Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
VPS13D	55187	bcgsc.ca	37	1	12304650	12304650	+	Silent	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	VPS13D-95	NM_015378	exon5	c.T423C	p.V141V	CGTAGTTACAAGG	.	92	4	99	0	.	6	6	0	0	0
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62550317	62550317	+	Silent	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	INADL-94	NM_176877	exon33	c.C4374T	p.P1458P	CACACCCTTGGTA	.	109	31	120	1	.	0	0	0	0	0
LY9	4063	broad.mit.edu	37	1	160783509	160783509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LY9-91	NM_001261457	exon3	c.G538A	p.V180M	TGCTCCGTGAAGG	.	131	5	135	0	.	0	0	0	0	0
LRRC52	440699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	165514059	165514059	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LRRC52-91	NM_001005214	exon1	c.C526G	p.L176V	ACTACTCTGGAGA	.	188	52	200	0	.	0	0	0	0	0
DIEXF	27042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	210015618	210015618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DIEXF-91	NM_014388	exon9	c.G1494A	p.M498I	TTTGATGAATCAC	.	67	17	60	0	.	0	0	0	0	0
LARP4B	23185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	858887	858887	+	Silent	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LARP4B-92	NM_015155	exon18	c.T2196C	p.T732T	GGGGGGAGTGCTC	.	111	34	113	0	.	14	7	7	0	0
PITRM1	10531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	3191832	3191832	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PITRM1-91	NM_014889	exon16	c.T1852G	p.F618V	TGCAGAAGAGGGG	.	280	78	338	0	.	85	47	38	0	0
CSGALNACT2	55454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	43651227	43651227	+	Silent	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CSGALNACT2-69	NM_018590	exon2	c.A630G	p.K210K	AGAGAAACTGATA	.	71	17	85	0	.	8	6	2	0	0
POLR3A	11128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	79741971	79741971	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	POLR3A-90	NM_007055	exon28	c.G3700C	p.A1234P	TGACTGCCCGCAG	.	115	34	89	0	.	10	5	5	0	0
KIAA1598	57698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	118689489	118689489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	KIAA1598-90	NM_001258299	exon10	c.G883A	p.E295K	CATTTTCTAGTTG	.	137	35	148	0	.	11	11	0	0	0
KIAA1598	57698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	118689491	118689491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	KIAA1598-90	NM_001258299	exon10	c.T881C	p.L294P	TTTTCTAGTTGCT	.	133	34	146	0	.	10	10	0	0	0
GLRX3	10539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	131964822	131964822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	GLRX3-22	NM_006541	exon5	c.G530T	p.S177I	AGTTTAGCAGTTT	.	131	31	162	0	.	37	15	22	0	0
LRRC56	115399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	552211	552211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LRRC56-91	NM_198075	exon12	c.C1160T	p.A387V	TCAGGGCCTGGAG	.	78	25	72	0	.	11	6	5	0	0
OR51A7	119687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4929158	4929158	+	Silent	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	OR51A7-70	NM_001004749	exon1	c.C559T	p.L187L	ATGAAGCTGGCCT	.	163	51	181	1	.	0	0	0	0	0
TPP1	1200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6640045	6640045	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TPP1-90	NM_000391	exon3	c.T191G	p.L64R	TGCACCAGCTCCG	.	88	24	112	0	.	150	91	59	0	0
F2	2147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46740795	46740795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	F2-93	NM_000506	exon1	c.G10A	p.V4I	GCGCACGTCCGAG	.	45	14	50	0	.	0	0	0	0	0
LRFN4	78999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66627368	66627368	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LRFN4-90	NM_024036	exon2	c.T1610A	p.L537X	TGGCCTTGCTGGT	.	31	13	32	0	.	1	1	0	0	0
