Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 RER1 11079 broad.mit.edu 37 1 2332308 2332308 + Missense_Mutation SNP C C G novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . RER1-90 NM_007033 exon5 c.C299G p.S100W GTCCTTCGCTACC . 183 4 184 0 . 354 354 0 0 0 NFIA 4774 broad.mit.edu 37 1 61554264 61554264 + Silent SNP T T C novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . NFIA-92 NM_001145512 exon3 c.T606C p.S202S ATGCTCTAATCCA . 108 3 135 0 . 17 17 0 0 0 TMED5 50999 ucsc.edu 37 1 93620447 93620447 + Splice_Site SNP T T A novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . TMED5-91 NM_016040 exon5 c.472-2A>T . GATTCCTGGAGAT . 123 1 165 0 . 0 0 0 0 0 ANKRD35 148741 bcgsc.ca 37 1 145555716 145555716 + Missense_Mutation SNP C C A novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . ANKRD35-95 NM_144698 exon2 c.C64A p.Q22K CATGATCAGAAGC . 102 6 62 0 . 0 0 0 0 0 FMOD 2331 broad.mit.edu 37 1 203311609 203311609 + Missense_Mutation SNP G G T novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . FMOD-137 NM_002023 exon3 c.C993A p.S331R GAAGCTGCTGATG . 58 6 38 0 . 0 0 0 0 0 SORCS1 114815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 108427534 108427534 + Missense_Mutation SNP T T C novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . SORCS1-153 NM_001206572 exon17 c.A2216G p.N739S TGGCCATTGCTGT . 34 31 36 0 . 0 0 0 0 0 OR52J3 119679 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 5068288 5068288 + Missense_Mutation SNP A A T novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . OR52J3-71 NM_001001916 exon1 c.A533T p.H178L TAGCCCATTCCTA . 117 112 163 0 . 0 0 0 0 0 IL10RA 3587 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 117866403 117866403 + Missense_Mutation SNP G G A rs145975996 TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . IL10RA-91 NM_001558 exon6 c.G788A p.R263Q GGCGCCGAAAGAA . 42 20 43 0 G|1.000;A|0.000 9 9 0 0 0 ART4 420 broad.mit.edu 37 12 14993941 14993941 + Nonsense_Mutation SNP C C T novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . ART4-90 NM_021071 exon2 c.G291A p.W97X TTTTTGCCACATC . 439 6 311 1 . 0 0 0 0 0 TDG 6996 hgsc.bcm.edu 37 12 104378526 104378526 + Splice_Site SNP G G T novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . TDG-661 NM_003211 exon8 c.793-1G>T . ATTCTAGCTCTGC . 76 4 50 0 . 0 0 0 0 0 ATXN2 6311 hgsc.bcm.edu 37 12 112036797 112036797 + Silent SNP C C T rs4098854 TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . ATXN2-136 NM_002973 exon1 c.G522A p.Q174Q CTGCTGCTGCTGC . 5 3 2 1 C|0.429;T|0.571 421 379 41 1 0 EFHA1 221154 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 13 22088516 22088516 + Silent SNP C C T novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . EFHA1-90 NM_152726 exon7 c.G639A p.V213V AGTTTTCACTGTC . 93 9 98 0 . 97 94 3 0 0 KL 9365 hgsc.bcm.edu;broad.mit.edu 37 13 33591068 33591068 + Missense_Mutation SNP G G C novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . KL-155 NM_004795 exon1 c.G490C p.V164L GCGGGCGTCCCCA . 24 10 24 0 . 53 1 52 0 0 COX8C 341947 hgsc.bcm.edu 37 14 93813725 93813725 + Silent SNP G G T rs201840112 TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . COX8C-226 NM_182971 exon1 c.G111T p.R37R CCAGCGGCCCCTG . 13 12 4 2 G|0.996;T|0.004 0 0 0 0 0 AKT1 207 hgsc.bcm.edu 37 14 105237141 105237141 + Missense_Mutation SNP G G C novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . AKT1-9189 NM_005163 exon13 c.C1304G p.T435S TACCTGGTGTCAG . 36 2 44 0 . 144 144 0 0 0 PKD1 5310 hgsc.bcm.edu 37 16 2168405 2168405 + Silent SNP G G A novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . PKD1-91 NM_000296 exon5 c.C588T p.S196S TGAAAAGGACACT . 