Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
RPL22	6146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6246873	6246873	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	RPL22-650	NM_000983	exon4	c.T246A	p.Y82X	TTTCAAATACCTG	.	81	17	69	0	.	6	3	3	0	0
KIF1B	23095	broad.mit.edu	37	1	10352150	10352150	+	Silent	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	KIF1B-93	NM_183416	exon15	c.A1422G	p.G474G	AGATGGAGGAACC	.	197	4	155	0	.	0	0	0	0	0
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27094329	27094329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ARID1A-584	NM_006015	exon11	c.G3037A	p.E1013K	TTGTATGAGCTGG	.	142	32	159	0	.	0	0	0	0	0
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu	37	1	144856892	144856892	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	PDE4DIP-663	NM_014644	exon40	c.A6593G	p.K2198R	AGCAGCTTGCCCT	.	124	8	126	1	.	0	0	0	0	0
SEC22B	9554	broad.mit.edu	37	1	145112418	145112418	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	.	.	.	.	.	GTTGTGCTCGAAG	.	87	8	76	1	.	0	0	0	0	0
ADAR	103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154574720	154574720	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ADAR-157	NM_001111	exon2	c.T398A	p.L133Q	ATACTCAGTTCCT	.	102	25	150	0	.	4	3	1	0	0
FCRL4	83417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	157559028	157559028	+	Silent	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	FCRL4-229	NM_031282	exon3	c.A273G	p.P91P	ACTTCGTGGGGAG	.	165	32	154	0	.	0	0	0	0	0
MPZL1	9019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	167745333	167745333	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	MPZL1-516	NM_003953	exon5	c.A638C	p.K213T	CAGTTAAGCAGGC	.	93	12	99	0	.	16	6	10	0	0
CACYBP	27101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	174979129	174979129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	CACYBP-90	NM_014412	exon6	c.G601T	p.D201Y	TATGAAGATGGAG	.	68	17	60	0	.	61	36	25	0	0
RGS16	6004	ucsc.edu	37	1	182569597	182569597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	RGS16-227	NM_002928	exon5	c.G439A	p.A147T	CTGTGGCAGTCTG	.	126	1	130	0	.	4	4	0	0	0
NAV1	89796	hgsc.bcm.edu	37	1	201762968	201762968	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	NAV1-228	NM_020443	exon14	c.C3370G	p.R1124G	ACATCCCGCCTGC	.	99	5	88	0	.	0	0	0	0	0
KIN	22944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7825098	7825098	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	KIN-230	NM_012311	exon2	c.G155C	p.R52T	AGTTGTCTCTGAT	.	61	8	49	0	.	6	4	2	0	0
PLCE1	51196	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	95849076	95849076	+	Silent	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	PLCE1-229	NM_001165979	exon1	c.A225G	p.V75V	TGAGGTACCCAAT	.	169	66	198	0	.	0	0	0	0	0
BEST1	7439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	61730354	61730354	+	Silent	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	BEST1-90	NM_004183	exon10	c.C1728T	p.A576A	TTGGGCCTTGGAA	.	91	13	103	0	.	0	0	0	0	0
MAML2	84441	hgsc.bcm.edu	37	11	95825431	95825431	+	Silent	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	MAML2-850	NM_032427	exon2	c.A1764G	p.Q588Q	TTGCTGTTGGGTG	.	6	3	5	0	.	2	2	0	0	0
C12orf57	113246	broad.mit.edu;ucsc.edu	37	12	7055012	7055012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	C12orf57-90	NM_138425	exon3	c.A308G	p.K103R	AGCTGAAGGCGCT	.	36	4	30	0	.	218	156	62	0	0
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	21962862	21962862	+	Silent	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ABCC9-96	NM_005691	exon35	c.C4239T	p.C1413C	ATCTGTGCATTTG	.	127	24	94	0	.	2	2	0	0	0
C2CD5	9847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	22666235	22666235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	.	NM_014802	exon9	c.A1031G	p.E344G	CTCTGTTCCAACG	.	187	31	163	0	.	0	0	0	0	0
CAPRIN2	65981	hgsc.bcm.edu;bcgsc.ca	37	12	30886574	30886574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	CAPRIN2-92	NM_023925	exon5	c.T881C	p.V294A	GTTCCTACCACTG	.	219	13	200	0	.	0	0	0	0	0