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877690	82877690	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PCF11-23	NM_015885	exon5	c.A1751T	p.N584I	AGGAGAATGTAGA	.	83	14	81	0	.	10	9	1	0	0
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82878314	82878314	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PCF11-23	NM_015885	exon6	c.G1965C	p.E655D	TAAAGAGTTAACT	.	80	20	88	0	.	3	3	0	0	0
TRIM49	57093	hgsc.bcm.edu	37	11	89537575	89537575	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TRIM49-84	NM_020358	exon3	c.C63G	p.Y21X	TATGAAGTAGTTC	.	111	28	117	0	.	0	0	0	0	0
RPUSD4	84881	broad.mit.edu	37	11	126079570	126079570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	RPUSD4-153	NM_001144827	exon3	c.G403A	p.A135T	TCTTTGCCAGGAT	.	285	6	279	1	.	16	16	0	0	0
SLC6A13	6540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	346349	346349	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SLC6A13-90	NM_016615	exon6	c.G671C	p.W224S	CCCTTCCAGATGC	.	123	30	190	0	.	37	21	16	0	0
DCP1B	196513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2064679	2064679	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DCP1B-91	NM_152640	exon6	c.C570G	p.I190M	GTCATAGATGGCA	.	207	69	256	0	.	7	5	2	0	0
DDX47	51202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12980185	12980185	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DDX47-226	NM_016355	exon11	c.A1112C	p.D371A	GGTATGATGTGGA	.	126	42	133	0	.	0	0	0	0	0
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	26810769	26810769	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ITPR2-542	NM_002223	exon18	c.T2063A	p.I688N	TCATCAATGTCAT	.	108	33	119	0	.	0	0	0	0	0
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40265609	40265609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SLC2A13-515	NM_052885	exon5	c.A1189G	p.S397G	CTAAACTACCAAA	.	90	33	83	0	.	0	0	0	0	0
CCNT1	904	broad.mit.edu	37	12	49088009	49088009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CCNT1-418	NM_001240	exon9	c.C988T	p.P330S	TGCCCGGCAACAT	.	113	4	104	0	.	11	11	0	0	0
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57891971	57891971	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	MARS-654	NM_004990	exon8	c.A802C	p.I268L	GTGCTCATCACCA	.	89	28	128	0	.	39	23	16	0	0
PEBP1	5037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	118577332	118577332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PEBP1-779	NM_002567	exon3	c.G322T	p.G108C	TATGTGGGCTCGG	.	89	16	98	0	.	702	430	272	0	0
PSPC1	55269	hgsc.bcm.edu;bcgsc.ca	37	13	20356720	20356720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PSPC1-135	NM_001042414	exon2	c.G178A	p.E60K	CCATCTCCTCGTC	.	76	24	39	0	.	9	7	2	0	0
SUPT16H	11198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	21821861	21821861	+	Splice_Site	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SUPT16H-90	NM_007192	exon25	c.2920+1G>A	.	GACTAACCTGACT	.	147	36	161	0	.	3	0	3	0	0
OR4E2	26686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	22133796	22133796	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	OR4E2-94	NM_001001912	exon1	c.C500G	p.P167R	GTCTACCTTACTG	.	183	58	195	1	.	0	0	0	0	0
NIN	51199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	51219341	51219341	+	Silent	SNP	T	T	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NIN-229	NM_020921	exon21	c.A4845T	p.T1615T	CATTTCTGTTAGA	.	540	165	579	0	.	46	25	21	0	0
MNAT1	4331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	61434986	61434986	+	Silent	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	MNAT1-523	NM_002431	exon8	c.T849C	p.L283L	GGACCTTGCTGGA	.	145	51	112	0	.	14	7	7	0	0
PAPLN	89932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	73733497	73733497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PAPLN-70	NM_173462	exon24	c.T3377C	p.L1126S	GGCTATTGTGTGT	.	29	8	31	0	.	78	36	42	0	0
