Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16258648	16258648	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	SPEN-298	NM_015001	exon11	c.T5913C	p.P1971P	GGAACCTGCAGAA	.	76	24	67	1	.	9	6	3	0	0
MYSM1	114803	broad.mit.edu	37	1	59125680	59125680	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	MYSM1-501	NM_001085487	exon20	c.T2476C	p.L826L	TTAACAATTCCTT	.	85	4	82	0	.	4	4	0	0	0
CD84	8832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160523192	160523192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	CD84-93	NM_001184881	exon4	c.T736C	p.F246L	AACGGAACAAAAA	.	66	26	49	1	.	2	2	0	0	0
PRKG1	5592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	53227571	53227571	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	PRKG1-523	NM_006258	exon3	c.C567G	p.N189K	TTACAACTGTACC	.	119	40	94	0	.	2	2	0	0	0
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	73406335	73406335	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	CDH23-563	NM_052836	exon13	c.C1410T	p.Y470Y	CCTGTACGAGAAC	.	219	64	235	0	.	0	0	0	0	0
DGKZ	8525	ucsc.edu;bcgsc.ca	37	11	46401423	46401423	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	DGKZ-676	NM_001105540	exon32	c.G3280T	p.E1094X	GACACCGAGCTGG	.	13	4	28	0	.	71	51	20	0	0
SSSCA1	10534	ucsc.edu	37	11	65338205	65338205	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	SSSCA1-92	NM_006396	exon2	c.C150T	p.G50G	GCTGGGCGAGACG	.	36	4	43	0	.	98	98	0	0	0
PC	5091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66636376	66636376	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	PC-228	NM_000920	exon9	c.C963A	p.Y321X	GATGAAGTAGTGC	.	123	38	94	0	.	8	7	1	0	0
ALDH3B2	222	ucsc.edu	37	11	67432821	67432821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ALDH3B2-226	NM_001031615	exon7	c.G641A	p.R214Q	AATGCCCGCAGCC	.	110	1	144	0	.	97	46	51	0	0
GNPTAB	79158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	102147162	102147162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	GNPTAB-92	NM_024312	exon19	c.A3590G	p.E1197G	TGCAGCTCATGCA	.	77	28	68	0	.	0	0	0	0	0
RASAL1	8437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113565934	113565934	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	RASAL1-229	NM_004658	exon4	c.A172T	p.T58S	GCACCGTGTACTC	.	349	118	327	0	.	36	21	15	0	0
PLBD2	196463	hgsc.bcm.edu	37	12	113826272	113826272	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	PLBD2-68	NM_173542	exon12	c.C1611G	p.S537R	GACCAGCATGTCA	.	16	2	10	0	.	0	0	0	0	0
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	23906994	23906994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	SACS-298	NM_014363	exon10	c.A11021G	p.N3674S	GTTCCATTTACCT	.	102	43	82	0	.	2	2	0	0	0
KBTBD6	89890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	41706340	41706340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	KBTBD6-92	NM_152903	exon1	c.G308A	p.G103D	TACATGCCACCTG	.	50	18	54	1	.	16	11	5	0	0
FSCB	84075	hgsc.bcm.edu	37	14	44974805	44974805	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	FSCB-587	NM_032135	exon1	c.T1386C	p.P462P	CTCTTTAGGTAAT	.	57	3	49	0	.	0	0	0	0	0
ACTC1	70	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	35083348	35083348	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ACTC1-92	NM_005159	exon6	c.C957A	p.I319I	AGCAGTGATTTCC	.	319	113	311	1	.	1	1	0	0	0
IQGAP1	8826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91009552	91009552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	IQGAP1-950	NM_003870	exon17	c.G1919T	p.G640V	ATGTTGGCAAAAC	.	123	33	147	0	.	44	22	22	0	0
RCCD1	91433	hgsc.bcm.edu	37	15	91500668	91500668	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	RCCD1-90	NM_001017919	exon3	c.G492A	p.E164E	GCTGGAGCTGGGC	.	8	4	1	0	.	15	5	10	0	0
PKD1	5310	ucsc.edu	37	16	2165459	2165459	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	PKD1-91	NM_000296	exon10	c.C2017G	p.P673A	GCCCTGGCCCTGA	.	31	3	31	5	.	14	14	0	0	0
NLRC5	84166	hgsc.bcm.edu	37	16	57099179	57099179	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	NLRC5-159	NM_032206	exon32	c.G4210C	p.A1404P	GTCTGCGCCCAGG	.	54	3	55	0	.	9	9	0	0	0
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	58620607	58620607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	CNOT1-95	NM_206999	exon7	c.A479G	p.Y160C	TCAATGTAAGAAC	.	385	106	397	0	.	20	19	1	0	0
