Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
DDI2	84301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15956850	15956850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	DDI2-44	NM_032341	exon3	c.C299A	p.A100D	GTATAGCTGTGCC	.	112	24	131	0	.	6	5	1	0	0
SLC16A12	387700	bcgsc.ca	37	10	91203549	91203549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SLC16A12-69	NM_213606	exon4	c.A268G	p.I90V	AATGGATCCATGC	.	60	4	56	0	.	22	22	0	0	0
NDUFS3	4722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47604000	47604000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	NDUFS3-90	NM_004551	exon6	c.C607T	p.P203S	GACTTTCCTCTAT	.	378	86	512	1	.	79	60	19	0	0
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	73020521	73020521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	ARHGEF17-227	NM_014786	exon1	c.G838T	p.D280Y	GACGACGACCGAG	.	50	13	82	0	.	12	9	3	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49446075	49446075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	MLL2-612	NM_003482	exon10	c.C1391T	p.A464V	CGTGATGCCTCAG	.	180	48	166	0	.	10	7	3	0	0
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	101684601	101684601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	UTP20-155	NM_014503	exon8	c.A826G	p.M276V	AAAAACATGGTCA	.	95	28	65	1	.	4	2	2	0	0
PTPN11	5781	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	112892482	112892482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	PTPN11-7239	NM_080601	exon5	c.C640A	p.Q214K	CTCAAGCAGGTGA	.	50	7	39	0	.	0	0	0	0	0
ABCB9	23457	broad.mit.edu	37	12	123444428	123444428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	ABCB9-90	NM_019625	exon2	c.C355A	p.L119M	CGAACAGGGCCCA	.	35	6	43	0	.	11	6	5	0	0
OGFOD2	79676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123463804	123463804	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	OGFOD2-69	NM_024623	exon8	c.C784G	p.R262G	TGCTGCCGTGAGC	.	70	13	86	0	.	29	13	16	0	0
FARP1	10160	ucsc.edu	37	13	98865556	98865556	+	Silent	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	FARP1-290	NM_001001715	exon2	c.G60A	p.S20S	AAATTCGGGGATC	.	153	5	249	0	.	89	81	8	0	0
BTBD7	55727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	93730186	93730186	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	BTBD7-91	NM_001002860	exon4	c.T1316G	p.F439C	TCATAAAAAACAT	.	75	16	89	0	.	13	7	6	0	0
SLC27A2	11001	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	50528292	50528292	+	Silent	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SLC27A2-92	NM_003645	exon10	c.G1862A	p.X621X	AACTCTGAATATT	.	75	15	99	0	.	11	3	7	1	0
CDH16	1014	ucsc.edu	37	16	66949283	66949283	+	Splice_Site	SNP	T	T	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	CDH16-93	NM_004062	exon7	c.425-2A>T	.	GATGCCTGGTTCA	.	65	1	60	0	.	4	4	0	0	0
PIK3R6	146850	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	8731475	8731475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	.	.	.	.	.	AGTCTGGGAGTGA	.	80	9	138	0	.	13	13	0	0	0
ASXL3	80816	hgsc.bcm.edu	37	18	31318454	31318454	+	Silent	SNP	G	G	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	ASXL3-49	NM_030632	exon11	c.G1086C	p.L362L	CAGGCTGGGCATG	.	36	2	27	0	.	0	0	0	0	0
EPG5	57724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	43440155	43440155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	EPG5-580	NM_020964	exon40	c.T6923C	p.L2308P	GTTAAAAGGGGCA	.	90	18	145	0	.	12	10	2	0	0
ZNF532	55205	ucsc.edu	37	18	56586955	56586955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	ZNF532-154	NM_018181	exon4	c.C1436T	p.T479M	AAGCCACGGTCAT	.	32	3	50	0	.	5	5	0	0	0
LPHN1	22859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14263148	14263148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	LPHN1-523	NM_001008701	exon22	c.T3637C	p.S1213P	GCGAGGAGGGATT	.	69	7	110	0	.	5	2	3	0	0
EMR2	30817	ucsc.edu	37	19	14884819	14884819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	EMR2-524	NM_001271052	exon3	c.G130A	p.A44T	GACAGGCGGTGGC	.	142	1	210	0	.	74	47	27	0	0
LPAR2	9170	broad.mit.edu	37	19	19735163	19735163	+	Missense_Mutation	SNP	G	G	A	rs144007983		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	LPAR2-501	NM_004720	exon3	c.C958T	p.R320C	ACTCGCGGGTGGA	.	75	6	109	0	G|1.000;A|0.000	3	3	0	0	0