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52761009	52761009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	KRT85-91	NM_002283	exon1	c.T181C	p.S61P	CGCAGGAGCCCAG	.	58	11	79	0	.	0	0	0	0	0
SYCP3	50511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	102127436	102127436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	SYCP3-90	NM_001177949	exon6	c.G370C	p.E124Q	AATATTCTTGGTT	.	89	12	73	0	.	0	0	0	0	0
USPL1	10208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	31233386	31233386	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	USPL1-524	NM_005800	exon9	c.A3172C	p.K1058Q	CCGATGAAGACTG	.	110	20	92	0	.	25	15	10	0	0
ITM2B	9445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48833064	48833064	+	Silent	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ITM2B-90	NM_021999	exon5	c.A696G	p.Q232Q	ACTGCAACGCAGA	.	83	13	54	0	.	5724	3938	1779	4	3
RYR3	6263	ucsc.edu	37	15	34152846	34152846	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	RYR3-520	NM_001036	exon101	c.C14350T	p.R4784X	CAAGTACGAGAAG	.	17	4	25	0	.	0	0	0	0	0
ZP2	7783	hgsc.bcm.edu	37	16	21213523	21213523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ZP2-91	NM_003460	exon11	c.A1189G	p.R397G	CCACCCTCAGAGT	.	60	3	44	0	.	0	0	0	0	0
EDC4	23644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67910484	67910484	+	Silent	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	EDC4-92	NM_014329	exon3	c.G333A	p.K111K	AAGCAAGGCCCGG	.	78	15	71	0	.	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	263688	263688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	C17orf97-91	NM_001013672	exon2	c.C1054T	p.L352F	GAGGCCCTCAAGG	.	127	12	125	2	.	244	227	17	0	0
ALKBH5	54890	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18111630	18111630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ALKBH5-90	NM_017758	exon4	c.C1105T	p.R369C	TACTGGCGCAAGT	.	160	15	144	1	.	18	17	1	0	0
ADAP2	55803	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29261209	29261209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ADAP2-91	NM_018404	exon5	c.G404A	p.R135Q	GTAACCGAGAAGG	.	73	16	53	0	.	0	0	0	0	0
BRCA1	672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41244817	41244817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	BRCA1-3415	NM_007300	exon10	c.G2731A	p.G911R	TCTTTCCTTGATT	.	146	24	145	0	.	0	0	0	0	0
NPEPPS	9520	hgsc.bcm.edu;broad.mit.edu	37	17	45668145	45668145	+	Silent	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	NPEPPS-90	NM_006310	exon10	c.A1158G	p.V386V	GTGTGTAGACCAC	.	329	33	266	0	.	71	65	6	0	0
MSI2	124540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	55754379	55754379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	MSI2-658	NM_138962	exon13	c.G977A	p.G326E	CAAATGGATACCA	.	252	80	173	0	.	0	0	0	0	0
NACA2	342538	ucsc.edu	37	17	59668146	59668146	+	Silent	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	NACA2-91	NM_199290	exon1	c.T396C	p.S132S	TTGCTGAGATAAA	.	297	2	264	0	.	0	0	0	0	0
EXOC7	23265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74081426	74081426	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	EXOC7-90	NM_001145297	exon16	c.A1834T	p.I612F	GCTCAATGTGCTC	.	40	14	30	0	.	101	42	59	0	0
APCDD1	147495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	10487626	10487626	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	APCDD1-90	NM_153000	exon5	c.C1136G	p.A379G	CCACAGCCTCACT	.	95	15	135	0	.	0	0	0	0	0
VAV1	7409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6833546	6833546	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	VAV1-1276	NM_005428	exon17	c.T1618G	p.F540V	GGTACCTTCTATC	.	203	25	167	0	.	0	0	0	0	0
RBM42	79171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36128157	36128157	+	Silent	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	RBM42-90	NM_024321	exon9	c.G1233A	p.K411K	GGCCAAGGTGATC	.	88	14	79	1	.	213	103	110	0	0
HNRNPUL1	11100	bcgsc.ca	37	19	41807610	41807610	+	Splice_Site	SNP	G	G	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	HNRNPUL1-69	NM_144732	exon11	c.1387+1G>C	.	TGAAAGGTAGGAA	.	61	8	62	0	.	2	2	0	0	0
