Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
KIAA1522	57648	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	33236795	33236795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	KIAA1522-90	NM_020888	exon6	c.C2015A	p.P672Q	TCTCCCCACCTCC	.	141	46	134	0	.	13	3	10	0	0
SLC5A9	200010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	48708165	48708165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	SLC5A9-93	NM_001135181	exon14	c.C1789T	p.L597F	TGCCCCCTCTCTG	.	162	9	129	0	.	0	0	0	0	0
CTH	1491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	70895506	70895506	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	CTH-91	NM_001902	exon6	c.T618C	p.S206S	TATTTCTATGTAT	.	79	26	76	0	.	2	1	1	0	0
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94528186	94528186	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ABCA4-162	NM_000350	exon13	c.T1884A	p.A628A	AACTGGAGCCTCC	.	59	16	63	0	.	0	0	0	0	0
SEMA6C	10500	hgsc.bcm.edu	37	1	151112138	151112138	+	Silent	SNP	T	T	C	rs200312578	alternate_allele	TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	SEMA6C-92	NM_001178061	exon5	c.A273G	p.E91E	CTCCCCTTCTTCT	.	62	4	50	0	T|0.999;G|0.001	0	0	0	0	0
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216373415	216373415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	USH2A-115	NM_007123	exon17	c.C3365T	p.S1122F	TAATAGGAATATT	.	90	31	88	1	.	0	0	0	0	0
CDHR1	92211	broad.mit.edu	37	10	85968003	85968003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	CDHR1-91	NM_001171971	exon11	c.T1037C	p.L346P	TGGACCTCAACAA	.	84	3	70	0	.	2	2	0	0	0
OR4C15	81309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55322355	55322355	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	OR4C15-70	NM_001001920	exon1	c.G573C	p.R191S	GAACAGGAGGCTC	.	175	53	138	0	.	0	0	0	0	0
TPI1	7167	broad.mit.edu;bcgsc.ca	37	12	6976722	6976722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	TPI1-226	NM_001159287	exon1	c.T103C	p.S35P	CTCGGCTCCAGCG	.	34	16	28	1	.	63	36	27	0	0
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	59283874	59283874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	LRIG3-229	NM_153377	exon5	c.A563T	p.D188V	AAATTGTCAAAAT	.	257	80	253	0	.	0	0	0	0	0
SLC7A1	6541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	30096467	30096467	+	Silent	SNP	C	C	T	rs150705194		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	SLC7A1-90	NM_003045	exon8	c.G1176A	p.S392S	GGCACCCGAGGCT	.	254	65	249	0	C|1.000;T|0.000	0	0	0	0	0
GPC6	10082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	94482740	94482740	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	GPC6-90	NM_005708	exon3	c.C653G	p.A218G	TTGCTGCCAGGAC	.	53	18	85	0	.	7	0	7	0	0
RAP2A	5911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	98086836	98086836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	RAP2A-1271	NM_021033	exon1	c.G112A	p.D38N	ATCGAGGACTTCT	.	174	57	149	0	.	1	1	0	0	0
GPR18	2841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99907879	99907879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	GPR18-90	NM_001098200	exon2	c.C248T	p.A83V	TCTTTTGCATAAT	.	69	18	79	0	.	0	0	0	0	0
OR4K2	390431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20345257	20345257	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	OR4K2-72	NM_001005501	exon1	c.C831A	p.I277I	TACCATCTTTACT	.	151	32	188	1	.	0	0	0	0	0
SNX6	58533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35062276	35062276	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	SNX6-226	NM_152233	exon8	c.T729A	p.S243S	TCTATCAGATTTA	.	61	18	96	0	.	20	9	11	0	0
CLEC14A	161198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	38724316	38724316	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	CLEC14A-94	NM_175060	exon1	c.G912A	p.R304R	CGGGCGCCTGGTG	.	139	50	135	0	.	0	0	0	0	0
