Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CYP4A22	284541	ucsc.edu	37	1	47614339	47614339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	CYP4A22-139	NM_001010969	exon12	c.G1430A	p.R477H	TGCTCCGCTTTGA	.	213	3	212	1	.	69	32	37	0	0
SSBP3	23648	hgsc.bcm.edu	37	1	54694017	54694017	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	SSBP3-90	NM_145716	exon17	c.A1048C	p.N350H	TTATGTTGTTAGG	.	104	8	69	1	.	0	0	0	0	0
ST6GALNAC5	81849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	77528824	77528824	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	ST6GALNAC5-92	NM_030965	exon5	c.T944G	p.F315C	TTCACTTTTTTCA	.	153	49	139	0	.	10	10	0	0	0
ST6GALNAC5	81849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	77528835	77528835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	ST6GALNAC5-92	NM_030965	exon5	c.G955A	p.D319N	CAACCAGACTGGA	.	153	46	136	0	.	11	11	0	0	0
PRPF18	8559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	13658431	13658431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	PRPF18-90	NM_003675	exon9	c.A826G	p.N276D	ATTGGAAATGCGC	.	159	46	153	0	.	25	16	9	0	0
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	73066676	73066676	+	Silent	SNP	C	C	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	ARHGEF17-227	NM_014786	exon4	c.C3552G	p.A1184A	GCCTGCCTTTCTC	.	77	29	58	0	.	10	4	6	0	0
HEPHL1	341208	hgsc.bcm.edu	37	11	93806328	93806328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	HEPHL1-71	NM_001098672	exon7	c.T1370C	p.L457P	GAATTCTTGGTAC	.	40	2	38	0	.	0	0	0	0	0
AMOTL1	154810	broad.mit.edu;ucsc.edu	37	11	94532582	94532582	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	AMOTL1-91	NM_130847	exon3	c.T226G	p.S76A	TTCCACTCCCCAA	.	13	8	10	0	.	2	2	0	0	0
MCF2L	23263	bcgsc.ca	37	13	113728835	113728835	+	Silent	SNP	G	G	A	rs146333822	byfrequency;alternate_allele	TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	MCF2L-228	NM_001112732	exon10	c.G1074A	p.E358E	TGTGGAGCACCTG	.	94	6	143	0	G|0.999;C|0.001	14	13	1	0	0
FMN1	342184	hgsc.bcm.edu	37	15	33066522	33066522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	FMN1-23	NM_001103184	exon17	c.A3580G	p.T1194A	TAGTGGTCACACT	.	34	2	23	0	.	0	0	0	0	0
RAB11A	8766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	66180113	66180113	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	RAB11A-227	NM_004663	exon5	c.G586C	p.V196L	AATGTGGTTCCTA	.	130	15	122	0	.	178	147	31	0	0
GSPT1	2935	hgsc.bcm.edu	37	16	12009529	12009529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	GSPT1-206	NM_001130006	exon1	c.A49G	p.S17G	TGCTGCTCCCGCC	.	5	2	7	2	.	1	1	0	0	0
RSPRY1	89970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57265132	57265132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	RSPRY1-91	NM_133368	exon13	c.A1430G	p.N477S	AGTTCAATTTTGG	.	89	27	72	0	.	13	5	8	0	0
CLDN7	1366	broad.mit.edu	37	17	7163815	7163815	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	CLDN7-91	NM_001307	exon4	c.T514G	p.S172A	GGGCAGACCCTGC	.	34	20	29	5	.	454	442	12	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	591	72	381	44	.	23	0	23	0	0
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	15935762	15935762	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	NCOR1-229	NM_006311	exon46	c.C7171G	p.R2391G	GCATCCGCATAGT	.	214	41	139	0	.	66	49	17	0	0
RND2	8153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41180521	41180521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	RND2-227	NM_005440	exon5	c.G508A	p.V170I	CGCAGCGTCAGGG	.	113	30	112	0	.	4	1	3	0	0
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74005355	74005355	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	EVPL-93	NM_001988	exon22	c.A3931C	p.K1311Q	CCGTCTTGGTCTC	.	432	94	451	0	.	16	10	6	0	0
FASN	2194	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80053200	80053200	+	Silent	SNP	G	G	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	FASN-90	NM_004104	exon3	c.C276T	p.D92D	ACCTCCGTCCACG	.	101	13	106	0	.	0	0	0	0	0
ZNF536	9745	broad.mit.edu	37	19	31039693	31039693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	ZNF536-144	NM_014717	exon4	c.C3167T	p.S1056L	TGCCCTCGTTACA	.	120	7	117	0	.	0	0	0	0	0
MEGF8	1954	ucsc.edu;bcgsc.ca	37	19	42861619	42861619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	MEGF8-23	NM_001271938	exon28	c.T4894C	p.S1632P	GGCCTGTCTCTGC	.	100	33	131	2	.	7	1	6	0	0
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56539072	56539072	+	Silent	SNP	C	C	T	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	NLRP5-162	NM_153447	exon7	c.C1473T	p.V491V	GAGCGTCGCCCCC	.	56	25	49	0	.	0	0	0	0	0
CLASP1	23332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	122206659	122206659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	CLASP1-91	NM_001207051	exon17	c.G1561A	p.A521T	GCTCTGCTTCTCT	.	39	12	39	0	.	4	3	1	0	0
ZNF385B	151126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	180309603	180309603	+	Silent	SNP	T	T	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	ZNF385B-23	NM_152520	exon9	c.A1197T	p.A399A	ACTTACTGCTAGA	.	242	72	229	1	.	0	0	0	0	0