SIGLEC11	114132	hgsc.bcm.edu	37	19	50462728	50462728	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SIGLEC11-94	NM_052884	exon5	c.A946C	p.T316P	CCAGGGTTCTGGG	.	35	3	57	1	.	5	5	0	0	0
SYT3	84258	hgsc.bcm.edu	37	19	51135725	51135725	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SYT3-155	NM_032298	exon2	c.G492C	p.M164I	CGAGTCCATGTCC	.	37	2	59	0	.	0	0	0	0	0
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	50149203	50149203	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	NRXN1-92	NM_001135659	exon24	c.G4523C	p.S1508T	TTTCGACTCTCGT	.	111	16	130	1	.	0	0	0	0	0
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55523606	55523606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	CCDC88A-94	NM_001254943	exon30	c.A4876G	p.S1626G	GCAGGCTAAATTC	.	68	19	104	0	.	25	24	1	0	0
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	62067675	62067675	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	FAM161A-136	NM_032180	exon3	c.T464A	p.M155K	GATGTCATTAATG	.	67	8	90	0	.	2	1	1	0	0
WDR92	116143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	68368907	68368907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	WDR92-68	NM_001256476	exon4	c.C436A	p.P146T	GCCTTGGGTCCCA	.	201	31	248	2	.	4	3	1	0	0
MAT2A	4144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	85770091	85770091	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	MAT2A-90	NM_005911	exon8	c.A1019T	p.K340M	CTCAGAAGAGTGA	.	143	28	172	0	.	50	38	12	0	0
PHOSPHO2	493911	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	170557930	170557930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	PHOSPHO2-91	NM_001199286	exon4	c.A449G	p.N150S	CAAAGAATCTTTG	.	75	13	90	0	.	1	1	0	0	0
OR6B2	389090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	240969643	240969643	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	.	NM_001005853	exon1	c.C204G	p.F68L	CTCCAGGAAAGAC	.	168	20	242	0	.	0	0	0	0	0
MGME1	92667	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	17950811	17950811	+	Silent	SNP	C	C	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	.	NM_052865	exon2	c.C309A	p.I103I	TCCTATCTTCAAT	.	96	14	104	0	.	24	20	3	0	1
KCNQ2	3785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62070959	62070959	+	Silent	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	KCNQ2-92	NM_172106	exon6	c.C919T	p.L307L	CAGGCAGCGCGAA	.	75	28	89	0	.	0	0	0	0	0
L3MBTL2	83746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41621916	41621916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	L3MBTL2-92	NM_031488	exon12	c.A1475G	p.K492R	GTCAGAAGAATGA	.	70	6	97	0	.	26	25	1	0	0
RPL14	9045	hgsc.bcm.edu	37	3	40503557	40503557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	RPL14-90	NM_003973	exon6	c.T482C	p.V161A	CTAAAGTTCCAGC	.	37	2	49	2	.	733	729	1	0	3
THAP9	79725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	83839493	83839493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	THAP9-156	NM_024672	exon5	c.G2128A	p.D710N	CTGTCAGATCATA	.	107	26	101	0	.	2	2	0	0	0
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	149075914	149075914	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	NR3C2-154	NM_000901	exon5	c.C2153G	p.S718W	TTGACCGAGGGTT	.	177	30	289	0	.	3	2	1	0	0
SREK1	140890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	65466769	65466769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SREK1-91	NM_001077199	exon9	c.C1478T	p.S493F	GTAGTTCCAGCAG	.	69	17	63	0	.	1	0	1	0	0
PTK7	5754	broad.mit.edu	37	6	43112987	43112987	+	Silent	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	PTK7-1493	NM_001270398	exon16	c.G2481A	p.E827E	CTTGGAGGAGGGA	.	103	4	115	0	.	31	31	0	0	0
SLC22A7	10864	ucsc.edu	37	6	43270500	43270500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SLC22A7-90	NM_153320	exon8	c.A1384G	p.R462G	GTGCTCAGGTGAG	.	13	2	21	0	.	6	0	6	0	0
NT5DC1	221294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	116429548	116429548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	NT5DC1-226	NM_152729	exon3	c.T207A	p.D69E	ATTGGATCTAGAA	.	71	10	77	0	.	36	30	6	0	0
SGK1	6446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	134495704	134495704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SGK1-981	NM_001143676	exon4	c.A382G	p.M128V	GACCCATCCTCCT	.	51	7	70	0	.	303	253	50	0	0