PRPF39	55015	hgsc.bcm.edu	37	14	45565377	45565377	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PRPF39-70	NM_017922	exon3	c.G396C	p.W132C	TTACTGGAAAAAG	.	19	2	19	0	.	1	1	0	0	0
FERMT2	10979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	53386065	53386065	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	FERMT2-68	NM_001135000	exon3	c.A167T	p.K56I	CAATCTTTTTTTA	.	99	27	107	0	.	0	0	0	0	0
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102466716	102466716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	DYNC1H1-98	NM_001376	exon18	c.G4054A	p.V1352I	CCCTGGGTTTCAG	.	87	28	85	0	.	6	5	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102483738	102483738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	DYNC1H1-98	NM_001376	exon40	c.T8074C	p.F2692L	GGAGGCTTTTACC	.	150	4	163	1	.	8	8	0	0	0
ATP10A	57194	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	25924510	25924510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ATP10A-139	NM_024490	exon21	c.C4478T	p.A1493V	GAAGATGCTCCTA	.	100	25	74	0	.	0	0	0	0	0
SYNM	23336	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	99670274	99670274	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	SYNM-26	.	.	.	.	AGGAGAAGAGCGT	.	52	12	50	0	.	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2052644	2052644	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ZNF598-432	NM_178167	exon6	c.G555A	p.G185G	CGGGTGCCCACGG	.	50	10	40	0	.	5	4	1	0	0
CLUAP1	23059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3554721	3554721	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	CLUAP1-137	NM_015041	exon2	c.T24C	p.N8N	GACAGATTTCACA	.	105	21	60	0	.	0	0	0	0	0
RRN3	54700	ucsc.edu	37	16	15188060	15188060	+	Missense_Mutation	SNP	G	G	A	rs201504364		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	RRN3-91	NM_018427	exon1	c.C31T	p.P11S	CTCCCGGCAAACG	.	35	8	12	0	G|0.997;A|0.003	6	6	0	0	0
RRN3	54700	ucsc.edu	37	16	15188066	15188066	+	Missense_Mutation	SNP	G	G	A	rs200006712		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	RRN3-91	NM_018427	exon1	c.C25T	p.R9C	GCAAACGCGTGTG	.	37	8	12	0	G|0.997;A|0.003	5	5	0	0	0
SPG7	6687	broad.mit.edu	37	16	89613084	89613084	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	SPG7-226	NM_003119	exon11	c.G1468T	p.E490X	ATTTTTGAGCAGC	.	173	33	146	16	.	16	16	0	0	0
TIAF1	9220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27400954	27400954	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	TIAF1-68	NM_004740	exon1	c.G264C	p.R88S	ATCAGCCCTGAAC	.	251	129	206	0	.	23	6	17	0	0
TMEM101	84336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42089524	42089524	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	TMEM101-91	NM_032376	exon4	c.G546A	p.L182L	GAAGAACAGCTGG	.	122	27	97	0	.	27	20	7	0	0
TOB1	10140	broad.mit.edu	37	17	48941062	48941062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	TOB1-226	NM_005749	exon2	c.A317G	p.K106R	GGTCCCTTTTCAC	.	150	3	135	0	.	46	46	0	0	0
BZRAP1	9256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56386306	56386306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	BZRAP1-229	NM_004758	exon22	c.C4327A	p.L1443M	GGCCCAGTCGTCC	.	149	36	89	0	.	1	0	1	0	0
KCNH6	81033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61623123	61623123	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	KCNH6-91	NM_030779	exon14	c.C2845T	p.L949L	TCACCTCTACATC	.	169	33	126	0	.	0	0	0	0	0
EVPL	2125	broad.mit.edu;bcgsc.ca	37	17	74004559	74004559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	EVPL-93	NM_001988	exon22	c.G4727A	p.R1576Q	TCCTCCCGGGACC	.	29	9	22	0	.	6	5	1	0	0
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	9257291	9257291	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ANKRD12-92	NM_015208	exon9	c.T4026C	p.T1342T	AGATACTAGTCCT	.	120	43	132	0	.	3	1	2	0	0