DLK1	8788	broad.mit.edu	37	14	101198410	101198410	+	Silent	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DLK1-949	NM_003836	exon4	c.C294T	p.A98A	CTGTGCCAACAAC	.	83	3	64	0	.	0	0	0	0	0
ACSBG1	23205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	78474881	78474881	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ACSBG1-91	NM_015162	exon7	c.A821C	p.N274T	CACTGGTTGGGCT	.	45	8	59	2	.	0	0	0	0	0
SOLH	6650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	599030	599030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SOLH-523	NM_005632	exon5	c.G1487A	p.G496E	CTCCCGGGCCCGA	.	156	33	166	0	.	32	21	11	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	2	2	1	1	T|0.007;C|0.993	9	0	9	0	0
CORO7	79585	ucsc.edu	37	16	4405363	4405363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CORO7-90	NM_024535	exon27	c.C2696T	p.A899V	ACCATGGCATTCA	.	41	4	60	0	.	0	0	0	0	0
TMEM186	25880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	8890423	8890423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TMEM186-91	NM_015421	exon2	c.A28G	p.R10G	GAAACCTACGCAC	.	94	24	67	0	.	40	30	10	0	0
SPNS1	83985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	28989282	28989282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SPNS1-90	NM_001142451	exon3	c.A361G	p.R121G	GGTGACAGGTACA	.	175	79	166	0	.	101	37	64	0	0
MT1B	4490	ucsc.edu	37	16	56686910	56686910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	MT1B-90	NM_005947	exon3	c.G119A	p.G40D	CCGTGGGCTGTGC	.	251	1	204	1	.	0	0	0	0	0
PMFBP1	83449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72198700	72198700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PMFBP1-92	NM_031293	exon3	c.A128G	p.N43S	AGCTGATTGTCCT	.	185	81	128	0	.	0	0	0	0	0
AIPL1	23746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	6328845	6328845	+	Missense_Mutation	SNP	C	C	T	rs201875142	alternate_allele	TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	AIPL1-90	NM_014336	exon6	c.G1090A	p.A364T	GCCCTGCGGACAG	.	150	65	115	0	.	0	0	0	0	0
AIPL1	23746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	6328868	6328868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	AIPL1-90	NM_014336	exon6	c.C1067T	p.T356I	GGTGCTGTGGGTG	.	171	79	144	0	.	0	0	0	0	0
SLC35G6	643664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7386125	7386125	+	Silent	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_001102614	exon2	c.C822T	p.V274V	TGCGGTCACCAAG	.	211	30	213	1	.	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	626	86	545	73	.	79	18	61	0	0
FLCN	201163	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17119717	17119717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	FLCN-1292	NM_144997	exon11	c.T1277C	p.I426T	GGGGGGATCTGCA	.	41	6	37	0	.	10	8	2	0	0
MYO15A	51168	hgsc.bcm.edu	37	17	18063318	18063318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	MYO15A-97	NM_016239	exon55	c.A9373G	p.T3125A	GACAATACCAGCT	.	35	2	28	0	.	0	0	0	0	0
ZNF207	7756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	30687743	30687743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ZNF207-90	NM_003457	exon4	c.C434A	p.P145Q	CACAGCCAGGACT	.	69	13	48	1	.	134	97	37	0	0
KRTAP4-6	81871	broad.mit.edu	37	17	39296329	39296329	+	Silent	SNP	T	T	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_030976	exon1	c.A411C	p.P137P	GCAGGTTGGCTGG	.	67	4	48	0	.	0	0	0	0	0
SKAP1	8631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	46266785	46266785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SKAP1-90	NM_003726	exon5	c.G358A	p.D120N	CAATACCTTTGCT	.	118	24	108	0	.	0	0	0	0	0
FN3KRP	79672	broad.mit.edu	37	17	80674717	80674717	+	Missense_Mutation	SNP	G	G	A	rs138953335		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	FN3KRP-115	NM_024619	exon1	c.G86A	p.R29Q	AGGGCCGGAGCTA	.	56	3	50	0	G|1.000;A|0.000	19	19	0	0	0