BCMO1	53630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81298288	81298288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	BCMO1-90	NM_017429	exon5	c.A515G	p.H172R	CGTCACATCCCCA	.	102	31	115	0	.	7	5	2	0	0
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	60040331	60040331	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	MED13-136	NM_005121	exon21	c.A4846C	p.T1616P	CCATCGTGCTAAA	.	131	34	91	0	.	0	0	0	0	0
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73746316	73746316	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ITGB4-227	NM_001005731	exon28	c.G3441A	p.W1147X	CAACTGGCTGCCC	.	90	46	58	0	.	24	22	2	0	0
NPC1	4864	hgsc.bcm.edu	37	18	21119433	21119433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	NPC1-92	NM_000271	exon19	c.A2797G	p.T933A	TTCGGGTACTAGA	.	30	2	24	0	.	1	1	0	0	0
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	50683788	50683788	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	DCC-225	NM_005215	exon8	c.A1324T	p.S442C	GTTTCCAGCCGAT	.	239	77	215	1	.	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1061844	1061844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ABCA7-98	NM_019112	exon41	c.G5527A	p.D1843N	ACGGGGGACACAT	.	60	16	72	0	.	23	13	10	0	0
SHD	56961	broad.mit.edu	37	19	4284873	4284873	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	SHD-90	NM_020209	exon4	c.G688C	p.D230H	CGTGTGGACCCAG	.	59	3	85	1	.	0	0	0	0	0
SH2D3A	10045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6760836	6760836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	SH2D3A-290	NM_005490	exon3	c.T232C	p.F78L	GTTGAAAGAGGGC	.	99	32	95	0	.	8	4	4	0	0
MAP2K7	5609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7976338	7976338	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	MAP2K7-1450	NM_145185	exon9	c.A954G	p.G318G	AACAGGACAGTTT	.	40	12	76	0	.	38	22	16	0	0
ZNF799	90576	ucsc.edu	37	19	12502924	12502924	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ZNF799-74	NM_001080821	exon4	c.T288A	p.T96T	AGGAAGAGTGTTC	.	104	4	90	1	.	13	9	4	0	0
SLC27A1	376497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17615314	17615314	+	Missense_Mutation	SNP	C	C	T	rs149575978		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	SLC27A1-226	NM_198580	exon12	c.C1834T	p.R612C	GACCCACGCCAGA	.	116	32	108	0	C|1.000;T|0.000	72	38	34	0	0
DMWD	1762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46294234	46294234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	DMWD-90	NM_004943	exon2	c.G553T	p.G185C	AGAAGCCCACCAG	.	128	41	149	1	.	71	39	32	0	0
ZNF613	79898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52448014	52448014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ZNF613-91	NM_001031721	exon6	c.G878T	p.C293F	GTGATTGTGGAAA	.	107	30	91	0	.	5	2	3	0	0
ZNF845	91664	broad.mit.edu	37	19	53855052	53855052	+	Missense_Mutation	SNP	A	A	G	rs62115343		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	.	NM_138374	exon4	c.A1124G	p.K375R	ATAGGAAAATTCA	.	59	3	43	0	.	42	13	25	0	4
KCNIP3	30818	hgsc.bcm.edu	37	2	96012772	96012772	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	KCNIP3-154	NM_001034914	exon1	c.G5C	p.G2A	CCATGGGCATCCA	.	25	3	25	0	.	42	42	0	0	0
ADRA2B	151	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	96781259	96781259	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ADRA2B-229	NM_000682	exon1	c.G630A	p.K210K	CCCCCCCTTGGCC	.	36	6	47	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu	37	2	179611917	179611917	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	TTN-636	NM_133379	exon46	c.A15210G	p.L5070L	TCTCTCTAGAGTC	.	133	8	123	1	.	0	0	0	0	0
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197767380	197767380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	PGAP1-93	NM_024989	exon5	c.G736A	p.D246N	GGTAATCCCGGAA	.	90	32	98	0	.	1	0	1	0	0
LRRFIP1	9208	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	238636568	238636568	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	LRRFIP1-153	NM_001137550	exon8	c.G434C	p.R145T	ATAGAAGATCTGG	.	189	66	194	0	.	0	0	0	0	0
LAMA5	3911	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	60927089	60927089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	LAMA5-93	NM_005560	exon5	c.C734A	p.S245Y	GAGTAGGAGAAAT	.	23	9	26	0	.	10	9	1	0	0