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	31263418	31263418	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ASXL3-49	NM_030632	exon8	c.A765G	p.G255G	CCCAGGATCTATT	.	54	14	53	0	.	0	0	0	0	0
ELAC1	55520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	48513160	48513160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ELAC1-90	NM_018696	exon4	c.G797C	p.C266S	AACTGTGCTTTGA	.	48	14	55	0	.	5	2	3	0	0
ALPK2	115701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	56196435	56196435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ALPK2-765	NM_052947	exon6	c.T5389C	p.F1797L	CAGGGAACATCTC	.	104	29	123	1	.	3	1	2	0	0
PLIN4	729359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4512468	4512468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PLIN4-68	NM_001080400	exon3	c.G1462A	p.V488M	TGGACACAGCATC	.	216	58	210	1	.	0	0	0	0	0
ALKBH7	84266	hgsc.bcm.edu	37	19	6372879	6372879	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ALKBH7-90	NM_032306	exon1	c.C48G	p.S16R	GCCCAGCTGGGTG	.	7	4	5	1	.	5	2	3	0	0
ZNF763	284390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12089881	12089881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ZNF763-90	NM_001012753	exon4	c.T1151C	p.F384S	ATAAGTTTTCAAA	.	143	55	121	0	.	0	0	0	0	0
ZSWIM4	65249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13915960	13915960	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ZSWIM4-90	NM_023072	exon3	c.A710G	p.N237S	TGGTGAATGGTAA	.	64	17	73	0	.	0	0	0	0	0
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17946018	17946018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	JAK3-2418	NM_000215	exon15	c.A1921G	p.K641E	GGCCTTTGTCCTC	.	50	13	52	0	.	0	0	0	0	0
ZNF626	199777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	20808028	20808028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ZNF626-515	NM_001076675	exon4	c.C655T	p.H219Y	TCTTATGTCTAGT	.	48	11	64	0	.	1	1	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599455	56599455	+	Missense_Mutation	SNP	C	C	G	rs202243737		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ZNF787-69	NM_001002836	exon3	c.G1086C	p.E362D	GTCGTCCTCCTCC	.	26	14	11	0	C|0.996;G|0.004	0	0	0	0	0
HTR2B	3357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231988374	231988374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	HTR2B-90	NM_000867	exon2	c.G105T	p.Q35H	TTCTGTCTGTAAT	.	144	48	132	0	.	0	0	0	0	0
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238283616	238283616	+	Missense_Mutation	SNP	C	C	T	rs78427077		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	COL6A3-526	NM_004369	exon8	c.G3118A	p.V1040I	TCCTGACGCCCTC	.	76	24	87	0	C|1.000;T|0.000	1	1	0	0	0
GDF5	8200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34025518	34025518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	GDF5-226	NM_000557	exon1	c.G191A	p.S64N	CCATAGCTGTGAC	.	22	7	18	0	.	0	0	0	0	0
SALL4	57167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	50405586	50405586	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	SALL4-92	NM_020436	exon3	c.C2556T	p.S852S	CCCTGGGGACAAT	.	59	19	73	0	.	0	0	0	0	0
KRTAP13-1	140258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31768620	31768620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	KRTAP13-1-91	NM_181599	exon1	c.G216T	p.E72D	TGTGGAGTCCAGC	.	83	26	89	0	.	0	0	0	0	0
NDUFV3	4731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	44317078	44317078	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	NDUFV3-92	NM_001001503	exon2	c.T90C	p.S30S	TGCTTCTACGGTT	.	94	27	121	0	.	14	7	7	0	0
PPM1F	9647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	22287929	22287929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PPM1F-292	NM_014634	exon5	c.T581C	p.F194S	ACAGCAAAGTAGG	.	57	25	47	0	.	1	0	1	0	0
SFI1	9814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	31924806	31924806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	SFI1-90	NM_001007467	exon3	c.C223T	p.H75Y	GGCACACATACTT	.	130	41	110	0	.	2	0	2	0	0
