Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PRDM16	63976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	3334451	3334451	+	Silent	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	PRDM16-660	NM_022114	exon11	c.C2751T	p.D917D	GGCGGACTCGGGC	.	311	80	178	0	.	0	0	0	0	0
PRAMEF16	654348	hgsc.bcm.edu	37	1	13497726	13497726	+	Silent	SNP	A	A	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	.	NM_001045480	exon3	c.A1023C	p.G341G	CCTTGGAGCTCTG	.	48	4	48	1	.	0	0	0	0	0
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19176018	19176018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	TAS1R2-93	NM_152232	exon4	c.C1284A	p.N428K	AGTGAAGTTGACC	.	121	30	79	0	.	0	0	0	0	0
ALDH4A1	8659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19201049	19201049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ALDH4A1-226	NM_003748	exon14	c.T1487C	p.V496A	CTCAGCACCTTTG	.	290	67	177	0	.	102	3	99	0	0
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27106580	27106580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ARID1A-584	NM_006015	exon20	c.T6191C	p.L2064P	TTACACTCGCCAA	.	238	58	194	0	.	17	10	7	0	0
MAP7D1	55700	hgsc.bcm.edu	37	1	36642065	36642065	+	Silent	SNP	G	G	A	rs139644057		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	MAP7D1-138	NM_018067	exon7	c.G1116A	p.P372P	GACGCCGTGCAGC	.	9	5	3	1	G|0.952;A|0.048	2	1	1	0	0
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	42047804	42047804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	HIVEP3-157	NM_024503	exon4	c.C2665T	p.R889C	GGCTGCGCTGGGG	.	299	70	159	0	.	1	1	0	0	0
YBX1	4904	hgsc.bcm.edu	37	1	43166460	43166460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	YBX1-95	NM_004559	exon7	c.C749T	p.P250L	GCCCTCCTCGCCA	.	82	6	30	1	.	2	2	0	0	0
FNBP1L	54874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94009756	94009756	+	Silent	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	FNBP1L-227	NM_001164473	exon12	c.G1257A	p.Q419Q	ACTACAGAAAGAA	.	59	17	58	0	.	39	20	19	0	0
KCNC4	3749	bcgsc.ca	37	1	110754159	110754159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	KCNC4-154	NM_001039574	exon1	c.G38A	p.R13H	GCGGGCGCAAGTC	.	108	5	45	0	.	7	7	0	0	0
FLG	2312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152277075	152277075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	FLG-106	NM_002016	exon3	c.G10287T	p.E3429D	CTGACCCTCTTGG	.	1349	247	584	1	.	2	2	0	0	0
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	180047678	180047678	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	CEP350-26	NM_014810	exon29	c.A5848T	p.S1950C	TTAGGCAGCCCTG	.	55	10	44	0	.	2	2	0	0	0
DHX9	1660	broad.mit.edu	37	1	182812436	182812436	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	DHX9-92	NM_001357	exon3	c.T119G	p.V40G	TTCAGGTGGAAGG	.	53	11	25	2	.	0	0	0	0	0
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237617770	237617770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	RYR2-158	NM_001035	exon15	c.G1372T	p.D458Y	CTGCAGGATCTCA	.	104	22	70	0	.	0	0	0	0	0
OR2L3	391192	hgsc.bcm.edu	37	1	248224850	248224850	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	OR2L3-68	NM_001004687	exon1	c.T867A	p.Y289X	CATCTATAGCCTG	.	277	20	130	2	.	0	0	0	0	0
OR2L3	391192	hgsc.bcm.edu	37	1	248224864	248224864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	OR2L3-68	NM_001004687	exon1	c.A881G	p.K294R	GGAACAAGGAGGT	.	251	16	121	2	.	0	0	0	0	0
ST8SIA6	338596	hgsc.bcm.edu;broad.mit.edu	37	10	17495608	17495608	+	Silent	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ST8SIA6-91	NM_001004470	exon2	c.G150A	p.A50A	CCTCAGCGCTGCG	.	25	9	17	0	.	0	0	0	0	0
DMBT1	1755	hgsc.bcm.edu	37	10	124361509	124361509	+	Silent	SNP	T	T	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	DMBT1-494	NM_007329	exon29	c.T3540C	p.G1180G	CCAGGGTTCAGGA	.	35	9	29	1	.	0	0	0	0	0
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	129910454	129910454	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	MKI67-519	NM_002417	exon9	c.A1912C	p.I638L	GTAAAATATCATG	.	175	39	152	0	.	6	4	2	0	0
INCENP	3619	hgsc.bcm.edu	37	11	61914245	61914245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	INCENP-227	NM_001040694	exon15	c.G2075A	p.R692Q	AGGAGCGGCGGGA	.	6	3	4	1	.	1	1	0	0	0