PTPRM	5797	broad.mit.edu	37	18	8376563	8376563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PTPRM-228	NM_001105244	exon26	c.C3430T	p.R1144W	GAGCTGCGGTCAC	.	67	4	84	0	.	39	39	0	0	0
TMX3	54495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	66378637	66378637	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TMX3-91	NM_019022	exon3	c.T105G	p.F35L	TTCTTTAAACCTA	.	92	37	124	0	.	0	0	0	0	0
ATP8B3	148229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1785678	1785678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_138813	exon26	c.G3183T	p.K1061N	CTCCGGCTTCTCC	.	28	7	25	0	.	1	1	0	0	0
SUGP2	10147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19115397	19115397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SUGP2-91	NM_014884	exon7	c.C2509A	p.L837I	GACATAGTTCAAA	.	153	41	147	0	.	11	6	5	0	0
ALDH16A1	126133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49969107	49969107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ALDH16A1-91	NM_153329	exon13	c.G1681A	p.G561S	GCTGAGGGTGGAG	.	55	13	69	0	.	44	21	22	0	1
ZNF836	162962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52659397	52659397	+	Silent	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ZNF836-46	NM_001102657	exon5	c.C1539T	p.L513L	TCGAGTGAGTAAT	.	109	29	131	0	.	3	3	0	0	0
NLRP11	204801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56329449	56329449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NLRP11-169	NM_145007	exon4	c.C92A	p.A31E	TTGCGTGCCAGAT	.	113	28	129	0	.	0	0	0	0	0
KHK	3795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27322367	27322367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	KHK-115	NM_006488	exon7	c.T733C	p.F245L	GATGCTTTCCCGC	.	98	27	133	0	.	5	5	0	0	0
DNAJC5G	285126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27503082	27503082	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DNAJC5G-226	NM_173650	exon6	c.A569T	p.X190L	ATTTTTAAGAGAT	.	215	64	244	0	.	0	0	0	0	0
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	33359941	33359941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LTBP1-230	NM_206943	exon5	c.A1115C	p.N372T	GTCAGAACAGCTG	.	74	23	63	0	.	19	18	1	0	0
IMMT	10989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	86371396	86371396	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	IMMT-91	NM_006839	exon15	c.G2272C	p.E758Q	CTCACTCTGGCTG	.	65	21	58	0	.	103	56	47	0	0
ASTL	431705	broad.mit.edu;bcgsc.ca	37	2	96789883	96789883	+	Silent	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ASTL-90	NM_001002036	exon9	c.C1002G	p.P334P	AGGAACGGGCTGG	.	112	6	120	0	.	0	0	0	0	0
POTEE	445582	hgsc.bcm.edu;broad.mit.edu	37	2	132020929	132020929	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_001083538	exon15	c.T1901G	p.L634R	CTTAGCTTTCTCT	.	46	6	55	0	.	0	0	0	0	0
NEB	4703	hgsc.bcm.edu	37	2	152553243	152553243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NEB-145	NM_004543	exon17	c.T1477C	p.Y493H	CTTTGTAGGTGTG	.	44	3	40	0	.	0	0	0	0	0
CWC22	57703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	180810243	180810243	+	Silent	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CWC22-90	NM_020943	exon20	c.T2340C	p.P780P	TGTTATAGGATCT	.	272	71	289	0	.	15	9	6	0	0
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	212295693	212295693	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ERBB4-1461	NM_001042599	exon21	c.G2620T	p.E874X	TGTACTCTTTTTC	.	185	54	200	0	.	0	0	0	0	0
ARPC2	10109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219103554	219103554	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ARPC2-91	NM_005731	exon5	c.T436A	p.Y146N	ATCCATTATAGGG	.	105	31	112	2	.	320	207	113	0	0
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	239988463	239988463	+	Silent	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	HDAC4-291	NM_006037	exon24	c.T2943A	p.I981I	GTCGCAAATGGCG	.	124	31	139	0	.	2	1	1	0	0
