Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ZCCHC17	51538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	31836979	31836979	+	Missense_Mutation	SNP	A	A	C	rs111803813	alternate_allele	TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	ZCCHC17-91	NM_016505	exon8	c.A665C	p.D222A	CAAAAGACAGCAA	.	133	23	99	0	G|1.000;|0.000	41	32	9	0	0
ADAM30	11085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	120436921	120436921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	ADAM30-228	NM_021794	exon1	c.G2039A	p.G680E	ATCGCCCCTCTGA	.	95	31	65	0	.	0	0	0	0	0
AIM2	9447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	159033450	159033450	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	AIM2-93	NM_004833	exon5	c.G831C	p.K277N	GTTTTTCTTCTTT	.	199	60	167	0	.	2	2	0	0	0
GLUL	2752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182356292	182356292	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	GLUL-90	NM_001033056	exon3	c.T302A	p.V101D	TTGAAAACTTCAC	.	106	10	109	0	.	194	164	30	0	0
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1099777	1099777	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	MUC2-90	NM_002457	exon41	c.T7362C	p.P2454P	GGGACCTGACAAT	.	137	54	174	0	.	0	0	0	0	0
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	9000291	9000291	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	A2ML1-93	NM_144670	exon15	c.C1830T	p.R610R	CAACCGCTCTGTG	.	199	15	173	0	.	0	0	0	0	0
DDX12P	440081	ucsc.edu	37	12	9578146	9578146	+	RNA	SNP	G	G	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	.	.	.	.	.	CAGTGGGGAAGCT	.	81	2	86	3	.	8	8	0	0	0
TMEM5	10329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	64174892	64174892	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	TMEM5-90	NM_014254	exon2	c.T263G	p.L88X	AAATATTAGATAA	.	247	85	163	0	.	23	14	9	0	0
PPP1R12A	4659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	80203769	80203769	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	PPP1R12A-273	NM_002480	exon10	c.A1261C	p.I421L	GAGAAATTTTTGT	.	70	21	45	0	.	31	22	9	0	0
P2RX7	5027	hgsc.bcm.edu	37	12	121622232	121622232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	P2RX7-268	NM_002562	exon13	c.A1415G	p.D472G	CCAGGGATAGCCC	.	68	4	77	0	.	13	13	0	0	0
PCDH8	5100	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	53422307	53422307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	PCDH8-153	NM_032949	exon1	c.G265A	p.G89S	CCAGGCCGGCGTC	.	96	35	91	0	.	0	0	0	0	0
CCDC88C	440193	hgsc.bcm.edu	37	14	91776235	91776235	+	Silent	SNP	C	C	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	CCDC88C-25	NM_001080414	exon16	c.G2832C	p.L944L	CAACAGCAGCTCC	.	31	2	42	0	.	1	1	0	0	0
MAGEL2	54551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	23890238	23890238	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	.	NM_019066	exon1	c.G2652C	p.K884N	GGTGGCCTTGCCG	.	111	13	107	0	.	0	0	0	0	0
MGRN1	23295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4700468	4700468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	MGRN1-92	NM_001142291	exon2	c.G191T	p.G64V	TCCTGGGCAGCCG	.	140	46	182	0	.	54	34	20	0	0
CMTM1	113540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	66612903	66612903	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	CMTM1-90	NM_052999	exon4	c.G860A	p.X287X	CCGCCTGAAGCCA	.	101	38	95	0	.	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	456	68	351	57	.	46	8	38	0	0
TTLL6	284076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	46862380	46862380	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	TTLL6-90	NM_001130918	exon13	c.A1945C	p.N649H	TGAGATTGATATT	.	228	94	222	1	.	34	15	19	0	0
EPX	8288	broad.mit.edu;bcgsc.ca	37	17	56274480	56274480	+	Missense_Mutation	SNP	C	C	T	rs143329228		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	EPX-92	NM_000502	exon7	c.C982T	p.R328W	CGCAACCGGACCA	.	214	11	148	0	C|1.000;T|0.000	0	0	0	0	0
C17orf62	79415	ucsc.edu	37	17	80405455	80405455	+	Splice_Site	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	C17orf62-90	NM_001100407	exon5	c.127+1G>A	.	GCTTTACCTCCGC	.	85	1	56	0	.	3	3	0	0	0
MTIF2	4528	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55473595	55473595	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	MTIF2-91	NM_002453	exon10	c.C984T	p.G328G	ATTATCGCCCTTT	.	83	10	62	0	.	0	0	0	0	0
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	207171574	207171574	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	ZDBF2-3	NM_020923	exon5	c.G2322A	p.R774R	AGAACGGCACATT	.	340	54	263	0	.	5	2	3	0	0
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	215865517	215865517	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	ABCA12-99	NM_173076	exon22	c.G3091C	p.A1031P	TGATTGCTCTTTC	.	226	78	191	0	.	13	6	7	0	0