CADM1	23705	hgsc.bcm.edu;broad.mit.edu	37	11	115080343	115080343	+	Silent	SNP	G	G	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	CADM1-92	NM_014333	exon8	c.C1029A	p.T343T	GGTGGTGGTTGTT	.	120	6	94	0	.	28	28	0	0	0
PUS7L	83448	hgsc.bcm.edu	37	12	44149019	44149019	+	Missense_Mutation	SNP	C	C	A	rs148928799	alternate_allele	TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	PUS7L-91	NM_001098614	exon2	c.G30T	p.R10S	ACTAAACCTGATT	.	61	4	51	0	C|1.000;T|0.000	0	0	0	0	0
MCF2L	23263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113741757	113741757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	MCF2L-228	NM_001112732	exon22	c.A2582G	p.K861R	GCTACAAGCAGTC	.	56	12	22	0	.	0	0	0	0	0
UPF3A	65110	hgsc.bcm.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	27	6	19	1	.	8	8	0	0	0
BAZ1A	11177	hgsc.bcm.edu	37	14	35269498	35269498	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	BAZ1A-291	NM_182648	exon9	c.A1060T	p.K354X	CAATTTTTTTCAA	.	29	3	18	0	.	21	21	0	0	0
HSPA2	3306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	65009419	65009419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	HSPA2-226	NM_021979	exon1	c.C1852A	p.P618T	GGTGGTCCTGGCG	.	106	30	59	0	.	6	6	0	0	0
EIF2AK4	440275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40324962	40324962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	EIF2AK4-757	NM_001013703	exon37	c.A4733G	p.D1578G	AGGTGGATCTACC	.	78	16	87	0	.	0	0	0	0	0
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19051691	19051691	+	Silent	SNP	C	C	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	TMC7-93	NM_024847	exon9	c.C1260A	p.I420I	TTTTATCACCCCA	.	184	37	157	0	.	5	3	2	0	0
NETO2	81831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	47117430	47117430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	NETO2-90	NM_018092	exon9	c.G1280A	p.R427H	GAGGAGCGCCGCA	.	372	78	154	0	.	29	15	14	0	0
GLG1	2734	broad.mit.edu	37	16	74640687	74640687	+	Silent	SNP	T	T	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	GLG1-136	NM_001145667	exon1	c.A306G	p.G102G	CGCTCCTCCCCGC	.	44	14	22	1	.	1	1	0	0	0
EIF4A1	1973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7478578	7478578	+	Splice_Site	SNP	T	T	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	EIF4A1-227	NM_001204510	exon4	c.345+2T>G	.	AGCAGGTAAGAGT	.	190	41	134	0	.	1	1	0	0	0
MED24	9862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38187790	38187790	+	Splice_Site	SNP	C	C	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	MED24-187	NM_001079518	exon11	c.1028+1G>C	.	CTCATACTTGCAG	.	356	55	156	0	.	7	0	7	0	0
NPEPPS	9520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	45669357	45669357	+	Silent	SNP	A	A	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	NPEPPS-90	NM_006310	exon11	c.A1296T	p.I432I	TGAGATATTTGAT	.	133	17	76	0	.	123	54	69	0	0
CEP95	90799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62532827	62532827	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	CEP95-23	NM_138363	exon18	c.G2178C	p.Q726H	CCACCAGGATGAA	.	155	47	62	0	.	17	7	10	0	0
LINGO3	645191	hgsc.bcm.edu	37	19	2290499	2290499	+	Missense_Mutation	SNP	C	C	T	rs7258841		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	.	NM_001101391	exon2	c.G1277A	p.R426H	AGGAAGCGGACGT	.	7	7	1	1	C|0.734;T|0.266	0	0	0	0	0
ZNF682	91120	hgsc.bcm.edu	37	19	20117835	20117835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ZNF682-92	NM_033196	exon4	c.A476G	p.N159S	TTTAGATTTGATG	.	42	3	50	0	.	0	0	0	0	0
CDC42EP5	148170	hgsc.bcm.edu	37	19	54976502	54976502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	CDC42EP5-90	NM_145057	exon3	c.C230T	p.P77L	GACTGCGGGACGG	.	6	3	1	0	.	0	0	0	0	0
ZNF419	79744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58005060	58005060	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ZNF419-90	NM_001098491	exon5	c.T1138G	p.F380V	GGGAAATTTTTTA	.	227	42	178	0	.	6	6	0	0	0
GEN1	348654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	17962008	17962008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	GEN1-359	NM_182625	exon14	c.G1529A	p.G510E	ATTCGGGGATTTC	.	98	15	97	0	.	0	0	0	0	0