APOL1	8542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36661665	36661665	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	APOL1-221	NM_145343	exon7	c.C831T	p.N277N	TGAGAACATATCC	.	60	18	66	0	.	126	64	62	0	0
TNRC6B	23112	hgsc.bcm.edu;broad.mit.edu	37	22	40669533	40669533	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	TNRC6B-22	NM_001162501	exon7	c.A3070G	p.T1024A	AACACCACTGGCT	.	13	5	9	0	.	1	0	1	0	0
CRTAP	10491	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	33156008	33156008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	CRTAP-90	NM_006371	exon1	c.C439T	p.P147S	CGCGAGCCCTACA	.	42	14	20	0	.	53	18	35	0	0
PTH1R	5745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46939563	46939563	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PTH1R-522	NM_000316	exon7	c.425-1G>T	.	CCTGCAGGCCATG	.	183	40	125	1	.	3	0	3	0	0
ATP2C1	27032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130686204	130686204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ATP2C1-91	NM_001199181	exon15	c.A1351G	p.R451G	GTAATTAGAAACA	.	132	33	96	1	.	36	30	6	0	0
DZIP1L	199221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	137805834	137805834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	DZIP1L-92	NM_001170538	exon8	c.T1031C	p.L344P	TCATGCAGTTCCT	.	133	31	102	0	.	0	0	0	0	0
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184041746	184041746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	EIF4G1-344	NM_001194946	exon17	c.T2474C	p.M825T	CCAACATGTGCCG	.	124	33	104	0	.	40	26	14	0	0
HGFAC	3083	ucsc.edu	37	4	3444828	3444828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	HGFAC-514	NM_001528	exon3	c.G350A	p.R117H	GGGGCCGCATGCT	.	39	4	27	0	.	0	0	0	0	0
LAP3	51056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	17590497	17590497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	LAP3-90	NM_015907	exon7	c.G760A	p.G254R	GCCAAAGGATCTG	.	134	50	121	0	.	27	11	16	0	0
TMEM156	80008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	38990526	38990526	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	TMEM156-91	NM_024943	exon4	c.C684A	p.I228I	GAGGATGATCAAA	.	121	31	160	1	.	0	0	0	0	0
PRKG2	5593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	82074809	82074809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PRKG2-524	NM_006259	exon6	c.G979T	p.A327S	CTTTTGCCAAAAT	.	55	10	57	0	.	0	0	0	0	0
OSTC	58505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	109571838	109571838	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	OSTC-131	NM_001267818	exon1	c.C27T	p.F9F	CCCGTTCTTAGTG	.	131	42	90	0	.	37	27	10	0	0
NDUFS6	4726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	1801592	1801592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	NDUFS6-226	NM_004553	exon1	c.C61A	p.L21M	CGGAGCCTGCCCC	.	44	21	32	0	.	37	21	16	0	0
JAKMIP2	9832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	147010974	147010974	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	JAKMIP2-154	NM_001270934	exon14	c.1812+2T>C	.	CTGCCTACCTTAA	.	53	13	65	0	.	0	0	0	0	0
C6orf195	154386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	2623684	2623684	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	C6orf195-90	NM_152554	exon3	c.G373T	p.E125X	AAGCTTCATTGCT	.	75	27	64	0	.	0	0	0	0	0
C6orf223	221416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43970795	43970795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	C6orf223-68	NM_153246	exon4	c.C661T	p.R221C	CTAATGCGCTCTA	.	88	37	88	0	.	0	0	0	0	0
RUNX2	860	hgsc.bcm.edu	37	6	45390466	45390466	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	RUNX2-417	NM_001024630	exon3	c.A195G	p.Q65Q	GCAGCAACAGCAG	.	67	4	43	0	.	2812	33	2779	0	0