IRGC	56269	hgsc.bcm.edu	37	19	44223048	44223048	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	IRGC-70	NM_019612	exon2	c.C338G	p.P113R	ACCTGCCAGGAGC	.	38	2	50	2	.	0	0	0	0	0
ERCC1	2067	hgsc.bcm.edu	37	19	45926544	45926544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ERCC1-659	NM_001983	exon2	c.A89G	p.E30G	GGGACCTCATCCT	.	41	3	37	0	.	18	18	0	0	0
PPP2R1A	5518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52724382	52724382	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	PPP2R1A-1666	NM_014225	exon12	c.T1514C	p.I505T	TCTGCATCAATGT	.	180	43	211	2	.	0	0	0	0	0
ZNF132	7691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58945194	58945194	+	Silent	SNP	T	T	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ZNF132-92	NM_003433	exon3	c.A1617T	p.G539G	CTTTTCTCCAGTG	.	112	22	107	0	.	0	0	0	0	0
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	215865500	215865500	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ABCA12-99	NM_173076	exon22	c.A3108C	p.Q1036H	TCCAGTTTGCAAT	.	183	41	166	0	.	0	0	0	0	0
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219222364	219222364	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	C2orf62-68	NM_198559	exon3	c.C226T	p.Q76X	AAATACCAGGAAA	.	93	16	103	0	.	8	8	0	0	0
ZNF142	7701	hgsc.bcm.edu;bcgsc.ca	37	2	219509115	219509115	+	Silent	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ZNF142-137	NM_001105537	exon8	c.T2124A	p.T708T	TGGCTCAGTCACA	.	65	12	91	0	.	1	1	0	0	0
SEC23B	10483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	18496315	18496315	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	SEC23B-91	NM_032985	exon4	c.A301T	p.I101L	GGAGGCATATCTG	.	102	14	103	0	.	4	2	2	0	0
RPL3	6122	ucsc.edu	37	22	39711372	39711372	+	Splice_Site	SNP	A	A	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	RPL3-154	NM_001033853	exon6	c.541+2T>G	.	AAGCTCACCTTTG	.	138	1	171	0	.	0	0	0	0	0
SLC25A38	54977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	39431018	39431018	+	Silent	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	SLC25A38-90	NM_017875	exon2	c.C102T	p.G34G	GTGTGGCTCCATC	.	116	27	126	0	.	12	9	3	0	0
TNFSF10	8743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	172232704	172232704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	TNFSF10-662	NM_003810	exon2	c.A217G	p.M73V	TGTTCATACTCTC	.	176	41	130	0	.	225	141	84	0	0
ACOX3	8310	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	8372681	8372681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ACOX3-90	NM_003501	exon17	c.C1937T	p.P646L	TCAGGAGGAGCGA	.	59	12	68	0	.	16	4	12	0	0
BOD1L1	259282	broad.mit.edu	37	4	13616069	13616069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	.	NM_148894	exon4	c.C925A	p.Q309K	TTTCCTGTTGAAC	.	34	7	30	0	.	1	0	1	0	0
CENPC1	1060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	68385012	68385012	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	CENPC1-205	NM_001812	exon6	c.G540C	p.K180N	CTCTCTCTTTTGG	.	138	36	106	0	.	0	0	0	0	0
RNF150	57484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	141832440	141832440	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	RNF150-227	NM_020724	exon6	c.C1056G	p.N352K	GATCTGGTTGGTG	.	111	14	105	0	.	0	0	0	0	0
DNAH5	1767	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	13928214	13928214	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	DNAH5-182	NM_001369	exon3	c.A266T	p.E89V	TCTGCTTCCTCCA	.	102	18	84	0	.	0	0	0	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140772927	140772927	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	.	NM_014004	exon1	c.C547T	p.Q183X	GACGTGCAGACTG	.	74	8	80	0	.	0	0	0	0	0
LRRC16A	55604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	25600730	25600730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	LRRC16A-137	NM_001173977	exon33	c.C3308A	p.P1103H	GTCCACCTGTGGA	.	85	25	113	2	.	3	2	1	0	0
HLA-F	3134	ucsc.edu	37	6	29692860	29692860	+	Silent	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	HLA-F-22	NM_001098479	exon4	c.C663T	p.T221T	GGCCACCCTGAGG	.	70	1	87	0	.	6928	6913	6	6	3