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242433435	242433435	+	Silent	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	FARP2-93	NM_014808	exon27	c.G3060C	p.V1020V	GGAGGTGATCCAG	.	96	22	113	0	.	0	0	0	0	0
BPIFB2	80341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31601760	31601760	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_025227	exon5	c.C453G	p.N151K	CAGTAACAGGTGG	.	46	16	49	0	.	0	0	0	0	0
ZNF341	84905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	32376706	32376706	+	Silent	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ZNF341-92	NM_032819	exon13	c.G1869T	p.A623A	GTCTGCGTTCAAC	.	57	19	67	0	.	2	1	1	0	0
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	40730779	40730779	+	Silent	SNP	G	G	A	rs146474971		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PTPRT-664	NM_133170	exon27	c.C3756T	p.N1252N	TGCTGCGTTGATG	.	102	19	109	0	G|0.998;A|0.002	0	0	0	0	0
MIS18A	54069	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	33651272	33651272	+	Silent	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	MIS18A-90	NM_018944	exon1	c.G54A	p.E18E	GCCGCACTCACAG	.	69	16	76	0	.	3	2	1	0	0
SON	6651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34922663	34922663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SON-97	NM_032195	exon3	c.T1126C	p.S376P	GAGTCGTCGGTGG	.	93	26	153	0	.	30	19	11	0	0
PICK1	9463	broad.mit.edu	37	22	38461040	38461040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PICK1-226	NM_012407	exon4	c.G185A	p.G62D	TGGACGGCACAGT	.	138	4	140	1	.	32	32	0	0	0
DENND6B	414918	hgsc.bcm.edu	37	22	50752671	50752671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_001001794	exon13	c.A1103G	p.K368R	GAAGGCTTTTTCA	.	33	2	41	0	.	28	28	0	0	0
EOMES	8320	hgsc.bcm.edu	37	3	27762953	27762953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	EOMES-156	NM_005442	exon1	c.T833C	p.L278P	AATTTGAGCCACA	.	27	2	25	0	.	1	1	0	0	0
CLASP2	23122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	33552091	33552091	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CLASP2-93	NM_015097	exon37	c.C4303A	p.L1435I	GGTTTAGGGTTTC	.	74	13	93	0	.	23	15	8	0	0
USP19	10869	broad.mit.edu;ucsc.edu	37	3	49155544	49155544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	USP19-663	NM_001199160	exon3	c.C134T	p.S45F	TATCGAGACCCTG	.	13	3	24	0	.	0	0	0	0	0
LAMB2	3913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49159166	49159166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LAMB2-93	NM_002292	exon30	c.C5051T	p.A1684V	TCTTCTGCTGTAG	.	152	43	163	0	.	246	171	75	0	0
ABI3BP	25890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	100593699	100593699	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ABI3BP-138	NM_015429	exon9	c.T917G	p.L306R	GTCTTGAGTGCAT	.	14	3	18	0	.	0	0	0	0	0
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121260262	121260262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	POLQ-664	NM_199420	exon3	c.G408T	p.M136I	CTTCCGCATTTCC	.	296	82	335	1	.	0	0	0	0	0
TNFSF10	8743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	172227069	172227069	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TNFSF10-662	NM_003810	exon4	c.C356G	p.P119R	CTCTGAGGACCTC	.	109	25	113	0	.	552	223	328	1	0
YEATS2	55689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183508727	183508727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	YEATS2-138	NM_018023	exon21	c.T3056C	p.V1019A	CCCTCGTGCCTAC	.	89	26	131	1	.	16	7	9	0	0
FGF12	2257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	192078247	192078247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	FGF12-949	NM_021032	exon2	c.G280T	p.D94Y	TCCCATCAATGGT	.	79	20	82	0	.	9	9	0	0	0
MUC4	4585	broad.mit.edu	37	3	195505813	195505813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	MUC4-90	NM_018406	exon2	c.A12638G	p.D4213G	GAAGTGTCGGTGA	.	13	3	15	0	.	14	14	0	0	0