KIAA1919	91749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	111587895	111587895	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	KIAA1919-93	NM_153369	exon4	c.A1130T	p.Q377L	TTCTTCAAGGAAA	.	220	67	205	0	.	1	0	1	0	0
MLLT4	4301	ucsc.edu;bcgsc.ca	37	6	168276027	168276027	+	Silent	SNP	A	A	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	MLLT4-685	NM_001040000	exon5	c.A591C	p.R197R	TTCTCGACTGGCT	.	275	87	259	2	.	0	0	0	0	0
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	169622311	169622311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	THBS2-95	NM_003247	exon20	c.C3254A	p.T1085K	TTCCCCGTGTGCC	.	102	25	150	0	.	33	23	10	0	0
CCM2	83605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	45104062	45104062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	CCM2-90	NM_001029835	exon4	c.A352G	p.R118G	TTCCAGAGAGCCC	.	75	11	41	0	.	0	0	0	0	0
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82532016	82532016	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PCLO-29	NM_014510	exon9	c.T13479C	p.P4493P	TGCGTGAGGAAAG	.	111	63	89	0	.	0	0	0	0	0
AGFG2	3268	hgsc.bcm.edu;broad.mit.edu	37	7	100160553	100160553	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	AGFG2-90	NM_006076	exon9	c.C1155T	p.P385P	CCAGCCCAATGGC	.	36	7	27	0	.	17	12	5	0	0
CHCHD3	54927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	132523165	132523165	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	CHCHD3-90	NM_017812	exon6	c.A518C	p.K173T	TTGAACTTTGCTT	.	75	39	69	0	.	0	0	0	0	0
TRPV6	55503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142569741	142569741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	TRPV6-92	NM_018646	exon15	c.G1897T	p.V633L	CTTCCACCCTGTG	.	145	30	114	1	.	0	0	0	0	0
NUB1	51667	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151064971	151064971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	NUB1-226	NM_016118	exon10	c.C1084A	p.L362M	AAGGTACTGTTTC	.	25	6	26	0	.	19	15	4	0	0
KCNV1	27012	hgsc.bcm.edu	37	8	110986410	110986410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	KCNV1-226	NM_014379	exon1	c.G208T	p.V70L	CCACCACGGCCAG	.	15	8	18	0	.	1	0	1	0	0
ASTN2	23245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	119202962	119202962	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ASTN2-161	NM_014010	exon21	c.C3555A	p.V1185V	GTGCTGGACTCGG	.	133	50	121	1	.	5	4	1	0	0
PTRH1	138428	ucsc.edu	37	9	130476385	130476385	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PTRH1-90	NM_001002913	exon5	c.G639A	p.G213G	TCACGGCCCCAGT	.	21	1	29	0	.	16	11	5	0	0
GOLGA2	2801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131028577	131028577	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	GOLGA2-91	NM_004486	exon8	c.C589T	p.Q197X	CCAACTGATCCGT	.	107	39	124	0	.	0	0	0	0	0
UBAC1	10422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	138839743	138839743	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	UBAC1-92	NM_016172	exon4	c.A342G	p.Q114Q	CTGGTCTTGTTTT	.	34	15	30	0	.	0	0	0	0	0
NOTCH1	4851	ucsc.edu	37	9	139418248	139418248	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	NOTCH1-5459	NM_017617	exon3	c.C324T	p.T108T	GGGGTTGGTGAGG	.	42	4	38	0	.	0	0	0	0	0
GLUD2	2747	ucsc.edu	37	X	120182805	120182805	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	GLUD2-131	NM_012084	exon1	c.T1267A	p.L423M	AACATTTTGGTTA	.	124	2	121	0	.	79	0	79	0	0
RPL10	6134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153627911	153627911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	RPL10-130	NM_001256577	exon4	c.G166A	p.E56K	TCAGATGAATATG	.	89	50	91	0	.	1065	187	877	0	1
TMEM52	339456	broad.mit.edu	37	1	1850628	1850636	+	In_Frame_Del	DEL	AGCGGCAGG	AGCGGCAGG	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	AGCGGCAGG	AGCGGCAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	TMEM52-68	NM_178545	exon1	c.69_77del	p.23_26del	TGCGGCAGCGGCA	.	7	3	5	0	.	0	0	0	0	0
