	.	40	14	43	0	.	0	0	0	0	0
SPAG9	9043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	49067112	49067112	+	Silent	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SPAG9-659	NM_001130528	exon21	c.C2739A	p.V913V	TGTGTAGACGCCA	.	259	56	221	0	.	21	14	7	0	0
METTL23	124512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74729098	74729098	+	Silent	SNP	C	C	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	.	NM_001206984	exon3	c.C123A	p.A41A	GGCTGCCAAATGT	.	80	13	74	0	.	85	58	27	0	0
AATK	9625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79095314	79095314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AATK-933	NM_001080395	exon11	c.C2422A	p.P808T	GAAGTGGGGCTCC	.	60	15	69	0	.	0	0	0	0	0
MALT1	10892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	56400802	56400802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MALT1-660	NM_006785	exon11	c.A1396G	p.K466E	TGTAGGAAAAGGT	.	66	5	59	0	.	0	0	0	0	0
CHAF1A	10036	broad.mit.edu	37	19	4433329	4433329	+	Silent	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CHAF1A-92	NM_005483	exon13	c.G2466A	p.P822P	GCACCCGCAGGTG	.	67	3	99	0	.	15	15	0	0	0
SPC24	147841	broad.mit.edu	37	19	11259779	11259779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	.	NM_182513	exon2	c.C296A	p.A99D	AGGCTGGCCTTCA	.	90	4	176	1	.	0	0	0	0	0
SYDE1	85360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15220001	15220001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SYDE1-92	NM_033025	exon2	c.A223T	p.S75C	CTGCAAAGCCTGG	.	37	13	51	0	.	12	8	4	0	0
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38385244	38385244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	.	NM_031951	exon4	c.C982A	p.Q328K	GCAACTGCTGGGG	.	285	26	332	0	.	0	0	0	0	0
FBXO11	80204	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	48040950	48040950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	FBXO11-659	NM_001190274	exon17	c.G2063A	p.G688E	AGAATTCCACCAT	.	44	5	61	0	.	22	22	0	0	0
AAK1	22848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	69757189	69757189	+	Silent	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AAK1-333	NM_014911	exon8	c.C822T	p.F274F	AATTGTGAAGTTT	.	125	44	170	0	.	3	2	1	0	0
RTKN	6242	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	74668862	74668862	+	Silent	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	RTKN-91	NM_001015055	exon1	c.C82A	p.R28R	TGAGTCGGAAGCG	.	38	12	65	0	.	56	27	29	0	0
AUP1	550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74755401	74755401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AUP1-90	NM_181575	exon6	c.C645A	p.F215L	AGGGACGAAAAGT	.	60	24	70	0	.	145	123	22	0	0
SOWAHC	65124	ucsc.edu;bcgsc.ca	37	2	110373074	110373074	+	Silent	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	.	NM_023016	exon1	c.C1008T	p.A336A	CGACGCCAGGACG	.	293	128	354	2	.	2	1	1	0	0
ANKRD30BL	554226	bcgsc.ca	37	2	132905741	132905741	+	RNA	SNP	G	G	A	rs111770980		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	.	.	.	.	.	TCAGCCGTGTCAG	.	323	15	377	7	.	0	0	0	0	0
LCT	3938	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	136555630	136555630	+	Silent	SNP	T	T	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	LCT-101	NM_002299	exon13	c.A4945C	p.R1649R	AGCTCCTGTCACG	.	77	11	99	1	.	0	0	0	0	0
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170136009	170136009	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	LRP2-175	NM_004525	exon12	c.A1438T	p.K480X	AGATTTTATTATT	.	81	26	72	0	.	0	0	0	0	0
GAD1	2571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	171700591	171700591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GAD1-91	NM_000817	exon7	c.G675T	p.M225I	CCTCATGGAACAA	.	119	40	122	0	.	0	0	0	0	0
METAP1D	254042	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	172930452	172930452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	METAP1D-90	NM_199227	exon4	c.A469G	p.N157D	GTAAACAACGTGC	.	172	57	167	2	.	3	2	1	0	0
SSFA2	6744	broad.mit.edu	37	2	182763639	182763639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SSFA2-153	NM_001130445	exon5	c.G397A	p.E133K	CAAATTGAAAACT	.	50	3	59	3	.	0	0	0	0	0
MSTN	2660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190927181	190927181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MSTN-650	NM_005259	exon1	c.A142G	p.T48A	ATTTAGTGTTTTG	.	49	22	52	0	.	0	0	0	0	0