SPON2	10417	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	1165206	1165206	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SPON2-90	NM_012445	exon3	c.T289A	p.F97I	CCGCAAAGTCGCG	.	52	8	65	0	.	275	136	139	0	0
UVSSA	57654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1347115	1347115	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_020894	exon5	c.A848C	p.E283A	CAGATGAGGACGA	.	23	6	25	0	.	2	1	1	0	0
KIAA1109	84162	bcgsc.ca	37	4	123109048	123109048	+	Splice_Site	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	KIAA1109-80	NM_015312	exon7	c.628-2A>T	.	TTTTTTAGGGACG	.	74	7	74	2	.	0	0	0	0	0
TBC1D9	23158	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	141560501	141560501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TBC1D9-23	NM_015130	exon14	c.A2419G	p.T807A	TCGTAGTATCCTC	.	19	4	33	0	.	21	13	8	0	0
ARHGEF28	64283	broad.mit.edu;bcgsc.ca	37	5	73161823	73161823	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_001080479	exon18	c.C2137T	p.Q713X	AAACCACAGACCA	.	27	4	34	0	.	6	4	2	0	0
TMEM161B	153396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	87521633	87521633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TMEM161B-92	NM_153354	exon4	c.T242C	p.I81T	AGGTCAATATCCT	.	150	30	130	0	.	6	2	4	0	0
GALNT10	55568	broad.mit.edu	37	5	153755873	153755873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	GALNT10-92	NM_198321	exon5	c.T605C	p.L202P	TGGCCCTTTTCCC	.	190	4	188	0	.	23	23	0	0	0
LCP2	3937	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	169724562	169724562	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LCP2-23	NM_005565	exon1	c.C54G	p.D18E	AAGGCTGTCGGGG	.	15	3	23	0	.	9	9	0	0	0
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176639042	176639042	+	Silent	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NSD1-188	NM_022455	exon5	c.T3642C	p.L1214L	CATACTTGAGGAA	.	55	18	58	0	.	14	7	7	0	0
NUP153	9972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	17688708	17688708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NUP153-637	NM_005124	exon2	c.C253T	p.H85Y	CCAGATGGTCCTC	.	128	39	189	0	.	20	12	8	0	0
ZNF184	7738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27420017	27420017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ZNF184-91	NM_007149	exon6	c.A1321G	p.T441A	CCCCAGTATGAGT	.	157	49	192	0	.	8	5	3	0	0
RGL2	5863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33260849	33260849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	RGL2-662	NM_004761	exon16	c.A1951G	p.I651V	GGATGATACGGCA	.	440	148	409	0	.	30	18	12	0	0
RPS10-NUDT3	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	34309651	34309651	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_001202470	exon6	c.A555C	p.E185D	ACAGACTTCACGA	.	56	12	65	0	.	3	0	3	0	0
ENPP4	22875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	46108114	46108114	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ENPP4-94	NM_014936	exon2	c.T794G	p.L265W	TAGATTTGAGCCC	.	66	16	87	0	.	27	15	12	0	0
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	83862020	83862020	+	Silent	SNP	T	T	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DOPEY1-155	NM_015018	exon30	c.T6063A	p.P2021P	ATCACCTGCAATG	.	55	17	71	0	.	7	4	3	0	0
CDC40	51362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	110528715	110528715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CDC40-90	NM_015891	exon4	c.C413T	p.A138V	GTTATGCATTAGA	.	176	50	182	0	.	0	0	0	0	0
SLC16A10	117247	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	111409219	111409219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SLC16A10-514	NM_018593	exon1	c.G264T	p.Q88H	CATCCAGAACGCT	.	44	10	48	0	.	0	0	0	0	0