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	21238283	21238283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	APOB-175	NM_000384	exon22	c.C3467T	p.A1156V	CCATAAGCTGTAG	.	201	35	96	0	.	0	0	0	0	0
RNF103	7844	hgsc.bcm.edu	37	2	86832538	86832538	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	RNF103-226	NM_005667	exon4	c.T486G	p.Y162X	CCTGCAATATCTA	.	111	8	97	0	.	0	0	0	0	0
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	141607702	141607702	+	Silent	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	LRP1B-311	NM_018557	exon29	c.C4908T	p.N1636N	AGTTCCGTTAATA	.	123	25	123	0	.	0	0	0	0	0
NDUFAF5	79133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	13775537	13775537	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	.	NM_024120	exon5	c.A429T	p.E143D	TGAAGAATTCCTT	.	48	6	45	0	.	19	10	9	0	0
FAM83D	81610	hgsc.bcm.edu	37	20	37555364	37555364	+	Silent	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	FAM83D-93	NM_030919	exon1	c.G369A	p.S123S	CTCCTCGCACGAC	.	10	5	6	1	.	7	4	3	0	0
GART	2618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34904710	34904710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	GART-91	NM_001136005	exon5	c.G469A	p.G157R	TCACCCCTTTTCC	.	627	130	402	0	.	84	49	35	0	0
ADORA2A	135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24837246	24837246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ADORA2A-90	NM_000675	exon3	c.C1028T	p.P343L	ACCCGCCAGGAGT	.	71	17	41	0	.	14	14	0	0	0
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	151161388	151161388	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	IGSF10-102	NM_178822	exon5	c.A5347T	p.N1783Y	TTTGGTTTGCAAG	.	170	45	98	0	.	0	0	0	0	0
GOLIM4	27333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	167742778	167742778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	GOLIM4-291	NM_014498	exon13	c.A1729G	p.N577D	CTTCATTTTCATC	.	194	36	156	0	.	88	52	36	0	0
BST1	683	hgsc.bcm.edu	37	4	15704874	15704874	+	Missense_Mutation	SNP	G	G	C	rs2302468		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	BST1-90	NM_004334	exon1	c.G107C	p.G36A	GGCGCGGGGAGGG	.	10	6	2	0	G|0.084;C|0.916	0	0	0	0	0
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	104117119	104117119	+	Silent	SNP	A	A	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	CENPE-277	NM_001813	exon4	c.T315G	p.V105V	GGGTATAACTCCC	.	49	10	54	0	.	0	0	0	0	0
TPPP	11076	hgsc.bcm.edu	37	5	678087	678087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	TPPP-90	NM_007030	exon2	c.G89A	p.R30K	GACAGCCTCTTGG	.	73	5	29	0	.	3	3	0	0	0
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	55247844	55247844	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	IL6ST-290	NM_002184	exon13	c.G1612C	p.E538Q	CCCACTCTAAGAC	.	64	6	70	0	.	44	25	19	0	0
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140712677	140712677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	PCDHGA1-137	NM_031993	exon1	c.A2426G	p.N809S	AGGTAAACTTTTG	.	173	34	104	0	.	4	4	0	0	0
CSF1R	1436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149433707	149433707	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	CSF1R-2640	NM_005211	exon22	c.T2844A	p.S948R	GTGCTCACTAGAG	.	67	14	28	0	.	71	71	0	0	0
HLA-G	3135	ucsc.edu	37	6	29797253	29797253	+	Silent	SNP	G	G	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	HLA-G-517	NM_002127	exon5	c.G678A	p.R226R	CCTGAGGTGCTGG	.	542	2	229	0	.	7221	7214	4	1	2
VARS	7407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31762754	31762754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	VARS-93	NM_006295	exon2	c.C241A	p.P81T	CTGCTGGCCACAG	.	86	15	59	0	.	21	14	7	0	0
AARS2	57505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	44272835	44272835	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	AARS2-91	NM_020745	exon11	c.A1535T	p.D512V	GGGCTGTCGTCAG	.	370	34	179	0	.	17	14	3	0	0
PUS7	54517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	105099624	105099624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	PUS7-90	NM_019042	exon15	c.T1840C	p.F614L	AAGCAAAAACTGG	.	85	16	100	0	.	0	0	0	0	0