HLA-F	3134	ucsc.edu	37	6	29692866	29692866	+	Silent	SNP	G	G	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	HLA-F-22	NM_001098479	exon4	c.G669A	p.R223R	CCTGAGGTGCTGG	.	70	1	89	0	.	6379	6368	3	4	4
KLC4	89953	broad.mit.edu;ucsc.edu	37	6	43042368	43042368	+	Silent	SNP	G	G	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	KLC4-94	NM_201523	exon16	c.G1872T	p.R624R	CTCCCGGGGCCTC	.	80	10	108	2	.	0	0	0	0	0
LMBRD1	55788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	70462182	70462182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	LMBRD1-91	NM_018368	exon4	c.A374G	p.E125G	TCCTTTTCTTCAT	.	77	16	71	0	.	6	3	3	0	0
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152673335	152673335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	SYNE1-607	NM_182961	exon70	c.A11407G	p.T3803A	GGACAGTGCTGGT	.	261	44	217	0	.	0	0	0	0	0
TMEM248	55069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	66410208	66410208	+	Silent	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	.	NM_017994	exon3	c.T405C	p.H135H	CACCCATCTGTAC	.	247	43	244	0	.	22	11	11	0	0
DOCK4	9732	hgsc.bcm.edu	37	7	111387432	111387432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	DOCK4-26	NM_014705	exon42	c.T4457C	p.L1486P	CTAATCAGAGTCT	.	40	2	53	0	.	0	0	0	0	0
ING3	54556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	120595620	120595620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ING3-515	NM_019071	exon4	c.A209G	p.Y70C	ACTACTATAAAGC	.	36	5	30	0	.	0	0	0	0	0
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	6302006	6302006	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	MCPH1-229	NM_001172574	exon8	c.A763T	p.I255F	GGATCCATTAATG	.	89	23	89	0	.	2	2	0	0	0
IKBKB	3551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	42173753	42173753	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	IKBKB-1164	NM_001556	exon10	c.T826A	p.W276R	GAGAAGTGGCTGC	.	48	10	68	0	.	2	2	0	0	0
FBXL6	26233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145579793	145579793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	FBXL6-658	NM_012162	exon8	c.A1307G	p.Q436R	CACTTCTGGGTCA	.	156	30	181	0	.	27	16	11	0	0
SVEP1	79987	broad.mit.edu	37	9	113198779	113198779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	SVEP1-75	NM_153366	exon28	c.G4645A	p.G1549S	ACGCACCACCACC	.	24	6	47	0	.	0	0	0	0	0
PEAK1	0	broad.mit.edu;bcgsc.ca	37	15	77406883	77406886	+	Frame_Shift_Del	DEL	TCCC	TCCC	-	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	TCCC	TCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	.	NM_024776	exon8	c.4853_4856del	p.1618_1619del	GTGTATTCCCTCT	.	31	9	49	0	.	0	0	0	0	0
SP100	6672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	231338157	231338157	+	Splice_Site	DEL	T	T	-	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	SP100-94	NM_003113	exon16	c.1546+2T>-	.	.	.	135	23	126	0	.	0	0	0	0	0
LNP1	348801	broad.mit.edu	37	3	100148586	100148588	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	LNP1-22	NM_001085451	exon2	c.13_15del	p.5_5del	CACAAAGATGATG	.	830	8	659	0	.	0	0	0	0	0
DNAH8	1769	broad.mit.edu;bcgsc.ca	37	6	38843585	38843585	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	DNAH8-615	NM_001206927	exon53	c.7839delG	p.E2613fs	GTATGAGTTTTAT	.	48	7	67	0	.	0	0	0	0	0
TRAF5	7188	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	211545951	211545952	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	TRAF5-661	NM_145759	exon11	c.1581_1582insC	p.H527fs	.	.	118	20	118	0	.	0	0	0	0	0
TEKT1	83659	broad.mit.edu;bcgsc.ca	37	17	6718552	6718553	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	TEKT1-92	NM_053285	exon5	c.559_560insT	p.I187fs	AGCAGATATCATC	.	249	36	195	0	.	0	0	0	0	0
CPNE9	151835	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	9758767	9758768	+	Targeted_Region	INS	-	-	T	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	CPNE9-70	.	.	.	.	.	.	102	21	95	0	.	0	0	0	0	0
SLC22A13	9390	broad.mit.edu;bcgsc.ca	37	3	38307615	38307616	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	SLC22A13-91	NM_004256	exon1	c.264_265insC	p.P88fs	CCGGCCACCCCCC	.	48	7	66	0	.	0	0	0	0	0