Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 SKI 6497 hgsc.bcm.edu 37 1 2160390 2160390 + Missense_Mutation SNP C C G rs28384811 TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . SKI-838 NM_003036 exon1 c.C185G p.A62G TGCCGGCGCCGGT . 6 4 0 0 C|0.953;G|0.047 0 0 0 0 0 MCOLN3 55283 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 85491894 85491894 + Silent SNP G G C novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . MCOLN3-91 NM_018298 exon8 c.C906G p.L302L AATGCAGAGGATT . 116 44 132 0 . 2 2 0 0 0 LCE3D 84648 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 152552161 152552161 + Silent SNP G G A novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . LCE3D-68 NM_032563 exon2 c.C252T p.C84C ATGGCCGCAGCCA . 251 86 280 2 . 0 0 0 0 0 BCAN 63827 broad.mit.edu 37 1 156615922 156615922 + Missense_Mutation SNP G G C novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . BCAN-516 NM_198427 exon2 c.G76C p.E26Q GTTCTGGAAGGAG . 62 3 55 0 . 33 33 0 0 0 CHD4 1108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 6711561 6711561 + Missense_Mutation SNP C C G novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . CHD4-228 NM_001273 exon3 c.G203C p.S68T CGCTTGCTCTTAG . 417 127 520 0 . 82 57 25 0 0 LNX2 222484 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 28143269 28143269 + Silent SNP G G A novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . LNX2-228 NM_153371 exon3 c.C552T p.G184G CACTGCGCCTGTC . 346 119 339 1 . 20 9 11 0 0 KLHL1 57626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 70549759 70549759 + Missense_Mutation SNP C C G novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . KLHL1-90 NM_020866 exon2 c.G673C p.A225P TATGTGCAGGTAT . 157 50 136 0 . 0 0 0 0 0 AHNAK2 113146 ucsc.edu 37 14 105418145 105418145 + Missense_Mutation SNP G G A novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . AHNAK2-47 NM_138420 exon7 c.C3643T p.P1215S AAGGGGGCTGAAT . 45 1 90 0 . 137 97 40 0 0 UBE3A 7337 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 25616649 25616649 + Missense_Mutation SNP T T A novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . UBE3A-660 NM_000462 exon7 c.A681T p.L227F AGGGCCTAATTTT . 231 80 226 0 . 75 41 34 0 0 CCDC78 124093 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 775528 775528 + Missense_Mutation SNP G G T novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . CCDC78-91 NM_001031737 exon4 c.C320A p.T107N TGGCTGGTGCCAT . 58 20 47 0 . 0 0 0 0 0 SNX29 92017 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 12618621 12618621 + Silent SNP C C T novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . SNX29-23 NM_032167 exon20 c.C2241T p.N747N CATGAACAAAGTC . 110 40 128 0 . 80 41 39 0 0 ABCC11 85320 ucsc.edu 37 16 48210875 48210875 + Silent SNP G G A novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . ABCC11-95 NM_033151 exon24 c.C3498T p.R1166R GTGGCCGCGGATG . 42 4 48 0 . 0 0 0 0 0 GP1BA 2811 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 4837738 4837738 + Silent SNP A A G novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . . NM_000173 exon2 c.A1839G p.V613V GTGGGTACGGCCT . 176 75 194 1 . 7 5 2 0 0 ODF4 146852 broad.mit.edu 37 17 8243446 8243446 + Missense_Mutation SNP A A G novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . ODF4-69 NM_153007 exon1 c.A77G p.E26G GAAAGGAAAGGAA . 67 4 94 0 . 0 0 0 0 0 TVP23C 201158 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA . 443 62 365 46 . 66 6 60 0 0 FAM83G 644815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 18881233 18881233 + Missense_Mutation SNP T T A novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . FAM83G-69 NM_001039999 exon5 c.A1746T p.E582D ATCATCTTCTTCT . 131 44 156 0 . 15 5 10 0 0 CDK5R1 8851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 30815101 30815101 + Silent SNP C C T novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . CDK5R1-651 NM_003885 exon2 c.C463T p.L155L CGCTGCCTGGGTG . 