ALPP	250	hgsc.bcm.edu	37	2	233244230	233244230	+	Missense_Mutation	SNP	A	A	G	rs1130341		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	ALPP-91	NM_001632	exon4	c.A317G	p.N106S	CATACAATGTAGA	.	28	3	30	0	A|1.000;G|0.000	0	0	0	0	0
USP40	55230	hgsc.bcm.edu	37	2	234450984	234450984	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	USP40-455	NM_018218	exon8	c.A1028C	p.N343T	TTCAGATTCACAT	.	8	3	5	0	.	4	2	2	0	0
TRPC4AP	26133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33591257	33591257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	TRPC4AP-91	NM_015638	exon18	c.C2212A	p.Q738K	AGTGCTGCTGCCA	.	126	36	129	0	.	44	26	18	0	0
KCNQ2	3785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	62078166	62078166	+	Silent	SNP	G	G	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	KCNQ2-92	NM_172106	exon2	c.C321G	p.L107L	CAGCACGAGGCAG	.	172	51	202	0	.	0	0	0	0	0
RFPL2	10739	ucsc.edu	37	22	32598347	32598347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	RFPL2-91	NM_001098527	exon2	c.C92T	p.A31V	ATGTCTGCAAAGT	.	19	4	13	0	.	0	0	0	0	0
CCDC174	51244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	14695999	14695999	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	.	NM_016474	exon2	c.G109C	p.D37H	CTAAAAGATTCTG	.	38	17	30	0	.	12	9	3	0	0
DPH3	285381	hgsc.bcm.edu;bcgsc.ca	37	3	16302327	16302327	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	DPH3-227	NM_206831	exon3	c.G193C	p.V65L	CACACACAAACTG	.	68	4	49	0	.	1	1	0	0	0
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	169337906	169337906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	DDX60L-69	NM_001012967	exon20	c.C2653T	p.L885F	GGAGGAGCTCCCA	.	111	33	82	0	.	6	3	3	0	0
MAP3K1	4214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	56177037	56177037	+	Silent	SNP	T	T	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	MAP3K1-956	NM_005921	exon13	c.T2307A	p.P769P	ATTTCCTGCTGAA	.	76	25	48	0	.	5	2	3	0	0
C4A	720	hgsc.bcm.edu	37	6	31964785	31964785	+	Silent	SNP	T	T	G	rs9501603	bycluster;by2hit2allele;byhapmap	TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	C4A-44	NM_007293	exon29	c.G3856G	p.A1286A	CAGGCTTCGGCCT	.	2	2	4	1	G|1.000;|0.000	502	0	501	0	1
DUS4L	11062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107216872	107216872	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	DUS4L-90	NM_001270419	exon7	c.T541A	p.S181T	GGAGTTTCATGGA	.	114	30	69	0	.	11	9	2	0	0
TRIM24	8805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	138145434	138145434	+	Silent	SNP	G	G	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	TRIM24-1030	NM_003852	exon1	c.G141A	p.A47A	CGAGGCGGCCCGG	.	29	12	23	0	.	1	1	0	0	0
CLU	1191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	27457323	27457323	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	CLU-133	NM_001831	exon7	c.G1138C	p.D380H	ACTGGTCTTCGCC	.	27	10	33	0	.	11724	7197	4516	2	8
FGFR1	2260	ucsc.edu	37	8	38287416	38287416	+	Missense_Mutation	SNP	C	C	T	rs121909640		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	FGFR1-1793	NM_001174067	exon4	c.G241A	p.G81S	GGTCACCGGGGTG	.	40	4	54	0	.	3	3	0	0	0
KAT6A	7994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	41791942	41791942	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	.	NM_001099412	exon18	c.A3796C	p.K1266Q	GCTCCTTGGTTTC	.	12	4	28	0	.	3	2	1	0	0
POP1	10940	hgsc.bcm.edu	37	8	99140760	99140760	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	POP1-154	NM_001145860	exon4	c.C478G	p.Q160E	ATTGCCCAGAAAG	.	79	4	70	1	.	0	0	0	0	0
GPT	2875	broad.mit.edu;bcgsc.ca	37	8	145730807	145730807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	GPT-91	NM_005309	exon5	c.T674C	p.L225P	GTGCACTGGGCCA	.	16	4	31	0	.	20	10	10	0	0
ABL1	25	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	133759489	133759489	+	Silent	SNP	C	C	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	ABL1-3810	NM_007313	exon11	c.C1869A	p.I623I	CTTGATCAAGAAG	.	257	89	258	2	.	20	10	10	0	0
RPS6KA3	6197	hgsc.bcm.edu	37	X	20195138	20195138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	RPS6KA3-1504	NM_004586	exon11	c.A910G	p.K304E	TTCGCTTGAAAAG	.	68	4	39	0	.	5	5	0	0	0
DNAJC16	23341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	15890499	15890500	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	DNAJC16-226	NM_015291	exon10	c.1414_1415del	p.472_472del	.	.	306	86	308	0	.	0	0	0	0	0
PTPRCAP	5790	broad.mit.edu;bcgsc.ca	37	11	67203274	67203287	+	Frame_Shift_Del	DEL	GCAAAGGCGTGCAG	GCAAAGGCGTGCAG	-	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	GCAAAGGCGTGCAG	GCAAAGGCGTGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	PTPRCAP-226	NM_005608	exon2	c.538_551del	p.180_184del	CTGCCAGCAAAGG	.	34	8	42	0	.	0	0	0	0	0
TMEM131	23505	broad.mit.edu	37	2	98427639	98427639	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	TMEM131-74	NM_015348	exon18	c.1920delA	p.K640fs	CTCTAATTTTTTT	.	426	10	309	0	.	0	0	0	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	16957909	16957910	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	CUBN-166	NM_001081	exon46	c.7121_7122insT	p.Y2374fs	.	.	141	51	128	0	.	0	0	0	0	0