MRPL9	65005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	151735603	151735616	+	Frame_Shift_Del	DEL	CGCTCCACGATGAC	CGCTCCACGATGAC	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	CGCTCCACGATGAC	CGCTCCACGATGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	MRPL9-91	NM_031420	exon2	c.160_173del	p.54_58del	.	.	47	12	52	0	.	0	0	0	0	0
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	73745646	73745646	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	C2CD3-75	NM_015531	exon31	c.5889delC	p.Y1963fs	.	.	40	10	51	0	.	0	0	0	0	0
HAPLN3	145864	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	89422488	89422488	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	HAPLN3-90	NM_178232	exon4	c.506delC	p.P169fs	.	.	65	19	68	0	.	0	0	0	0	0
PLEKHB2	55041	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	131904282	131904282	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PLEKHB2-92	NM_001267062	exon9	c.647delC	p.A216fs	.	.	311	83	293	0	.	0	0	0	0	0
PLEKHB2	55041	hgsc.bcm.edu	37	2	131904282	131904284	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PLEKHB2-92	NM_001267062	exon9	c.647_649del	p.216_217del	.	.	317	51	302	0	.	0	0	0	0	0
AZI2	64343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	28382066	28382066	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	AZI2-92	NM_001134432	exon2	c.43delG	p.E15fs	.	.	127	50	121	0	.	0	0	0	0	0
CISH	1154	broad.mit.edu;bcgsc.ca	37	3	50645554	50645554	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	CISH-710	NM_013324	exon4	c.312delT	p.I104fs	GGCCGTAATGGAA	.	69	10	66	0	.	0	0	0	0	0
RASA2	5922	broad.mit.edu;bcgsc.ca	37	3	141326509	141326518	+	Splice_Site	DEL	TTATTATTTA	TTATTATTTA	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	TTATTATTTA	TTATTATTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	RASA2-661	.	.	.	.	CTTTTTTTATTAT	.	35	21	34	0	.	0	0	0	0	0
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	57182080	57182080	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	KIAA1211-70	NM_020722	exon8	c.2412delT	p.P804fs	.	.	65	22	94	0	.	0	0	0	0	0
GFRAL	389400	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	55223709	55223709	+	Nonsense_Mutation	DEL	C	C	-	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	GFRAL-154	NM_207410	exon6	c.725delC	p.S242X	.	.	130	46	112	0	.	0	0	0	0	0
PROX1	5629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	214170437	214170438	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PROX1-654	NM_001270616	exon2	c.559_560insAT	p.N187fs	.	.	74	21	79	0	.	0	0	0	0	0
SRCAP	10847	broad.mit.edu	37	16	30736370	30736371	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	SRCAP-94	NM_006662	exon25	c.5625_5626insC	p.Q1875fs	ACGCCAGCCCCCC	.	237	0	145	0	.	0	0	0	0	0
DNAJC28	54943	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	34861049	34861050	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	DNAJC28-90	NM_017833	exon2	c.652_653insT	p.D218_N219delinsX	.	.	202	51	202	0	.	0	0	0	0	0
MITF	4286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	69988260	69988261	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	MITF-524	NM_198159	exon4	c.594_595insT	p.K198fs	.	.	75	38	47	0	.	0	0	0	0	0
KDR	3791	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	55981041	55981042	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	KDR-2298	NM_002253	exon5	c.658_659insA	p.G220fs	.	.	93	27	83	0	.	0	0	0	0	0
PLEKHB2	55041	hgsc.bcm.edu;bcgsc.ca	37	2	131904283	131904284	+	Missense_Mutation	DNP	AC	AC	GG	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PLEKHB2		exon9	c.C649G	p.L211V	CTGGCACTGGGCA	.	310.0	84.0	305.0	0.0	.	0	0	0	0	0
USP19	10869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49148708	49148709	+	Missense_Mutation	DNP	TC	TC	AT	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	USP19		exon22	c.G3307A	p.E1101M	GCTGCTCTCGGTT	.	115.0	58.0	88.0	0.0	.	0	0	0	0	0