Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
FUCA1	2517	hgsc.bcm.edu	37	1	24194770	24194770	+	Missense_Mutation	SNP	C	C	G	rs61996282		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	FUCA1-153	NM_000147	exon1	c.G7C	p.A3P	CCGGAGCCCGCAT	.	11	7	5	1	C|0.960;G|0.040	0	0	0	0	0
MYOM3	127294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24421403	24421403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	MYOM3-93	NM_152372	exon9	c.C868A	p.L290M	ATGACAGGGAGAA	.	51	17	52	2	.	11	6	5	0	0
ARID1A	8289	broad.mit.edu;bcgsc.ca	37	1	27087947	27087947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	ARID1A-584	NM_006015	exon6	c.G2234A	p.S745N	AATCAAGCATTGC	.	108	8	89	0	.	4	4	0	0	0
PEF1	553115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	32100955	32100955	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PEF1-68	NM_012392	exon2	c.G193T	p.G65X	GGTGTCCATAGGG	.	51	18	45	0	.	12	12	0	0	0
WDR65	149465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	43649478	43649478	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	WDR65-91	NM_152498	exon4	c.G691C	p.E231Q	CGTTGGGAGACCA	.	188	50	179	1	.	1	0	1	0	0
DEDD	9191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161092019	161092019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DEDD-90	NM_001039711	exon5	c.T875G	p.L292R	ACCAGCAGCTTGA	.	95	32	95	0	.	61	36	25	0	0
RGS1	5996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	192547354	192547354	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	RGS1-226	NM_002922	exon4	c.G283C	p.G95R	TTAGCTGGTCAAA	.	151	40	187	0	.	2	2	0	0	0
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	208215581	208215581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PLXNA2-92	NM_025179	exon22	c.G4148A	p.R1383Q	TTGCCCCGGTCGC	.	91	30	91	0	.	2	1	1	0	0
NUP133	55746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	229631732	229631732	+	Silent	SNP	G	G	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NUP133-271	NM_018230	exon7	c.C882A	p.I294I	TTTACTGATGTTT	.	74	31	65	0	.	6	6	0	0	0
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	55570392	55570392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PCDH15-193	.	.	.	.	AACAATCGACGGC	.	210	58	213	0	.	0	0	0	0	0
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	91498338	91498338	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	KIF20B-93	NM_016195	exon20	c.A3620C	p.E1207A	TAAAAGAAGAAGA	.	59	23	46	0	.	0	0	0	0	0
TRIM8	81603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104404881	104404881	+	Silent	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	TRIM8-227	NM_030912	exon1	c.C507T	p.Y169Y	CTGCTACTACAGC	.	46	9	42	0	.	53	34	19	0	0
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	48149503	48149503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PTPRJ-541	NM_001098503	exon7	c.C1265T	p.P422L	TCATCCCCGGACT	.	124	42	116	0	.	4	3	1	0	0
NAALADL1	10004	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	64822081	64822081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NAALADL1-90	NM_005468	exon5	c.G733A	p.E245K	CTCGCTCCACTCC	.	35	8	39	0	.	0	0	0	0	0
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117860196	117860196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	IL10RA-91	NM_001558	exon3	c.C228A	p.S76R	CTGTAGCCAGACC	.	140	50	167	1	.	7	7	0	0	0
DDX25	29118	hgsc.bcm.edu	37	11	125786980	125786980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DDX25-227	NM_013264	exon9	c.A872G	p.E291G	TTGCTGAGCGAAT	.	27	2	35	0	.	0	0	0	0	0
PZP	5858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	9356427	9356427	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PZP-157	NM_002864	exon2	c.A204T	p.E68D	CCTGTTTTCCCTG	.	154	51	141	0	.	0	0	0	0	0
DNAJC22	79962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49743366	49743366	+	Silent	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DNAJC22-159	NM_024902	exon2	c.T711C	p.L237L	CCTCCTTCTGCCT	.	277	87	307	0	.	28	13	15	0	0