68 26 85 0 . 3 2 1 0 0 ZNF700 90592 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 12060395 12060395 + Missense_Mutation SNP C C G novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . ZNF700-90 NM_001271848 exon4 c.C1565G p.S522C TTTATTCTGCCAA . 66 33 88 0 . 20 9 11 0 0 CHERP 10523 hgsc.bcm.edu 37 19 16640580 16640580 + Silent SNP T T C novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . CHERP-92 NM_006387 exon8 c.A1008G p.Q336Q CTGCTGTTGCTGC . 49 4 46 2 . 6934 263 6670 0 1 IL4I1 259307 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 50393785 50393785 + Silent SNP C C T novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . IL4I1-523 NM_172374 exon10 c.G912A p.L304L GTTCAACAGCACA . 50 21 42 0 . 17 11 6 0 0 ZNF615 284370 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 52496292 52496292 + Silent SNP C C A rs146634089 alternate_allele TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . ZNF615-95 NM_001199324 exon7 c.G2070T p.P690P TTTGTACGGTTTC . 201 83 205 2 C|1.000;T|0.000 8 5 3 0 0 TRIM28 10155 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 59057198 59057198 + Missense_Mutation SNP G G A novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . TRIM28-870 NM_005762 exon3 c.G521A p.C174Y CTCTGTGTGAGAC . 94 37 129 0 . 153 81 72 0 0 TRAPPC12 51112 hgsc.bcm.edu 37 2 3391827 3391827 + Missense_Mutation SNP G G C rs145175293 by1000genomes;alternate_allele TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . . NM_016030 exon2 c.G433C p.A145P GAAGCCGCGCGCC . 4 4 2 1 G|0.999;A|0.001 5 0 5 0 0 ACTG2 72 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 74128513 74128513 + Silent SNP T T C novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . ACTG2-90 NM_001199893 exon2 c.T75C p.D25D AGGAGATGATGCC . 95 32 69 1 . 0 0 0 0 0 SULT1C4 27233 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 108994906 108994906 + Missense_Mutation SNP T T C novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . SULT1C4-22 NM_006588 exon1 c.T113C p.I38T ATAAGATCTGGAA . 315 134 289 0 . 293 135 158 0 0 KRTAP26-1 388818 hgsc.bcm.edu;broad.mit.edu 37 21 31692296 31692296 + Missense_Mutation SNP G G A novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . KRTAP26-1-69 NM_203405 exon1 c.C58T p.R20C TATGGCGGGAGGT . 63 5 77 1 . 0 0 0 0 0 PKDREJ 10343 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 46654232 46654232 + Missense_Mutation SNP A A T novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . PKDREJ-156 NM_006071 exon1 c.T4988A p.M1663K ATACGCATTCCAT . 110 43 94 1 . 0 0 0 0 0 ROBO1 6091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 78683096 78683096 + Missense_Mutation SNP C C A novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . ROBO1-67 NM_002941 exon24 c.G3470T p.S1157I GTACTACTGCCCC . 155 38 128 0 . 0 0 0 0 0 KIAA2018 205717 hgsc.bcm.edu 37 3 113376148 113376148 + Missense_Mutation SNP T T G novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . KIAA2018-93 NM_001009899 exon7 c.A4381C p.K1461Q GCTGCTTTATGTA . 105 7 52 0 . 6 6 0 0 0 SSR3 6747 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 156266708 156266708 + Missense_Mutation SNP C C A novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . SSR3-90 NM_007107 exon3 c.G345T p.K115N TTTCTCCTTCCGA . 116 26 77 0 . 4 3 1 0 0 HELQ 113510 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 84342848 84342848 + Silent SNP A A G novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . HELQ-155 NM_133636 exon15 c.T2817C p.F939F AAGAACAAAAGAC . 61 26 58 0 . 9 4 5 0 0 BHMT 635 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 78415091 78415091 + Missense_Mutation SNP T T C novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . BHMT-91 NM_001713 exon3 c.T176C p.L59P GCCAGCTTCATCG . 112 42 98 0 . 