BRAT1	221927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	2587034	2587034	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	BRAT1-229	NM_152743	exon3	c.G206C	p.S69T	CCAGAACTCAGGT	.	108	49	101	0	.	59	28	31	0	0
SCIN	85477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	12679988	12679988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SCIN-24	NM_001112706	exon11	c.G1427A	p.G476D	CCCAAGGCAAAGA	.	91	38	35	0	.	362	148	214	0	0
DNAH11	8701	ucsc.edu;bcgsc.ca	37	7	21784089	21784089	+	Missense_Mutation	SNP	G	G	A	rs28549882	alternate_allele	TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DNAH11-146	.	.	.	.	TTAAAAGGTCCAC	.	513	156	328	0	G|0.995;T|0.005	0	0	0	0	0
FBXO24	26261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100187679	100187679	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	FBXO24-229	NM_012172	exon2	c.A233C	p.Q78P	CCATCCAGTTGTT	.	153	54	109	1	.	0	0	0	0	0
IMMP2L	83943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	111127299	111127299	+	Silent	SNP	T	T	A	rs201012120	alternate_allele	TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	IMMP2L-93	NM_032549	exon3	c.A234T	p.S78S	CACCAATGATACA	.	208	67	121	0	T|1.000;C|0.000	0	0	0	0	0
SSPO	23145	hgsc.bcm.edu;broad.mit.edu	37	7	149509420	149509420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_198455	exon69	c.G9818A	p.R3273Q	GCCTGCGGAGCCG	.	21	5	17	0	.	0	0	0	0	0
ATP6V1B2	526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	20068802	20068802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ATP6V1B2-90	NM_001693	exon6	c.C578T	p.S193F	TCTTCTCTGCTGC	.	87	30	64	1	.	118	83	35	0	0
SFTPC	6440	bcgsc.ca	37	8	22020986	22020986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SFTPC-90	NM_003018	exon4	c.G362T	p.C121F	CCTGCTGCTACAT	.	44	4	40	0	.	0	0	0	0	0
PROSC	11212	broad.mit.edu	37	8	37630321	37630321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PROSC-90	NM_007198	exon5	c.C368T	p.A123V	AGTTGGCAGACAA	.	137	4	161	0	.	79	79	0	0	0
RRS1	23212	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	67342373	67342373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	RRS1-90	NM_015169	exon1	c.G1007A	p.G336E	GGAAAGGGGGCTT	.	103	27	81	0	.	8	3	5	0	0
EMC2	9694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	109462688	109462688	+	Silent	SNP	A	A	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_014673	exon3	c.A186T	p.A62A	GATTGCAGCACTA	.	157	35	171	0	.	73	45	28	0	0
COLEC10	10584	broad.mit.edu	37	8	120114630	120114630	+	Silent	SNP	A	A	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	COLEC10-229	NM_006438	exon4	c.A336G	p.K112K	AGAAAAAGGCAAA	.	69	4	88	0	.	0	0	0	0	0
C9orf72	203228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	27548367	27548367	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	C9orf72-517	NM_018325	exon11	c.A1313T	p.D438V	GTTAAATCAAGGT	.	143	27	107	0	.	4	4	0	0	0
CCIN	881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	36170075	36170075	+	Silent	SNP	C	C	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CCIN-92	NM_005893	exon1	c.C576T	p.L192L	CGTGCTCAATGAA	.	83	32	87	2	.	0	0	0	0	0
SPATA31D1	389763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84605892	84605892	+	Silent	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_001001670	exon4	c.G507A	p.S169S	GTCATCGTTCACT	.	73	18	79	0	.	0	0	0	0	0
PHF2	5253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	96416716	96416716	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PHF2-91	NM_005392	exon7	c.A811C	p.I271L	TATCTCATCAGGC	.	63	17	79	0	.	13	9	4	0	0
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	107599352	107599352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ABCA1-1016	NM_005502	exon11	c.C1220A	p.A407D	AACACAGCCAGTT	.	53	14	69	0	.	21	18	3	0	0
NUP188	23511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131755475	131755475	+	Splice_Site	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NUP188-207	NM_015354	exon26	c.2641-1G>A	.	CCACCAGGTGGCC	.	88	22	69	0	.	1	0	1	0	0