C2orf69	205327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	200789854	200789854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	C2orf69-23	NM_153689	exon2	c.G403T	p.A135S	AATGTTGCTACCA	.	92	31	56	0	.	2	0	2	0	0
DGKD	8527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234368926	234368926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	DGKD-676	NM_152879	exon24	c.G2916T	p.M972I	GGAGATGCTGTCC	.	376	143	544	1	.	2	0	2	0	0
SCLY	51540	hgsc.bcm.edu	37	2	239006933	239006933	+	Silent	SNP	C	C	T	rs78475597		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SCLY-92	NM_016510	exon12	c.C1299T	p.A433A	CAGGGCCGAGGTG	.	4	4	1	0	C|0.996;T|0.004	16	5	11	0	0
FRG1B	284802	bcgsc.ca	37	20	29633902	29633902	+	RNA	SNP	C	C	A	rs145072022		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	FRG1B-22	.	.	.	.	AGAGAACCAAATT	.	114	6	139	2	.	2	2	0	0	0
PLTP	5360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44539886	44539886	+	Silent	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PLTP-91	NM_182676	exon3	c.G105A	p.K35K	CTCCTGCTTCACT	.	91	32	124	0	.	0	0	0	0	0
GID8	54994	broad.mit.edu;bcgsc.ca	37	20	61574952	61574952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	.	NM_017896	exon4	c.A421G	p.T141A	TGCCTCACAGAGA	.	218	14	268	1	.	47	41	6	0	0
SAMSN1	64092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	15889252	15889252	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SAMSN1-94	NM_001256370	exon4	c.A444T	p.K148N	ACCCACTTTTTTC	.	51	21	47	0	.	5	5	0	0	0
TRPM2	7226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45825794	45825794	+	Silent	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	TRPM2-92	NM_003307	exon18	c.C2664T	p.I888I	GCTCATCCCGGCG	.	19	10	18	0	.	0	0	0	0	0
ADORA2A	135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24836558	24836558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ADORA2A-90	NM_000675	exon3	c.G340T	p.G114C	TACAATGGCTTGG	.	129	50	155	0	.	0	0	0	0	0
CBX6	23466	broad.mit.edu;bcgsc.ca	37	22	39262330	39262330	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CBX6-226	NM_014292	exon5	c.A1123C	p.S375R	GGTTGCTGGTGAC	.	110	34	130	0	.	7	4	3	0	0
SATB1	6304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	18390936	18390936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SATB1-228	NM_001195470	exon12	c.A2114G	p.E705G	ATGGCCTCTTCGT	.	175	73	202	0	.	18	13	5	0	0
EPM2AIP1	9852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37033483	37033483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	.	NM_014805	exon1	c.G1086T	p.L362F	TGAAACCAAGAAC	.	62	10	62	0	.	2	1	1	0	0
LIMD1	8994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45637412	45637412	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	LIMD1-279	NM_014240	exon1	c.T1041G	p.S347R	TTCCAGTTCTGCC	.	231	79	251	0	.	2	0	2	0	0
ATRIP	84126	ucsc.edu	37	3	48488465	48488465	+	Silent	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ATRIP-23	NM_130384	exon1	c.C216T	p.S72S	CCTGAGCCAATGT	.	45	4	84	0	.	3	3	0	0	0
GMPPB	29925	broad.mit.edu	37	3	49760823	49760823	+	Splice_Site	SNP	A	A	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GMPPB-90	NM_021971	exon3	c.210+2T>G	.	TGCCTCACCCTCT	.	88	11	126	7	.	0	0	0	0	0
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52416419	52416419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	DNAH1-67	NM_015512	exon50	c.T7889C	p.L2630P	TCCTGCTCAAGGC	.	143	57	197	0	.	1	0	1	0	0
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	151166796	151166796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	IGSF10-102	NM_178822	exon4	c.G973A	p.G325R	CATTTCCAGACTG	.	117	46	126	0	.	0	0	0	0	0
BOD1L1	259282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	13601745	13601745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	.	NM_148894	exon10	c.C6779T	p.S2260L	TCCACCGAGCTCG	.	149	16	171	0	.	1	1	0	0	0
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	71588406	71588406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	RUFY3-90	NM_001037442	exon1	c.G116T	p.W39L	GAGAATGGCTCTG	.	247	93	284	1	.	1	1	0	0	0