KRT8	3856	hgsc.bcm.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	KRT8-92	NM_001256282	exon2	c.T175G	p.S59A	TGCGGGAACCGGG	.	47	7	37	1	.	1255	1254	0	1	0
CKAP2	26586	hgsc.bcm.edu	37	13	53042433	53042433	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	CKAP2-92	NM_001098525	exon7	c.C1500G	p.H500Q	GCGACACACGATT	.	27	2	38	0	.	1	1	0	0	0
GPR18	2841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99908051	99908051	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	GPR18-90	NM_001098200	exon2	c.C76G	p.L26V	AGACAAGGGCTGC	.	140	31	142	0	.	0	0	0	0	0
SLC7A8	23428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23607203	23607203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	SLC7A8-91	NM_012244	exon7	c.G943A	p.A315T	TCCAGGCCATGAC	.	113	26	119	0	.	2	2	0	0	0
PPP1R36	145376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	65032084	65032084	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	.	NM_172365	exon5	c.T279A	p.D93E	GACAGATAAAAGA	.	37	13	64	0	.	0	0	0	0	0
EIF2S1	1965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	67848335	67848335	+	Silent	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	EIF2S1-91	NM_004094	exon6	c.T606C	p.Y202Y	TGGTTATGAAGGC	.	166	58	117	0	.	29	15	14	0	0
ELMSAN1	91748	hgsc.bcm.edu	37	14	74186156	74186156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	.	NM_194278	exon12	c.T2986C	p.S996P	CGGCAGACCCAGG	.	40	2	40	0	.	6	6	0	0	0
CHP1	11261	hgsc.bcm.edu	37	15	41535939	41535939	+	Splice_Site	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	.	NM_007236	exon2	c.140+2T>C	.	CTCAGGTAGGCAG	.	39	3	43	0	.	0	0	0	0	0
CACNA1H	8912	hgsc.bcm.edu	37	16	1245531	1245531	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	CACNA1H-67	NM_021098	exon4	c.T511G	p.W171G	GACACGTGGAACA	.	34	2	22	0	.	1	1	0	0	0
NUBP2	10101	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1836594	1836594	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NUBP2-90	NM_012225	exon2	c.G73C	p.G25R	AAGGGGGGCGTTG	.	143	26	127	0	.	29	13	16	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	8	8	0	0	T|0.007;C|0.993	2	0	2	0	0
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27720066	27720066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	KIAA0556-141	NM_015202	exon13	c.T1430C	p.I477T	ATGCCATCTACGT	.	139	28	110	0	.	5	3	2	0	0
SNX20	124460	bcgsc.ca	37	16	50707452	50707452	+	Silent	SNP	G	G	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	SNX20-23	NM_182854	exon4	c.C816A	p.A272A	GACCATGGCGTCC	.	104	6	78	0	.	0	0	0	0	0
CDH15	1013	hgsc.bcm.edu	37	16	89261313	89261313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	CDH15-523	NM_004933	exon14	c.A2195G	p.D732G	CTTACGACACAGC	.	44	3	34	0	.	0	0	0	0	0
CLDN7	1366	broad.mit.edu	37	17	7163815	7163815	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	CLDN7-91	NM_001307	exon4	c.T514G	p.S172A	GGGCAGACCCTGC	.	41	21	33	12	.	692	667	25	0	0
TOP3A	7156	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	18212208	18212208	+	Silent	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	TOP3A-228	NM_004618	exon2	c.T228C	p.H76H	ATACAGATGATAA	.	46	15	35	0	.	0	0	0	0	0
MED1	5469	bcgsc.ca	37	17	37565188	37565188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	MED1-620	NM_004774	exon17	c.A3286G	p.S1096G	GGTGGCTTTTGCT	.	170	5	148	0	.	8	8	0	0	0
EFTUD2	9343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42945230	42945230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	EFTUD2-91	NM_004247	exon13	c.C1094T	p.S365F	CTCTGGGAGCTGC	.	29	17	20	0	.	14	6	8	0	0
WNT3	7473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	44845986	44845986	+	Silent	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	WNT3-522	NM_030753	exon4	c.A768A	p.G256G	GGTCTCCACCCAG	.	174	79	146	0	.	2	0	2	0	0
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	78321576	78321576	+	Silent	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	RNF213-577	NM_001256071	exon29	c.C9441T	p.R3147R	CTTCCGCCTGATT	.	88	6	79	0	.	15	14	1	0	0