USP20	10868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	132618631	132618631	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	USP20-658	NM_001008563	exon4	c.T127A	p.C43S	TGGGCCTGTCTGC	.	215	60	225	0	.	0	0	0	0	0
ABL1	25	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	133730265	133730265	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ABL1-3810	NM_007313	exon3	c.G388C	p.V130L	GGCTGGGTCCCAA	.	72	15	69	0	.	46	34	12	0	0
ABL1	25	broad.mit.edu	37	9	133750315	133750315	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ABL1-3810	NM_007313	exon7	c.T1203G	p.F401L	TGATTTTGGCCTG	.	119	3	137	0	.	42	42	0	0	0
AK8	158067	hgsc.bcm.edu;broad.mit.edu	37	9	135601117	135601117	+	Missense_Mutation	SNP	G	G	C	rs184476196	alternate_allele	TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	AK8-90	NM_152572	exon13	c.C1398G	p.I466M	ACTCTCGATGTAT	.	9	3	16	0	G|0.999;A|0.001	11	5	6	0	0
HDAC6	10013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48682180	48682180	+	Silent	SNP	G	G	A	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	HDAC6-230	NM_006044	exon26	c.G3288A	p.R1096R	ATCTAGGGGCCTC	.	17	12	19	0	.	39	3	36	0	0
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	109695935	109695935	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	RGAG1-132	NM_020769	exon3	c.T2090G	p.M697R	CACTAATGAGAGC	.	33	20	40	0	.	0	0	0	0	0
OR2L8	391190	hgsc.bcm.edu	37	1	248112762	248112763	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	OR2L8-70	NM_001001963	exon1	c.603_604del	p.201_202del	.	.	69	14	57	0	.	0	0	0	0	0
AP1G2	8906	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24036472	24036472	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	AP1G2-45	NM_003917	exon2	c.52delG	p.A18fs	.	.	70	15	63	0	.	0	0	0	0	0
VPS9D1	9605	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	89776218	89776219	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_004913	exon11	c.1354_1355del	p.452_452del	.	.	183	31	171	0	.	0	0	0	0	0
RINL	126432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39359912	39359925	+	Frame_Shift_Del	DEL	TGCAGCGTCCGCCT	TGCAGCGTCCGCCT	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	TGCAGCGTCCGCCT	TGCAGCGTCCGCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	RINL-91	NM_001195833	exon11	c.1600_1613del	p.534_538del	.	.	101	19	117	0	.	0	0	0	0	0
SLC35G2	80723	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	136573495	136573495	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_025246	exon2	c.193delG	p.G65fs	.	.	162	36	146	0	.	0	0	0	0	0
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	155180741	155180741	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DCHS2-94	NM_017639	exon20	c.5380delG	p.A1794fs	.	.	205	45	185	0	.	0	0	0	0	0
MAP7	9053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	136693761	136693761	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	MAP7-90	NM_001198609	exon8	c.844delT	p.S282fs	.	.	116	24	93	0	.	0	0	0	0	0
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	146264642	146264642	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SHPRH-92	NM_173082	exon9	c.1875delA	p.Q625fs	.	.	234	64	206	0	.	0	0	0	0	0
NFX1	4799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	33319104	33319106	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NFX1-91	NM_147134	exon9	c.1885_1887del	p.629_629del	.	.	61	22	56	0	.	0	0	0	0	0
STRIP1	85369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110587506	110587507	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_033088	exon11	c.1331_1332insTA	p.F444fs	.	.	107	30	127	0	.	0	0	0	0	0
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	78513435	78513436	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NAV3-279	NM_014903	exon15	c.3459_3460insG	p.G1153fs	.	.	73	20	68	0	.	0	0	0	0	0