GRID2	2895	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	94138031	94138031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GRID2-159	NM_001510	exon6	c.A932G	p.D311G	TGTGTGATCCAAA	.	83	25	90	1	.	0	0	0	0	0
NFKB1	4790	broad.mit.edu;bcgsc.ca	37	4	103501735	103501735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NFKB1-912	NM_003998	exon9	c.G774T	p.R258S	GGACAGGACAGCT	.	122	7	143	0	.	32	32	0	0	0
KIAA1109	84162	broad.mit.edu	37	4	123185457	123185457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	KIAA1109-80	NM_015312	exon43	c.G7192A	p.V2398I	AACACTGTCTTGT	.	107	5	95	0	.	0	0	0	0	0
CENPK	64105	broad.mit.edu	37	5	64847424	64847424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CENPK-90	NM_001267038	exon5	c.G208A	p.E70K	TGAGTTCAGCGGT	.	123	5	116	0	.	0	0	0	0	0
TAF7	6879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140699374	140699374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	TAF7-90	NM_005642	exon1	c.A238G	p.I80V	TATCAATGGTTTT	.	90	29	111	0	.	73	37	36	0	0
TFAP2A	7020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	10398689	10398689	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	TFAP2A-91	NM_003220	exon7	c.C1275G	p.N425K	TTTGGCGTTGTTG	.	146	46	193	0	.	0	0	0	0	0
KIF13A	63971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	17817447	17817447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	KIF13A-137	NM_001105567	exon17	c.G1804A	p.V602I	CCTGAACCACATT	.	131	41	153	0	.	1	0	1	0	0
UHRF1BP1	54887	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	34825520	34825520	+	Silent	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	UHRF1BP1-93	NM_017754	exon13	c.C1593T	p.Y531Y	TCTCTACATTCAG	.	144	9	174	0	.	0	0	0	0	0
PRIM2	5558	broad.mit.edu;bcgsc.ca	37	6	57467120	57467120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PRIM2-227	.	.	.	.	GCTTTGGAAAGGA	.	293	10	299	0	.	7	7	0	0	0
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	75861881	75861881	+	Silent	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	COL12A1-142	NM_004370	exon19	c.A3801G	p.A1267A	CAAGTTTGCCACA	.	199	74	211	0	.	2	1	1	0	0
TMEM30A	55754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	75977367	75977367	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	TMEM30A-90	NM_018247	exon2	c.A335T	p.K112M	AATGACTTTTCCA	.	44	18	41	0	.	0	0	0	0	0
MAP3K7	6885	bcgsc.ca	37	6	91226401	91226401	+	Splice_Site	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MAP3K7-980	NM_145331	exon18	c.1641-1G>A	.	TCTTGCCTACAAA	.	66	20	73	0	.	0	0	0	0	0
HDAC2	3066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	114264645	114264645	+	Silent	SNP	A	A	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	HDAC2-660	NM_001527	exon12	c.T1248G	p.A416A	ATCACAAGCTATC	.	15	8	16	0	.	89	54	35	0	0
ELMO1	9844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	37053037	37053037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ELMO1-96	NM_014800	exon16	c.G1304A	p.S435N	GTCTCACTAGCTG	.	88	31	122	0	.	0	0	0	0	0
MLL5	55904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	104717538	104717538	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MLL5-93	NM_018682	exon9	c.G897C	p.E299D	GAGGGAGGCACAA	.	166	19	180	0	.	6	4	2	0	0
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116423474	116423474	+	Missense_Mutation	SNP	T	T	C	rs121913245		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MET-5874	NM_001127500	exon19	c.T3803C	p.M1268T	AGTGGATGGCTTT	.	83	27	98	0	.	163	82	81	0	0
GPR37	2861	hgsc.bcm.edu	37	7	124405027	124405027	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GPR37-523	NM_005302	exon1	c.C4T	p.R2X	GGGCTCGCATGGC	.	6	4	4	0	.	0	0	0	0	0
NRG1	3084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	32616873	32616873	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NRG1-525	NM_013956	exon11	c.A995T	p.E332V	AGAGAGAAGCAGA	.	145	41	157	0	.	2	2	0	0	0
NKX6-3	157848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	41504065	41504065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NKX6-3-90	NM_152568	exon2	c.C311A	p.P104Q	TCCAGCGGCTTGT	.	24	15	32	0	.	1	0	1	0	0
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	71053580	71053580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NCOA2-639	NM_006540	exon14	c.C2867T	p.P956L	CTCTGCGGTGCCC	.	152	28	155	0	.	3	2	1	0	0