DSEL	92126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	65181492	65181492	+	Silent	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DSEL-157	NM_032160	exon2	c.T384C	p.N128N	AATTTCATTCCAC	.	132	41	107	1	.	1	0	1	0	0
CFD	1675	hgsc.bcm.edu;broad.mit.edu	37	19	860929	860929	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	CFD-514	NM_001928	exon3	c.T281G	p.L94R	AGCGCCTGTACGA	.	27	9	23	0	.	82	81	1	0	0
AP3D1	8943	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	2151253	2151253	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	AP3D1-90	NM_001261826	exon1	c.C81G	p.N27K	CTTGTGGTTACGG	.	34	16	29	0	.	3	3	0	0	0
ARHGEF18	23370	hgsc.bcm.edu	37	19	7533786	7533786	+	Missense_Mutation	SNP	G	G	A	rs180746700		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	ARHGEF18-228	NM_001130955	exon17	c.G2992A	p.G998S	CCATCCGGCGTGG	.	15	10	10	2	G|0.999;A|0.000	6	4	2	0	0
PTGER1	5731	broad.mit.edu	37	19	14584193	14584193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PTGER1-658	NM_000955	exon2	c.C940A	p.L314M	TCACCAGCATTGG	.	16	5	16	0	.	0	0	0	0	0
SLC27A1	376497	hgsc.bcm.edu	37	19	17597401	17597401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	SLC27A1-226	NM_198580	exon2	c.T197C	p.L66P	TGCGCCTGGAGCT	.	20	3	18	0	.	1	1	0	0	0
PSMC4	5704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40478461	40478461	+	Silent	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PSMC4-91	NM_006503	exon3	c.A321G	p.T107T	TACCACAGGTGTG	.	46	11	30	0	.	0	0	0	0	0
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42861598	42861598	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	MEGF8-23	NM_001271938	exon28	c.C4873G	p.L1625V	CACACCCTTACTG	.	163	44	182	0	.	1	1	0	0	0
ZNF8	7554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58805588	58805588	+	Silent	SNP	G	G	A	rs35832841	byfrequency;alternate_allele	TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	ZNF8-91	NM_021089	exon4	c.G414A	p.G138G	GTTAGGGAAAGAC	.	38	9	59	1	G|0.995;T|0.005	3	2	1	0	0
LPIN1	23175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	11913751	11913751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	LPIN1-156	NM_001261428	exon6	c.T749C	p.L250P	GAACTCTTCCTAA	.	113	35	127	0	.	0	0	0	0	0
NBAS	51594	hgsc.bcm.edu	37	2	15691633	15691633	+	Silent	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NBAS-94	NM_015909	exon6	c.T363C	p.I121I	CCCAATAATGGAT	.	30	2	33	0	.	0	0	0	0	0
ANAPC1	64682	hgsc.bcm.edu	37	2	112615903	112615903	+	Silent	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	ANAPC1-228	NM_022662	exon11	c.A1338G	p.V446V	GGACTCTACTAAA	.	58	3	66	0	.	0	0	0	0	0
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	137928319	137928319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	THSD7B-75	.	.	.	.	TTTAGAACGAGGC	.	89	11	73	0	.	0	0	0	0	0
IFIH1	64135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	163167397	163167397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	IFIH1-91	NM_022168	exon2	c.T500C	p.L167P	TTTAGTAGCTCTC	.	54	15	55	0	.	6	5	1	0	0
NABP1	64859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	192543405	192543405	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	.	NM_001031716	exon1	c.A65C	p.N22T	ACTTAAATGTCGT	.	100	32	113	0	.	2	1	1	0	0
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198274598	198274598	+	Missense_Mutation	SNP	G	G	T	rs1044635	alternate_allele	TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	SF3B1-140	NM_012433	exon7	c.C800A	p.T267N	CCAGGAGTAGCAG	.	222	78	197	0	G|1.000;A|0.000	38	20	18	0	0
PMEPA1	56937	broad.mit.edu	37	20	56227616	56227616	+	Silent	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PMEPA1-227	NM_020182	exon4	c.G357A	p.L119L	CACGGCCAGGCGG	.	14	3	10	0	.	14	8	6	0	0
COL9A3	1299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61468580	61468580	+	Silent	SNP	C	C	T	rs144216578		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	COL9A3-514	NM_001853	exon30	c.C1749T	p.R583R	ATACCGCGGTCCC	.	82	25	74	1	C|1.000;T|0.000	0	0	0	0	0
DIDO1	11083	ucsc.edu	37	20	61512320	61512320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DIDO1-96	NM_001193369	exon16	c.C4988A	p.P1663Q	CAAGGCGGTGTGG	.	35	4	29	0	.	1	1	0	0	0