SGSM3	27352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40803806	40803806	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	SGSM3-494	NM_015705	exon14	c.A1538C	p.K513T	CTCAGAAGGACGA	.	108	31	83	0	.	4	3	1	0	0
NKIRAS1	28512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	23942484	23942484	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	NKIRAS1-659	NM_020345	exon4	c.C151T	p.R51X	CTCCTCGGTCTGT	.	193	56	166	1	.	16	9	7	0	0
VPRBP	9730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	51457622	51457622	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	VPRBP-92	NM_014703	exon14	c.G2643C	p.R881R	GGGGGGCCGTGGC	.	60	27	78	0	.	28	15	13	0	0
GMPS	8833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	155654202	155654202	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	GMPS-229	NM_003875	exon15	c.A1883T	p.Q628L	AAAAGCAGCCTTC	.	165	49	169	0	.	49	28	21	0	0
PRKCI	5584	hgsc.bcm.edu;broad.mit.edu	37	3	169940480	169940480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	PRKCI-1378	NM_002740	exon1	c.G23A	p.S8N	ACAGCAGCACCAT	.	19	5	22	0	.	2	2	0	0	0
MAP3K13	9175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	185146747	185146747	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	MAP3K13-548	NM_004721	exon2	c.C378T	p.G126G	CAGTGGCAGTGGT	.	94	27	80	0	.	6	3	3	0	0
DOK7	285489	broad.mit.edu	37	4	3478168	3478168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	DOK7-91	NM_001164673	exon4	c.T431C	p.I144T	GGGACATCCCCCC	.	105	3	113	1	.	2	2	0	0	0
WFS1	7466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	6303094	6303094	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	WFS1-91	NM_001145853	exon8	c.C1572T	p.F524F	GAATTTCAAGGGC	.	196	79	223	0	.	31	20	11	0	0
ADAMTS3	9508	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	73280662	73280662	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ADAMTS3-651	NM_014243	exon4	c.A531T	p.E177D	ATACTCTTCATTA	.	144	15	139	0	.	1	1	0	0	0
MAML3	55534	hgsc.bcm.edu;broad.mit.edu	37	4	140811108	140811108	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	MAML3-455	NM_018717	exon2	c.G1482A	p.Q494Q	CTGCTGCTGCTGC	.	43	4	49	0	.	901	889	11	0	1
LRBA	987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	151935707	151935707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	LRBA-157	NM_006726	exon2	c.G88T	p.G30W	CACCCCCTTCAGT	.	60	23	47	0	.	10	6	4	0	0
PLEKHG4B	153478	hgsc.bcm.edu	37	5	163211	163211	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	PLEKHG4B-228	NM_052909	exon11	c.A1956G	p.P652P	GCAACCACTGTCC	.	12	6	5	1	.	0	0	0	0	0
SLC6A18	348932	broad.mit.edu	37	5	1245991	1245991	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	SLC6A18-91	NM_182632	exon12	c.T1685G	p.L562R	AGAAGCTCTACCC	.	24	4	33	0	.	0	0	0	0	0
XRCC4	7518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82406899	82406899	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	XRCC4-229	NM_003401	exon3	c.G192T	p.G64G	AAAAGGGAAATAT	.	53	22	65	0	.	5	5	0	0	0
ERAP1	51752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	96139212	96139212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ERAP1-70	NM_001198541	exon2	c.C418T	p.L140F	CGACAAGGAGGGG	.	101	40	107	0	.	27	16	11	0	0
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	129030431	129030431	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ADAMTS19-295	NM_133638	exon19	c.T2819G	p.V940G	CAACAGTGTCCTG	.	69	22	53	2	.	0	0	0	0	0
LY6G6F	259215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31677862	31677862	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	LY6G6F-567	NM_001003693	exon4	c.A706T	p.I236F	CCTTGGATTCTGA	.	54	17	71	0	.	0	0	0	0	0
GSTA2	2939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	52617715	52617715	+	Missense_Mutation	SNP	T	T	A	rs200252041	alternate_allele	TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	GSTA2-91	NM_000846	exon5	c.A351T	p.Q117H	GGCATCTTGTTCC	.	366	132	329	0	T|1.000;C|0.000	0	0	0	0	0
CPVL	54504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	29135764	29135764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	CPVL-92	NM_019029	exon4	c.C358A	p.L120I	CAAAGAGTCCAAA	.	218	71	216	0	.	380	250	129	1	0
POMZP3	22932	hgsc.bcm.edu	37	7	76255360	76255360	+	Missense_Mutation	SNP	G	G	C	rs62476652	bycluster	TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	POMZP3-90	NM_152992	exon2	c.C22G	p.L8V	TCCTCAGAGTCAC	.	43	5	32	2	.	88	9	79	0	0