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	113316994	113316994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CSMD3-1132	NM_198123	exon52	c.C8222T	p.P2741L	CCATTAGGAAGAC	.	136	53	151	0	.	0	0	0	0	0
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133806739	133806739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PHF20L1-92	NM_016018	exon3	c.A167G	p.E56G	ATGATGAGTGGAT	.	140	48	130	0	.	0	0	0	0	0
ZNF16	7564	bcgsc.ca	37	8	146156384	146156384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ZNF16-95	NM_006958	exon3	c.G1789A	p.G597R	TTTCCCCAGTATG	.	50	4	80	1	.	4	4	0	0	0
AQP3	360	bcgsc.ca	37	9	33447471	33447471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AQP3-90	NM_004925	exon1	c.C58T	p.R20W	GCAGCCGGTAGCG	.	120	5	176	1	.	12	12	0	0	0
SLC28A3	64078	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86900438	86900438	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SLC28A3-94	NM_001199633	exon14	c.T1469A	p.F490Y	GGCATGAAGATGT	.	171	62	164	1	.	0	0	0	0	0
PALM2	114299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	112705604	112705604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PALM2-71	NM_053016	exon7	c.A1135G	p.T379A	GACACCACAGAGC	.	128	19	118	0	.	0	0	0	0	0
FAM102A	399665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130707096	130707096	+	Silent	SNP	G	G	A	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	FAM102A-91	NM_001035254	exon9	c.C999T	p.I333I	CTGCACGATCTTC	.	39	23	60	0	.	6	1	5	0	0
NUP188	23511	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131749966	131749966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NUP188-207	NM_015354	exon23	c.T2363C	p.I788T	ACACCATTGACAT	.	147	48	182	2	.	4	1	3	0	0
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53440302	53440302	+	Silent	SNP	C	C	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SMC1A-232	NM_006306	exon4	c.G495C	p.A165A	CTCCTGCGCCAGC	.	50	40	102	0	.	5	0	5	0	0
LONRF3	79836	broad.mit.edu;bcgsc.ca	37	X	118151559	118151559	+	Missense_Mutation	SNP	G	G	A	rs143959775		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	LONRF3-289	NM_001031855	exon11	c.G2186A	p.R729Q	AAAGCCGAGCTCA	.	53	4	77	1	G|1.000;A|0.000	2	2	0	0	0
UPF3B	65109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118985467	118985467	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	UPF3B-133	NM_023010	exon3	c.G361C	p.D121H	TATTGTCAAGGAA	.	159	121	214	1	.	0	0	0	0	0
ABCA4	24	hgsc.bcm.edu;bcgsc.ca	37	1	94522320	94522320	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ABCA4-162	NM_000350	exon15	c.2219delT	p.F740fs	.	.	231	60	322	0	.	0	0	0	0	0
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	179959644	179959645	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CEP350-26	NM_014810	exon4	c.123_124del	p.41_42del	.	.	66	14	67	0	.	0	0	0	0	0
AKR1C2	1646	broad.mit.edu	37	10	5038014	5038014	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AKR1C2-514	NM_001354	exon8	c.614delT	p.F205fs	TTGCAGAAATCCA	.	650	51	719	0	.	0	0	0	0	0
SORBS1	10580	broad.mit.edu;bcgsc.ca	37	10	97170380	97170388	+	Splice_Site	DEL	CCTCTCTTA	CCTCTCTTA	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	CCTCTCTTA	CCTCTCTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SORBS1-155	.	.	.	.	CACAAGCCTCTCT	.	110	29	133	0	.	0	0	0	0	0
VPS51	738	broad.mit.edu	37	11	64875862	64875862	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	.	NM_013265	exon5	c.919delG	p.G307fs	GACCATGGAGGCA	.	20	7	31	0	.	0	0	0	0	0
YARS2	51067	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	32908454	32908454	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	YARS2-90	NM_001040436	exon1	c.355delC	p.L119fs	.	.	47	18	29	0	.	0	0	0	0	0
CDH24	64403	broad.mit.edu;bcgsc.ca	37	14	23517629	23517629	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CDH24-90	NM_022478	exon13	c.2020delG	p.E674fs	CCTCCTCCAGTAC	.	25	9	74	0	.	0	0	0	0	0
PPIP5K1	9677	hgsc.bcm.edu	37	15	43863609	43863609	+	Splice_Site	DEL	C	C	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PPIP5K1-90	NM_014659	exon25	c.2955+1G>-	.	.	.	91	18	106	0	.	0	0	0	0	0
PDCD5	9141	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	33077794	33077794	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PDCD5-228	NM_004708	exon5	c.289delA	p.K97fs	.	.	124	43	144	0	.	0	0	0	0	0