37 8 27 0 . 51 48 3 0 0 RANBP10 57610 hgsc.bcm.edu;broad.mit.edu 37 16 67840335 67840335 + Silent SNP C C T novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . RANBP10-227 NM_020850 exon1 c.G105A p.L35L CCGGCTCAGCTCC . 18 6 14 0 . 15 9 6 0 0 ZFHX3 463 broad.mit.edu 37 16 72984648 72984648 + Missense_Mutation SNP A A C novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . ZFHX3-72 NM_006885 exon3 c.T2936G p.V979G CCCATCACCGCCT . 113 8 69 1 . 7 6 0 0 1 TVP23C 201158 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA . 793 114 496 71 . 97 12 85 0 0 AKAP10 11216 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 19861611 19861611 + Missense_Mutation SNP A A G novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . AKAP10-226 NM_007202 exon4 c.T593C p.F198S GTTAAAAAAGACG . 99 49 73 0 . 26 17 9 0 0 SLC14A1 6563 bcgsc.ca 37 18 43319599 43319599 + Nonsense_Mutation SNP G G A novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . SLC14A1-515 NM_001146037 exon7 c.G1086A p.W362X CACCTGGCAAACC . 91 5 124 0 . 0 0 0 0 0 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 9065718 9065718 + Missense_Mutation SNP G G T novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . MUC16-566 NM_024690 exon3 c.C21728A p.S7243Y CTCAGGGAGGAAA . 220 16 198 0 . 0 0 0 0 0 ZNF761 388561 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 53958709 53958709 + Missense_Mutation SNP T T A novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . ZNF761-91 NM_001008401 exon7 c.T948A p.H316Q AAGACATAGGATA . 114 97 114 0 . 0 0 0 0 0 ZNF761 388561 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 53958711 53958711 + Missense_Mutation SNP G G A novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . ZNF761-91 NM_001008401 exon7 c.G950A p.R317K GACATAGGATAAT . 114 98 115 0 . 0 0 0 0 0 XPO1 7514 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 61709536 61709536 + Missense_Mutation SNP G G A novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . XPO1-229 NM_003400 exon23 c.C2951T p.S984L AAGGCCGACTTAA . 128 12 156 0 . 123 107 16 0 0 LRP1B 53353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 141643776 141643776 + Missense_Mutation SNP G G C novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . LRP1B-311 NM_018557 exon24 c.C3895G p.Q1299E AACTTTGATTGAA . 97 80 97 0 . 0 0 0 0 0 ARL6IP6 151188 broad.mit.edu 37 2 153591621 153591621 + Missense_Mutation SNP C C T novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . ARL6IP6-90 NM_152522 exon3 c.C568T p.L190F ACTCCTCTTTCAC . 134 5 179 0 . 34 33 1 0 0 FSIP2 401024 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 186671400 186671400 + Silent SNP T T C novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . FSIP2-90 NM_173651 exon17 c.T17634C p.D5878D AGAAGATGTTATT . 62 60 89 1 . 0 0 0 0 0 ACADL 33 bcgsc.ca 37 2 211057527 211057527 + Splice_Site SNP C C G novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . ACADL-90 NM_001608 exon11 c.1199+1G>C . TACTTACTTTGCA . 67 63 63 0 . 0 0 0 0 0 GGTLC1 92086 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 23967129 23967129 + Silent SNP C C T novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . GGTLC1-23 NM_178311 exon2 c.G120A p.L40L CACAGACAGGTGA . 101 56 56 0 . 0 0 0 0 0 MATN4 8785 broad.mit.edu 37 20 43927153 43927153 + Silent SNP G G A novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . MATN4-90 NM_003833 exon7 c.C1083T p.F361F TAGCTCGAAGTTT . 236 7 83 0 . 0 0 0 0 0 OGFR 11054 hgsc.bcm.edu 37 20 61443716 61443716 + Missense_Mutation SNP G G A rs41309371 TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . OGFR-68 NM_007346 exon7 c.G749A p.R250Q GGGTGCGGCAGAG . 