FZD1	8321	hgsc.bcm.edu	37	7	90894862	90894862	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	FZD1-658	NM_003505	exon1	c.G667C	p.A223P	CACGGCGCCGGCG	.	43	3	37	0	.	44	44	0	0	0
ASH2L	9070	broad.mit.edu;bcgsc.ca	37	8	37963231	37963231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ASH2L-131	NM_004674	exon1	c.C163T	p.P55S	GTTGAGCCCAGTT	.	48	11	31	0	.	27	14	13	0	0
EIF3E	3646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	109215296	109215296	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	EIF3E-188	NM_001568	exon12	c.T1215A	p.I405I	CTTTTCAATCACT	.	112	41	88	0	.	444	257	187	0	0
ZHX2	22882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	123965471	123965471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ZHX2-227	NM_014943	exon3	c.A1721G	p.D574G	AGATCGACTCCTG	.	94	35	78	1	.	128	67	61	0	0
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144811207	144811207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	FAM83H-92	NM_198488	exon4	c.T667C	p.S223P	TGAAGGACTTCCC	.	139	43	154	2	.	35	16	19	0	0
CNTNAP3	79937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	39140600	39140600	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	CNTNAP3-91	NM_033655	exon12	c.C1792T	p.R598X	TCCCTCGGTGCTT	.	98	32	107	0	.	1	1	0	0	0
SPATA31D1	389763	broad.mit.edu;bcgsc.ca	37	9	84608476	84608476	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	.	NM_001001670	exon4	c.G3091C	p.D1031H	ACTACAGATTTTC	.	362	9	301	1	.	0	0	0	0	0
INVS	27130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	103059359	103059359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	INVS-92	NM_014425	exon15	c.C2947A	p.P983T	AAGGCCCCCAAGA	.	53	31	50	0	.	36	2	34	0	0
TFE3	7030	ucsc.edu	37	X	48895570	48895570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	TFE3-658	NM_006521	exon5	c.C850G	p.P284A	CTCCGGGCAGATA	.	20	1	23	0	.	71	51	20	0	0
TEX11	56159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	69898664	69898664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	TEX11-178	NM_001003811	exon16	c.G1277A	p.S426N	AAACTACTGGCAG	.	48	17	56	0	.	0	0	0	0	0
NXF5	55998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	101096014	101096014	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	NXF5-204	NM_032946	exon8	c.A454T	p.K152X	TGATCTTCAGGGT	.	428	115	477	0	.	0	0	0	0	0
TBX3	6926	broad.mit.edu	37	12	115112487	115112488	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	TBX3-93	NM_016569	exon7	c.1252_1253del	p.418_418del	TCAGCAGCGAAAA	.	21	8	21	0	.	0	0	0	0	0
CHRFAM7A	89832	hgsc.bcm.edu;broad.mit.edu	37	15	30665308	30665308	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	CHRFAM7A-45	NM_139320	exon6	c.201delT	p.F67fs	.	.	732	118	779	0	.	0	0	0	0	0
CBR1	873	broad.mit.edu;bcgsc.ca	37	21	37442617	37442626	+	Frame_Shift_Del	DEL	GAGCATCCGC	GAGCATCCGC	-	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	GAGCATCCGC	GAGCATCCGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	CBR1-90	NM_001757	exon1	c.204_213del	p.68_71del	TCTGCAGAGCATC	.	47	9	55	0	.	0	0	0	0	0
KCNJ15	3772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	39672237	39672239	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	KCNJ15-157	NM_002243	exon4	c.1054_1056del	p.352_352del	.	.	66	18	74	0	.	0	0	0	0	0
TRIM2	23321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	154237027	154237027	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	TRIM2-650	NM_015271	exon8	c.1658delG	p.R553fs	.	.	136	52	162	0	.	0	0	0	0	0
TMEM30A	55754	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	75975041	75975042	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	TMEM30A-90	NM_018247	exon3	c.358_359del	p.120_120del	.	.	35	14	39	0	.	0	0	0	0	0
XIST	7503	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	73071036	73071061	+	RNA	DEL	AAACCCGCCATCTTTAACAATGCGGC	AAACCCGCCATCTTTAACAATGCGGC	-	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	AAACCCGCCATCTTTAACAATGCGGC	AAACCCGCCATCTTTAACAATGCGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	.	.	.	.	.	.	.	212	44	227	0	.	0	0	0	0	0
EP400	57634	broad.mit.edu	37	12	132445250	132445251	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	EP400-520	NM_015409	exon2	c.86_87insG	p.P29fs	AGCAGCCGGCCCA	.	14	3	15	0	.	0	0	0	0	0
XIST	7503	hgsc.bcm.edu	37	X	73071061	73071062	+	RNA	INS	-	-	A	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	.	.	.	.	.	.	.	170	37	187	0	.	0	0	0	0	0