ZNF792	126375	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	35450211	35450211	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	.	NM_175872	exon4	c.548delA	p.N183fs	.	.	273	101	348	0	.	0	0	0	0	0
ZNF256	10172	hgsc.bcm.edu;bcgsc.ca	37	19	58452565	58452565	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ZNF256-92	NM_005773	exon3	c.1611delT	p.H537fs	.	.	98	19	129	0	.	0	0	0	0	0
GREB1	9687	bcgsc.ca	37	2	11767087	11767100	+	Frame_Shift_Del	DEL	GACAGAGGGATGTC	GACAGAGGGATGTC	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	GACAGAGGGATGTC	GACAGAGGGATGTC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GREB1-91	NM_014668	exon25	c.4307_4319del	p.1436_1440del	GGTGCAGACAGAG	.	140	5	159	0	.	0	0	0	0	0
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	57782069	57782069	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ZNF831-126	NM_178457	exon3	c.3985delA	p.K1329fs	.	.	104	43	108	0	.	0	0	0	0	0
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	38740016	38740018	+	In_Frame_Del	DEL	ACT	ACT	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	ACT	ACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SCN10A-99	NM_006514	exon27	c.4693_4695del	p.1565_1565del	.	.	118	18	164	0	.	0	0	0	0	0
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	38740022	38740022	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SCN10A-99	NM_006514	exon27	c.4689delT	p.L1563fs	.	.	107	18	158	0	.	0	0	0	0	0
FBXW7	55294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	153250883	153250883	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	FBXW7-6296	NM_033632	exon8	c.1177delC	p.R393fs	.	.	98	35	89	0	.	0	0	0	0	0
MAP3K7	6885	hgsc.bcm.edu;bcgsc.ca	37	6	91226399	91226400	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MAP3K7-980	NM_145331	exon17	c.1641_1642del	p.547_548del	.	.	66	20	76	0	.	0	0	0	0	0
MAP3K7	6885	hgsc.bcm.edu	37	6	91226399	91226401	+	Frame_Shift_Del	DEL	GCC	GCC	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	GCC	GCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MAP3K7-980	NM_145331	exon17	c.1641_1642del	p.547_548del	.	.	67	13	77	0	.	0	0	0	0	0
GRIK2	2898	hgsc.bcm.edu;bcgsc.ca	37	6	102513771	102513771	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GRIK2-157	NM_001166247	exon16	c.2662delT	p.L888fs	.	.	80	37	96	0	.	0	0	0	0	0
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	107732109	107732120	+	In_Frame_Del	DEL	CCTCGTAGAGAT	CCTCGTAGAGAT	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	CCTCGTAGAGAT	CCTCGTAGAGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	LAMB4-140	NM_007356	exon14	c.1652_1663del	p.551_555del	.	.	119	23	174	0	.	0	0	0	0	0
PTPN3	5774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	112219466	112219466	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PTPN3-229	NM_001145368	exon4	c.276delG	p.R92fs	.	.	113	32	167	0	.	0	0	0	0	0
SUPT20HL1	100130302	broad.mit.edu	37	X	24382371	24382373	+	In_Frame_Del	DEL	TAT	TAT	-	rs71897203	alternate_allele	TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	TAT	TAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	.	NM_001136234	exon1	c.1494_1496del	p.498_499del	TGCTGCTATTGCT	.	300	7	376	0	.	0	0	0	0	0
CENPL	91687	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	173772297	173772298	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CENPL-90	NM_001127181	exon6	c.905_906insA	p.I302fs	.	.	74	18	123	0	.	0	0	0	0	0
MTG1	92170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	135209749	135209750	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MTG1-91	NM_138384	exon3	c.260_261insGC	p.L87fs	.	.	108	42	139	0	.	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu;broad.mit.edu	37	22	29885591	29885592	+	In_Frame_Ins	INS	-	-	CCTGAGAAGGCCAAGTCC	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NEFH-90	NM_021076	exon4	c.1962_1963insCCTGAGAAGGCCAAGTCC	p.S654delinsSPEKAKS	.	.	226	59	329	0	.	0	0	0	0	0
OVOL1	5017	broad.mit.edu	37	11	65562811	65562812	+	Nonstop_Mutation	DNP	GA	GA	TT	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	OVOL1-68	NM_004561	exon4	c.A804T	.	CCTGTGAGTGGCT	.	41	3	53	0	.	0	0	0	0	0