RINT1	60561	hgsc.bcm.edu	37	7	105177143	105177143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	RINT1-517	NM_021930	exon3	c.C220A	p.L74I	AAGAAACTTGATA	.	85	5	93	0	.	10	10	0	0	0
KIAA1456	57604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	12879058	12879058	+	Silent	SNP	T	T	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	KIAA1456-90	NM_020844	exon5	c.T870C	p.S290S	ACACTCTAGTTTA	.	110	26	64	0	.	0	0	0	0	0
RP2	6102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	46713306	46713306	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	RP2-130	NM_006915	exon2	c.C498G	p.I166M	AAGTATCTTCAAC	.	229	34	193	0	.	9	1	8	0	0
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	144904238	144904238	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	SLITRK2-136	NM_001144005	exon5	c.C295T	p.Q99X	GGGTTACAGGAGA	.	243	48	155	0	.	0	0	0	0	0
IPP	3652	broad.mit.edu	37	1	46184897	46184898	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	IPP-91	NM_001145349	exon6	c.1163_1164del	p.388_388del	CCCATAACACACA	.	118	7	73	0	.	0	0	0	0	0
TSG101	7251	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18541141	18541142	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	TSG101-90	NM_006292	exon2	c.51_52del	p.17_18del	.	.	136	24	161	0	.	0	0	0	0	0
PRB2	653247	broad.mit.edu	37	12	11546506	11546508	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	PRB2-22	NM_006248	exon3	c.504_506del	p.168_169del	CGGGACTTGTTGT	.	1866	9	807	2	.	0	0	0	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72190482	72190484	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	SIPA1L1-156	NM_015556	exon16	c.4390_4392del	p.1464_1464del	TCCTCTTCCTCCT	.	308	9	158	0	.	0	0	0	0	0
MPP3	4356	broad.mit.edu	37	17	41888202	41888203	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	MPP3-91	NM_001932	exon18	c.1430_1431del	p.477_477del	ACAAACTTTGTTT	.	505	8	260	0	.	0	0	0	0	0
HAMP	57817	broad.mit.edu	37	19	35773520	35773522	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	HAMP-90	NM_021175	exon1	c.40_42del	p.14_14del	CTCCTGCTCCTCC	.	481	9	243	0	.	0	0	0	0	0
ORC2	4999	bcgsc.ca	37	2	201791481	201791490	+	Splice_Site	DEL	TGAAACTTAC	TGAAACTTAC	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	TGAAACTTAC	TGAAACTTAC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ORC2-209	.	.	.	.	CATTTTTGAAACT	.	132	6	124	0	.	0	0	0	0	0
MAML3	55534	broad.mit.edu	37	4	140810639	140810641	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	MAML3-455	NM_018717	exon3	c.1937_1939del	p.646_647del	GTGGCGGCTGCTG	.	173	11	93	0	.	0	0	0	0	0
FAT1	2195	broad.mit.edu	37	4	187539365	187539365	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	FAT1-34	NM_005245	exon10	c.8375delC	p.S2792fs	TCTACAGAAGCCA	.	371	9	314	0	.	0	0	0	0	0
ZNF184	7738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	27420221	27420223	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	TGG	TGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ZNF184-91	NM_007149	exon6	c.1115_1117del	p.372_373del	.	.	103	20	89	0	.	0	0	0	0	0
FOXK1	221937	broad.mit.edu	37	7	4802068	4802068	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	FOXK1-516	NM_001037165	exon9	c.2175delC	p.G725fs	TGCCGGCCCCCAG	.	6	2	5	0	.	0	0	0	0	0
CNKSR2	22866	broad.mit.edu	37	X	21627678	21627680	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	CNKSR2-625	NM_014927	exon20	c.2635_2637del	p.879_879del	GAGGAAGAGGAGG	.	140	9	45	0	.	0	0	0	0	0
LATS2	26524	broad.mit.edu	37	13	21562482	21562483	+	In_Frame_Ins	INS	-	-	GGGGCG	rs10658032		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	LATS2-1404	NM_014572	exon4	c.1437_1438insCGCCCC	p.P479delinsPAP	CGCAGCCGGGGCG	.	15	4	7	0	.	0	0	0	0	0
GRPR	2925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	16168549	16168550	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	GRPR-565	NM_005314	exon2	c.535_536insC	p.S179fs	.	.	376	68	158	0	.	0	0	0	0	0
ANAPC5	51433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121766167	121766168	+	Missense_Mutation	DNP	TC	TC	CA	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ANAPC5		exon10	c.G1255T	p.D419C	TGATATCGATGAG	.	121.0	18.0	76.0	0.0	.	0	0	0	0	0