0 0 0 0 0 PGGT1B 5229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 114573574 114573574 + Missense_Mutation SNP G G A novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . PGGT1B-90 NM_005023 exon4 c.C460T p.L154F GCTGAAGGGCTCT . 188 79 161 0 . 28 16 12 0 0 WDR55 54853 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140049032 140049032 + Silent SNP T T C novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . WDR55-91 NM_017706 exon7 c.T945C p.H315H TGGCCATGACCAG . 45 18 36 0 . 37 24 13 0 0 FGFR4 2264 broad.mit.edu;ucsc.edu 37 5 176522539 176522539 + Silent SNP C C T novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . FGFR4-1460 NM_002011 exon13 c.C1636T p.L546L GGGCCCCTGTACG . 13 3 17 0 . 0 0 0 0 0 RUNX2 860 hgsc.bcm.edu 37 6 45390482 45390482 + Missense_Mutation SNP C C G novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . RUNX2-417 NM_001024630 exon3 c.C211G p.Q71E CAGCAGCAGGAGG . 41 3 53 0 . 1 1 0 0 0 REV3L 5980 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 111632330 111632330 + Missense_Mutation SNP A A T novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . REV3L-294 NM_002912 exon29 c.T8737A p.Y2913N CTCTGTATTCCTT . 267 91 258 0 . 32 20 12 0 0 ACTB 60 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 5567465 5567465 + Missense_Mutation SNP A A G novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . ACTB-226 NM_001101 exon6 c.T1042C p.S348P ACAGCGAGGCCAG . 136 59 156 1 . 7075 3918 3155 2 0 MET 4233 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 116423474 116423474 + Missense_Mutation SNP T T C rs121913245 TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . MET-5874 NM_001127500 exon19 c.T3803C p.M1268T AGTGGATGGCTTT . 61 25 61 0 . 495 254 241 0 0 ARHGEF5 7984 hgsc.bcm.edu 37 7 144060273 144060273 + Missense_Mutation SNP G G C novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . ARHGEF5-229 NM_005435 exon2 c.G511C p.E171Q GAAGAGGAAACCT . 603 101 620 1 . 43 40 3 0 0 TOPORS 10210 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 32543270 32543270 + Missense_Mutation SNP T T C novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . TOPORS-230 NM_005802 exon3 c.A1253G p.D418G GTTTCATCATCCC . 140 59 156 0 . 38 22 16 0 0 SPTAN1 6709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 131361264 131361264 + Missense_Mutation SNP G G T novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . SPTAN1-158 NM_003127 exon26 c.G3542T p.R1181M TGCCCAGGGTAAG . 129 57 131 0 . 1 1 0 0 0 AGPAT2 10555 bcgsc.ca 37 9 139581687 139581687 + Silent SNP G G A novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . AGPAT2-90 NM_001012727 exon1 c.C123T p.S41S CACGGCGGACACC . 68 6 70 0 . 61 60 0 1 0 SPRED2 200734 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 65561771 65561771 + Frame_Shift_Del DEL C C - novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . SPRED2-659 NM_181784 exon3 c.341delG p.G114fs . . 192 68 198 0 . 0 0 0 0 0 LRP2 4036 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 170145584 170145584 + Frame_Shift_Del DEL A A - novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . LRP2-175 NM_004525 exon9 c.994delT p.C332fs . . 142 41 136 0 . 0 0 0 0 0 NFE2L3 9603 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 26223344 26223347 + Frame_Shift_Del DEL TTCT TTCT - novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 TTCT TTCT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . NFE2L3-94 NM_004289 exon3 c.774_777del p.258_259del . . 129 39 110 0 . 0 0 0 0 0 TNC 3371 hgsc.bcm.edu 37 9 117808884 117808922 + In_Frame_Del DEL CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG - novel TCGA-DZ-6135-01A-11D-1961-08 TCGA-DZ-6135-10A-01D-1962-08 CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 555a55c5-0299-42ea-b192-fd3595ea0aec 0d8c5c0b-123a-491f-a521-4dfea8a0d89d . TNC-517 NM_002160 exon17 c.4892_4930del p.1631_1644del . . 89 22 140 0 . 0 0 0 0 0