NRIP1	8204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	16337670	16337670	+	Silent	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NRIP1-186	NM_003489	exon4	c.T2844C	p.D948D	GGACAAATCTCGC	.	157	44	150	0	.	11	4	7	0	0
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	22658662	22658662	+	Silent	SNP	A	A	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NCAM2-94	NM_004540	exon4	c.A411T	p.R137R	TTGCCGAGTTAGC	.	55	15	64	0	.	0	0	0	0	0
SON	6651	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	21	34932382	34932382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	SON-97	NM_032195	exon7	c.A6857G	p.N2286S	GGTACAACTATTT	.	180	55	200	0	.	14	12	2	0	0
CECR2	27443	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18021911	18021911	+	Silent	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	CECR2-70	.	.	.	.	AATGTGCGGGGGG	.	27	8	20	0	.	1	1	0	0	0
LOC96610	0	ucsc.edu	37	22	22677057	22677057	+	RNA	SNP	G	G	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	.	.	.	.	.	CCCTCAGTGTCTG	.	127	1	135	0	.	6	5	1	0	0
RHBDD3	25807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29656765	29656765	+	Silent	SNP	C	C	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	RHBDD3-91	NM_012265	exon5	c.G621T	p.G207G	CCAGCACCCCGCC	.	29	9	23	0	.	8	6	2	0	0
MTMR14	64419	broad.mit.edu;bcgsc.ca	37	3	9691346	9691346	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	MTMR14-91	NM_022485	exon1	c.C79G	p.L27V	CAGGAGCTGGGGC	.	16	4	19	0	.	1	1	0	0	0
DPPA2	151871	broad.mit.edu	37	3	109023471	109023471	+	Silent	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DPPA2-93	NM_138815	exon7	c.A705G	p.T235T	ACCCTTTGTGTCT	.	119	4	109	0	.	2	2	0	0	0
POU4F2	5458	hgsc.bcm.edu	37	4	147561258	147561258	+	Silent	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	POU4F2-135	NM_004575	exon2	c.T528C	p.H176H	CCACCATCACCAC	.	33	2	20	0	.	1137	16	104	1016	1
DDX60	55601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	169172121	169172121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DDX60-25	NM_017631	exon28	c.G3842A	p.R1281K	CCTTTTCTAAAGA	.	64	16	53	0	.	8	6	2	0	0
PALLD	23022	broad.mit.edu	37	4	169433375	169433375	+	Silent	SNP	G	G	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PALLD-94	NM_001166108	exon2	c.G720A	p.R240R	GGCCAGGCATTGC	.	115	5	116	0	.	0	0	0	0	0
WWC2	80014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	184166688	184166688	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	WWC2-93	NM_024949	exon6	c.A722C	p.D241A	AACAAGATCTGAT	.	50	14	54	0	.	0	0	0	0	0
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	32074625	32074625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PDZD2-563	NM_178140	exon17	c.G3413T	p.S1138I	AGCCCAGTGGCTC	.	49	19	64	0	.	0	0	0	0	0
SEPP1	6414	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	42807146	42807146	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	SEPP1-68	.	.	.	.	GATGATTAACAAC	.	66	13	59	0	.	104	89	15	0	0
FCHO2	115548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	72383545	72383545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	FCHO2-23	NM_138782	exon25	c.A2375G	p.Y792C	CTGGCTATAGGCT	.	229	61	213	0	.	6	3	3	0	0
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82785943	82785943	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	VCAN-238	NM_004385	exon3	c.A97T	p.R33W	CCGGTGAGGGGCT	.	115	32	102	0	.	10	8	2	0	0
VARS2	57176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30888201	30888201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	VARS2-26	NM_001167734	exon14	c.T1475C	p.L492P	TGGTACTGCCCAT	.	61	19	48	0	.	0	0	0	0	0
ZNF76	7629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35260658	35260658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	ZNF76-90	NM_003427	exon11	c.C1166T	p.A389V	TCCCAGCCGCCTC	.	148	45	129	0	.	0	0	0	0	0
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	38709565	38709565	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DNAH8-615	NM_001206927	exon8	c.A1195G	p.M399V	AAACGCATGTCAG	.	77	27	83	0	.	0	0	0	0	0