SIRPG	55423	ucsc.edu	37	20	1629910	1629910	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	SIRPG-23	NM_001039508	exon2	c.G218C	p.G73A	TCCCGGCCTGGTC	.	135	2	127	0	.	0	0	0	0	0
COL20A1	57642	hgsc.bcm.edu	37	20	61944243	61944243	+	Missense_Mutation	SNP	A	A	G	rs143321165		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	COL20A1-90	NM_020882	exon16	c.A2033G	p.Y678C	TTGTCTACCAGAT	.	6	5	5	1	A|0.994;G|0.006	0	0	0	0	0
GART	2618	broad.mit.edu	37	21	34877874	34877874	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	GART-91	NM_001136005	exon20	c.T2719G	p.W907G	CATTCCACTTTTG	.	90	4	74	0	.	0	0	0	0	0
ZBTB21	49854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43413770	43413770	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	.	NM_001098402	exon3	c.A435G	p.Q145Q	TCTCTTTTGAGAA	.	130	56	112	0	.	4	3	1	0	0
KRTAP10-10	353333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46057373	46057373	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	KRTAP10-10-90	NM_181688	exon1	c.C39T	p.C13C	CGCCTGCACTGAC	.	201	37	219	0	.	0	0	0	0	0
NGLY1	55768	ucsc.edu	37	3	25770623	25770623	+	Splice_Site	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	NGLY1-135	NM_001145295	exon11	c.1611+1G>A	.	AAGTTACCATGTG	.	133	1	97	0	.	0	0	0	0	0
TRIM71	131405	ucsc.edu	37	3	32932841	32932841	+	Silent	SNP	G	G	A	rs200564131		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	TRIM71-92	NM_001039111	exon4	c.G2145A	p.L715L	GATCCTGGTCTCA	.	45	4	52	1	G|0.999;A|0.001	6	6	0	0	0
HTT	3064	hgsc.bcm.edu	37	4	3076696	3076696	+	Silent	SNP	T	T	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	HTT-281	NM_002111	exon1	c.T144G	p.P48P	GCCGCCTCCTCAG	.	3	2	0	0	.	0	0	0	0	0
PTPN13	5783	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	87691259	87691259	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	PTPN13-230	NM_080685	exon30	c.C4725T	p.V1575V	GGAAGTCATATCT	.	36	9	44	0	.	0	0	0	0	0
DAPP1	27071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	100787246	100787246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	DAPP1-93	NM_014395	exon8	c.G742C	p.D248H	GAAGCTGATGAGT	.	63	13	52	0	.	3	3	0	0	0
LRBA	987	hgsc.bcm.edu	37	4	151231474	151231474	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	LRBA-157	NM_006726	exon53	c.C7789G	p.H2597D	GGGAATGCACTTG	.	44	3	69	0	.	39	39	0	0	0
GALNT7	51809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	174225146	174225146	+	Splice_Site	SNP	G	G	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	GALNT7-90	NM_017423	exon8	c.1267-1G>A	.	TTCATAGATATGG	.	178	57	135	0	.	0	0	0	0	0
ARSK	153642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	94922371	94922371	+	Missense_Mutation	SNP	A	A	G	rs201849642		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	ARSK-91	NM_198150	exon5	c.A805G	p.K269E	TTTACAAAAAAAG	.	86	20	53	0	A|0.999;G|0.001	2	2	0	0	0
C1QTNF2	114898	broad.mit.edu;bcgsc.ca	37	5	159781881	159781881	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	C1QTNF2-91	NM_031908	exon2	c.C273T	p.G91G	TGGGGGGCCGGGT	.	23	10	29	0	.	1	1	0	0	0
DNAH11	8701	ucsc.edu	37	7	21856097	21856097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	DNAH11-146	.	.	.	.	ATTCCACTAACCG	.	27	11	17	0	.	0	0	0	0	0
DOCK4	9732	broad.mit.edu;bcgsc.ca	37	7	111368620	111368620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	DOCK4-26	NM_014705	exon52	c.G5611A	p.E1871K	ACTGTTCATTCAC	.	124	11	118	0	.	19	17	2	0	0
TEX15	56154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	30694449	30694449	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	TEX15-97	NM_031271	exon3	c.A8202G	p.Q2734Q	TTGAGATTGAAAA	.	104	43	67	0	.	0	0	0	0	0
ZFAT	57623	broad.mit.edu	37	8	135524765	135524765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	ZFAT-90	NM_020863	exon14	c.A3314G	p.Q1105R	GCTGCCTGTGTCC	.	324	6	309	0	.	26	26	0	0	0
FAM47B	170062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	34961454	34961454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	FAM47B-196	NM_152631	exon1	c.G506A	p.R169Q	AGGCCCGGGAGAA	.	36	30	34	0	.	0	0	0	0	0
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53268433	53268433	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	IQSEC2-178	NM_001111125	exon11	c.G3059C	p.S1020T	CGGAAACTGTACG	.	42	33	58	0	.	9	0	9	0	0
WDR37	22884	bcgsc.ca	37	10	1170912	1170915	+	Frame_Shift_Del	DEL	TGTT	TGTT	-	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	TGTT	TGTT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	WDR37-90	NM_014023	exon13	c.1301_1304del	p.434_435del	TGAGACTGTTTGA	.	56	6	70	0	.	0	0	0	0	0
C9orf84	158401	hgsc.bcm.edu;broad.mit.edu	37	9	114454268	114454270	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	C9orf84-92	NM_173521	exon25	c.3795_3797del	p.1265_1266del	.	.	56	10	45	0	.	0	0	0	0	0