SLC35D3	340146	hgsc.bcm.edu	37	6	137245094	137245094	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SLC35D3-91	NM_001008783	exon2	c.T511C	p.Y171H	GCTGCCTACCTGG	.	10	6	4	1	.	0	0	0	0	0
RP9	6100	broad.mit.edu	37	7	33139017	33139017	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	RP9-90	NM_203288	exon3	c.C215G	p.P72R	ACATCTGGTATGC	.	123	5	135	1	.	13	13	0	0	0
MLL5	55904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	104748161	104748161	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	MLL5-93	NM_018682	exon21	c.A3257T	p.D1086V	TGAGGGACCTGAC	.	65	22	54	0	.	17	8	9	0	0
TTC26	79989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	138822639	138822639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	TTC26-91	NM_001144920	exon3	c.T188C	p.I63T	TGTGGATTGGATA	.	110	7	82	0	.	12	11	1	0	0
AGPAT6	137964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	41467379	41467379	+	Silent	SNP	C	C	T	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	AGPAT6-90	NM_178819	exon4	c.C441T	p.S147S	GCTGAGCAGAACC	.	124	30	150	0	.	45	34	10	1	0
CDC37L1	55664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	4706079	4706079	+	Silent	SNP	A	A	G	rs200977934	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	CDC37L1-90	NM_017913	exon7	c.A981G	p.E327E	TAAAGAAGATGAT	.	46	6	50	0	.	14	11	3	0	0
TOR2A	27433	ucsc.edu	37	9	130494938	130494938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	TOR2A-90	NM_001085347	exon4	c.C626T	p.A209V	TCCAATGCCACCT	.	4	1	12	0	.	19	16	3	0	0
CACFD1	11094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	136333115	136333115	+	Silent	SNP	G	G	A	rs150411088		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	.	NM_017586	exon4	c.G393A	p.T131T	TGCTACGGGGGTG	.	59	16	68	0	G|1.000;A|0.000	19	8	11	0	0
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	31152282	31152282	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	DMD-265	NM_004006	exon77	c.G10951C	p.D3651H	TTGTGTCCTGGGG	.	39	13	59	0	.	7	4	3	0	0
GLUD2	2747	ucsc.edu	37	X	120182436	120182436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	GLUD2-131	NM_012084	exon1	c.A898G	p.R300G	GGGTTTAGAGATA	.	92	1	109	0	.	150	1	149	0	0
OR51A7	119687	broad.mit.edu;bcgsc.ca	37	11	4928976	4928976	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	OR51A7-70	NM_001004749	exon1	c.377delT	p.I126fs	TTGCCATTCACAA	.	112	15	138	0	.	0	0	0	0	0
NOL11	25926	broad.mit.edu	37	17	65732103	65732103	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	NOL11-90	NM_015462	exon9	c.1018delG	p.G340fs	TTAGCAGGTGCTC	.	81	8	90	0	.	0	0	0	0	0
MIDN	90007	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	1257046	1257048	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	MIDN-90	NM_177401	exon8	c.1182_1184del	p.394_395del	.	.	40	10	70	0	.	0	0	0	0	0
PSMD1	5707	broad.mit.edu;bcgsc.ca	37	2	231943417	231943417	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	PSMD1-92	NM_002807	exon10	c.1116delA	p.A372fs	TATAGCAAACTCT	.	78	12	82	0	.	0	0	0	0	0
MROH8	140699	bcgsc.ca	37	20	35769661	35769661	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	.	.	.	.	.	GGTATCAAATGTA	.	19	5	34	0	.	0	0	0	0	0
DZIP3	9666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	108324275	108324275	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	DZIP3-91	NM_014648	exon2	c.22delT	p.F8fs	.	.	96	20	94	0	.	0	0	0	0	0
LIPH	200879	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	185241864	185241865	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	LIPH-92	NM_139248	exon5	c.712_713del	p.238_238del	.	.	63	24	60	0	.	0	0	0	0	0
OGN	4969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	95148550	95148550	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	OGN-492	NM_033014	exon6	c.659delT	p.L220fs	.	.	50	16	55	0	.	0	0	0	0	0
CYP4F2	8529	broad.mit.edu;bcgsc.ca	37	19	16003152	16003153	+	Frame_Shift_Ins	INS	-	-	ATAT	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	CYP4F2-92	NM_001082	exon5	c.492_493insATAT	p.M164fs	AATCTTCATATAG	.	186	22	258	0	.	0	0	0	0	0
MIA	8190	ucsc.edu	37	19	41282923	41282924	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	MIA-651	NM_001202553	exon4	c.C312A	p.P104Q	TTTCCCCAGTAGC	.	37	4	65	2	.	0	0	0	0	0