RUNX2	860	hgsc.bcm.edu;broad.mit.edu	37	6	45390466	45390466	+	Silent	SNP	A	A	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	RUNX2-417	NM_001024630	exon3	c.A195G	p.Q65Q	GCAGCAACAGCAG	.	32	3	40	0	.	8081	73	8001	6	1
BAI3	577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	69943243	69943243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	BAI3-1148	NM_001704	exon18	c.C2542T	p.H848Y	GCATCCCATACGA	.	215	68	266	0	.	0	0	0	0	0
RFX6	222546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	117245902	117245902	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	RFX6-93	NM_173560	exon15	c.T1626A	p.N542K	TAATAATGACAAA	.	92	20	97	0	.	0	0	0	0	0
AEBP1	165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44152208	44152208	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	AEBP1-90	NM_001129	exon18	c.G2269C	p.V757L	CCCTTCGTGCTGG	.	151	40	117	0	.	145	101	44	0	0
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44714122	44714122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	OGDH-228	NM_002541	exon7	c.G901A	p.G301S	GAGAATGGCGTGG	.	126	55	104	0	.	29	21	8	0	0
VSTM2A	222008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	54617692	54617692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	.	NM_182546	exon4	c.C463T	p.R155C	CATGCCCGCAGAA	.	32	13	30	0	.	11	2	9	0	0
FEZF1	389549	broad.mit.edu	37	7	121944146	121944146	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	FEZF1-91	NM_001160264	exon1	c.A346C	p.S116R	TGCAGCTGAATGC	.	13	3	9	0	.	0	0	0	0	0
C7orf55-LUC7L2	100996928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	139107032	139107032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	.	NM_001244584	exon11	c.T1323A	p.N441K	TGCTAATGGCAGA	.	200	102	170	0	.	65	30	35	0	0
PRSS55	203074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	10390473	10390473	+	Nonsense_Mutation	SNP	G	G	A	rs150767306	alternate_allele	TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PRSS55-91	NM_001197020	exon4	c.G656A	p.W219X	TGGACTGGGAGGA	.	95	34	109	0	G|1.000;T|0.000	0	0	0	0	0
NUGGC	389643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	27888815	27888815	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	.	NM_001010906	exon15	c.G1853C	p.G618A	CTTATCCCAATTT	.	192	49	202	0	.	0	0	0	0	0
NR5A1	2516	hgsc.bcm.edu	37	9	127262609	127262609	+	Silent	SNP	C	C	A	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NR5A1-186	NM_004959	exon4	c.G630T	p.P210P	GCCGTACGGCAGC	.	9	5	6	2	.	0	0	0	0	0
RPS6KA3	6197	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	20194424	20194424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	RPS6KA3-1504	NM_004586	exon13	c.G1046A	p.G349D	GGCCTGCCCGTTG	.	47	5	39	0	.	7	7	0	0	0
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135314169	135314169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	MAP7D3-110	NM_024597	exon8	c.A947G	p.N316S	CTTGTGTTGCAGA	.	192	23	209	0	.	12	12	0	0	0
DDX10	1662	broad.mit.edu	37	11	108788635	108788637	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DDX10-1145	NM_004398	exon17	c.2340_2342del	p.780_781del	TTGGAGTGATGAT	.	79	6	79	0	.	0	0	0	0	0
CD3EAP	10849	broad.mit.edu	37	19	45911859	45911861	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	CD3EAP-156	NM_012099	exon3	c.633_635del	p.211_212del	TGTGCGGAAGAAG	.	149	8	132	0	.	0	0	0	0	0
CHD6	84181	broad.mit.edu	37	20	40033403	40033405	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	CHD6-238	NM_032221	exon37	c.7976_7978del	p.2659_2660del	CCTTTGTCTTCTT	.	164	10	146	0	.	0	0	0	0	0
ELF3	1999	broad.mit.edu	37	1	201980419	201980420	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	ELF3-226	NM_004433	exon2	c.155_156insG	p.E52fs	CATTGGAGGGTAC	.	138	11	132	0	.	0	0	0	0	0
UBR2	23304	broad.mit.edu	37	6	42610219	42610220	+	Frame_Shift_Ins	INS	-	-	GTAAT	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	UBR2-94	NM_015255	exon18	c.2097_2098insGTAAT	p.Q699fs	GCTTCAGGTAATG	.	37	7	25	0	.	0	0	0	0	0