18 10 6 2 G|0.989;A|0.011 112 76 36 0 0 TMPRSS15 5651 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 19685347 19685347 + Silent SNP T T G rs111276490 alternate_allele TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . TMPRSS15-160 NM_002772 exon18 c.A2080C p.R694R GGATTCTGAACCG . 114 107 119 0 T|0.500;C|0.500 0 0 0 0 0 TXNRD2 10587 broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 19870863 19870863 + Silent SNP A A T novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . TXNRD2-92 . . . . GTCACCAATGGCG . 85 74 102 0 . 52 1 51 0 0 CCDC116 164592 broad.mit.edu;bcgsc.ca 37 22 21989095 21989095 + Nonsense_Mutation SNP C C G novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . CCDC116-92 NM_152612 exon4 c.C743G p.S248X TGGGCTCAAGCTC . 165 7 160 0 . 0 0 0 0 0 SH3BP1 23616 hgsc.bcm.edu 37 22 38051328 38051328 + Silent SNP C C A rs61678571 alternate_allele TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . SH3BP1-90 NM_018957 exon18 c.C1743A p.S581S GGTCTCCGGCTCC . 25 2 16 0 C|0.984;T|0.016 3 3 0 0 0 OXTR 5021 ucsc.edu;bcgsc.ca 37 3 8809676 8809676 + Silent SNP G G A novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . OXTR-68 NM_000916 exon3 c.C198T p.T66T GCGTGTGGTGCGC . 20 4 22 0 . 0 0 0 0 0 CCR5 1234 broad.mit.edu;bcgsc.ca 37 3 46415326 46415326 + Silent SNP C C T novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . CCR5-993 NM_000579 exon3 c.C933T p.F311F AGTCTTCTTCCAA . 283 8 300 0 . 3 3 0 0 0 ACTL6A 86 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 179304341 179304341 + Missense_Mutation SNP G G A novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . ACTL6A-91 NM_004301 exon13 c.G1130A p.R377Q GTATGCGGTTGAA . 61 53 75 0 . 2 0 2 0 0 SH3BP2 6452 hgsc.bcm.edu 37 4 2824707 2824707 + Missense_Mutation SNP T T C novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . SH3BP2-514 NM_001145856 exon3 c.T353C p.F118S ACTACTTCAAGAG . 34 2 26 0 . 5 5 0 0 0 MAML3 55534 hgsc.bcm.edu 37 4 140811129 140811129 + Silent SNP T T C rs62344941 TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . MAML3-455 NM_018717 exon2 c.A1461G p.Q487Q TTGCTGTTGCTGT . 18 3 27 1 . 2 2 0 0 0 HAND2 9464 broad.mit.edu 37 4 174449979 174449979 + Silent SNP C C T novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . HAND2-91 NM_021973 exon1 c.G462A p.L154L GGCCAGCAGGTCC . 86 4 102 0 . 0 0 0 0 0 KLHL3 26249 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 136963990 136963990 + Silent SNP G G A novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . KLHL3-90 NM_017415 exon13 c.C1587T p.N529N ACCTGCGTTGCGC . 260 90 145 0 . 0 0 0 0 0 PCDHGA1 56114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140711928 140711928 + Silent SNP G G A novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . PCDHGA1-137 NM_018912 exon1 c.G1677A p.A559A CAACGCGCCCGAG . 431 204 320 0 . 6 4 2 0 0 DRD1 1812 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 174870046 174870046 + Silent SNP G G A novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . DRD1-93 NM_000794 exon2 c.C57T p.D19D AGAGAAGTCCCTC . 190 77 122 0 . 0 0 0 0 0 UBR2 23304 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 42657391 42657391 + Silent SNP G G A novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . UBR2-94 NM_015255 exon46 c.G5109A p.E1703E TGGGGAGACCGAC . 393 351 495 0 . 48 0 48 0 0 DOPEY1 23033 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 83862077 83862077 + Silent SNP A A G novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . DOPEY1-155 NM_015018 exon30 c.A6120G p.L2040L GACATTACTCTCT . 66 4 62 0 . 0 0 0 0 0 USP45 85015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 99930682 99930682 + Missense_Mutation SNP C C A novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . USP45-637 NM_001080481 exon8 c.G792T p.E264D TTCAGTCTCCTTC . 86 80 100 0 . 2 0 2 0 0 HOXA5 3202 broad.mit.edu 37 7 27182685 27182685 + Missense_Mutation SNP C C T novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . HOXA5-514 NM_019102 exon1 c.G542A p.R181H AGCTTGCGCATCC . 459 5 275 0 . 18 18 0 0 0 C7orf41 222166 broad.mit.edu 37 7 30197075 30197075 + Missense_Mutation SNP G G A novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . C7orf41-90 NM_152793 exon3 c.G307A p.D103N GATGCAGATGACG . 492 7 297 0 . 39 38 0 0 1 IRF5 3663 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 128587532 128587532 + Missense_Mutation SNP C C T novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . IRF5-226 NM_001098629 exon6 c.C730T p.P244S AGCCTGCCCCCTG . 54 23 40 0 . 84 47 37 0 0 PODXL 5420 hgsc.bcm.edu 37 7 131241029 131241029 + Silent SNP G G C novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . PODXL-136 NM_001018111 exon1 c.C90G p.P30P CTGGGAGGGCGAC . 7 3 5 0 . 0 0 0 0 0 KIAA1429 25962 broad.mit.edu 37 8 95503873 95503873 + Silent SNP T T C novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . KIAA1429-92 NM_015496 exon22 c.A5073G p.S1691S ATTGCCTGAAAAC . 142 3 153 0 . 39 38 1 0 0 BAAT 570 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 104125282 104125282 + Missense_Mutation SNP C C T rs141722672 TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . BAAT-228 NM_001127610 exon4 c.G685A p.V229I CCCCAACGCCTGA . 71 26 91 0 C|0.999;T|0.001 1 1 0 0 0 ADAMTSL2 9719 hgsc.bcm.edu 37 9 136419613 136419613 + Silent SNP C C T novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . ADAMTSL2-91 NM_014694 exon10 c.C1074T p.A358A CGGGGCCGGGCTG . 4 4 5 0 . 2 0 2 0 0 SHROOM4 57477 hgsc.bcm.edu 37 X 50350698 50350698 + Silent SNP C C T novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . SHROOM4-131 NM_020717 exon6 c.G3444A p.E1148E CTCCTCCTCCTCT . 23 6 15 1 . 11 11 0 0 0 COL4A6 1288 broad.mit.edu 37 X 107434729 107434729 + Silent SNP T T C novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . COL4A6-199 NM_001847 exon19 c.A1218G p.P406P CAGCCCTGGAAAT . 218 5 242 0 . 0 0 0 0 0 SCAF11 9169 broad.mit.edu 37 12 46320707 46320708 + Frame_Shift_Del DEL TC TC - novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 TC TC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . SCAF11-93 NM_004719 exon11 c.2776_2777del p.926_926del CTCCTTTCTCTCT . 498 11 272 0 . 0 0 0 0 0 ACADL 33 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 211057526 211057526 + Splice_Site DEL A A - novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . ACADL-90 NM_001608 exon11 c.1199+2T>- . . . 66 63 65 0 . 0 0 0 0 0 ACADL 33 hgsc.bcm.edu 37 2 211057526 211057527 + Splice_Site DEL AC AC - novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 AC AC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . ACADL-90 . . . . . . 67 34 67 0 . 0 0 0 0 0 SETD2 29072 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 47162849 47162850 + Frame_Shift_Del DEL TT TT - novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 TT TT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . SETD2-1273 NM_014159 exon3 c.3276_3277del p.1092_1093del . . 141 121 167 0 . 0 0 0 0 0 KL 9365 bcgsc.ca 37 13 33591076 33591077 + Missense_Mutation DNP CC CC TG novel TCGA-BQ-5891-01A-11D-1589-08 TCGA-BQ-5891-11A-01D-1589-08 CC CC - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 37d4ff42-0161-4f83-bd6f-13eb19d4eabf 28824279-2be9-45db-867a-b165d8191d0c . KL-155 NM_004795 exon1 c.C499G p.R167G CCCAACCGCGAGG . 15 4 21 0 . 0 0 0 0 0