Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
NOC2L	26155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	891312	891312	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	NOC2L-92	NM_015658	exon6	c.A689C	p.D230A	CTGCTATCCTTTG	.	29	20	42	0	.	0	0	0	0	0
MMEL1	79258	broad.mit.edu	37	1	2540842	2540842	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MMEL1-90	NM_033467	exon6	c.G471A	p.S157S	GGCAGTCGAATTC	.	19	3	23	0	.	0	0	0	0	0
ATP13A2	23400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	17322884	17322884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ATP13A2-93	NM_022089	exon13	c.C1303A	p.L435M	CACCCAGGACAGA	.	90	35	97	0	.	0	0	0	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	.	NM_001039703	exon83	c.A10335G	p.K3445K	GGGGAAAAAAAGA	.	120	3	145	1	.	75	3	72	0	0
MRPL9	65005	broad.mit.edu	37	1	151735832	151735832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MRPL9-91	NM_031420	exon1	c.G124A	p.A42T	TGCAGGCCAGGTC	.	8	3	11	0	.	62	27	35	0	0
FCER1G	2207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161185157	161185157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	FCER1G-90	NM_004106	exon1	c.G46T	p.A16S	GAACAAGCAGGTA	.	147	45	172	1	.	0	0	0	0	0
FCGR2A	2212	hgsc.bcm.edu;broad.mit.edu	37	1	161487871	161487871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	FCGR2A-91	NM_001136219	exon7	c.C887A	p.P296H	GGGCACCTACTGA	.	111	35	115	0	.	38	38	0	0	0
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201030589	201030589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	CACNA1S-94	NM_000069	exon25	c.T3061C	p.Y1021H	CCTTGTACAGCAG	.	83	17	54	0	.	0	0	0	0	0
NAV1	89796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201781618	201781618	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	NAV1-228	NM_020443	exon27	c.G5050T	p.E1684X	AACGTGGAGCCAG	.	182	84	107	0	.	0	0	0	0	0
PLEKHA6	22874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204236626	204236626	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PLEKHA6-654	NM_014935	exon5	c.A257T	p.D86V	CAGCGATCCACCA	.	125	40	73	0	.	16	12	4	0	0
KIAA1804	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	233518317	233518317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	KIAA1804-523	NM_032435	exon10	c.A2971G	p.R991G	AAGGAGAGAACTA	.	149	39	94	0	.	15	10	5	0	0
TBCE	6905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235599915	235599915	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	TBCE-90	NM_003193	exon11	c.A955C	p.I319L	AATCAGATATCAC	.	158	34	126	0	.	0	0	0	0	0
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	63699986	63699986	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ARID5B-94	NM_032199	exon3	c.A321G	p.E107E	GCTTGAAGACCTG	.	118	39	140	1	.	0	0	0	0	0
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	124351862	124351862	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	DMBT1-494	NM_007329	exon20	c.C2251A	p.R751R	CTATACCGAGGCT	.	437	141	397	1	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1092622	1092622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MUC2-90	NM_002457	exon30	c.A4441G	p.T1481A	CCTCCAACCACCA	.	12	6	4	0	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1092795	1092795	+	Silent	SNP	T	T	A	rs12786761		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MUC2-90	NM_002457	exon30	c.T4614A	p.T1538T	CACCACTCCCATC	.	11	8	2	1	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1092891	1092891	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MUC2-90	NM_002457	exon30	c.C4710A	p.T1570T	GGTGACCCCAACC	.	115	12	21	0	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1092909	1092909	+	Silent	SNP	C	C	T	rs111487794		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MUC2-90	NM_002457	exon30	c.C4728T	p.T1576T	ACCCACCGGCACA	.	114	10	17	1	C|0.500;T|0.500	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1093254	1093254	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MUC2-90	NM_002457	exon30	c.C5073T	p.T1691T	ACCCACCGGCACA	.	56	3	10	0	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1093531	1093531	+	Missense_Mutation	SNP	A	A	G	rs56104295		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MUC2-90	NM_002457	exon30	c.A5350G	p.S1784G	CCCACCAGCACAA	.	31	7	14	1	.	0	0	0	0	0
CD81	975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	2417109	2417109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	CD81-650	NM_004356	exon6	c.G470T	p.C157F	ACTGCTGTGGCTC	.	75	32	70	0	.	0	0	0	0	0
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	21581738	21581738	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	NELL1-155	NM_006157	exon17	c.T1790G	p.I597S	CAGACATTGATGA	.	144	60	181	0	.	0	0	0	0	0
SLC5A12	159963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	26742996	26742996	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	SLC5A12-92	NM_178498	exon1	c.T266A	p.L89Q	ACAAATAGGTAAG	.	66	28	81	0	.	8	2	6	0	0
FLRT1	23769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63884401	63884401	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	FLRT1-90	NM_013280	exon2	c.T662A	p.L221H	AGGGCCTCAACAG	.	44	13	50	0	.	0	0	0	0	0
PITPNM1	9600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67265787	67265787	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PITPNM1-227	NM_001130848	exon11	c.C1491T	p.S497S	GTAAGGGCTCAGG	.	23	8	24	0	.	1	0	1	0	0
KDM5A	5927	broad.mit.edu	37	12	472130	472130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	KDM5A-227	NM_001042603	exon5	c.A671G	p.Q224R	GATACCTGAGTCT	.	117	3	109	0	.	0	0	0	0	0
WNK1	65125	broad.mit.edu;bcgsc.ca	37	12	977170	977170	+	Missense_Mutation	SNP	C	C	T	rs200794710		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	WNK1-916	NM_213655	exon10	c.C2533T	p.R845C	CAGCGGCGTAAGA	.	134	7	93	0	.	0	0	0	0	0
KRT2	3849	hgsc.bcm.edu	37	12	53045597	53045597	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	KRT2-92	NM_000423	exon1	c.T330A	p.G110G	ACCACCACCACTG	.	24	4	19	0	.	0	0	0	0	0
KCNC2	3747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	75441966	75441966	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	KCNC2-224	NM_139137	exon4	c.T1747G	p.Y583D	ACGTGTAATCACC	.	286	108	284	0	.	0	0	0	0	0
NUAK1	9891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	106460987	106460987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	NUAK1-359	NM_014840	exon7	c.C1579A	p.H527N	TGCTGTGTTTCAA	.	121	53	113	0	.	1	1	0	0	0
TBX3	6926	broad.mit.edu	37	12	115120983	115120983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	TBX3-93	NM_005996	exon1	c.C23T	p.P8L	ATGACCGGATCTC	.	103	3	87	0	.	0	0	0	0	0
FZD10	11211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	130648407	130648407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	FZD10-658	NM_007197	exon1	c.C920A	p.T307N	AGAGCACCGGCTG	.	89	27	95	1	.	0	0	0	0	0
RNF17	56163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	25352542	25352542	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	RNF17-228	NM_001184993	exon4	c.T427C	p.L143L	GTAATGTTGGTAT	.	197	60	171	0	.	0	0	0	0	0
PABPC3	5042	hgsc.bcm.edu	37	13	25671451	25671451	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PABPC3-72	NM_030979	exon1	c.A1115G	p.E372G	GCAAAGAAGAGCG	.	143	11	133	2	.	1	1	0	0	0
SYNE2	23224	broad.mit.edu	37	14	64669634	64669634	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	SYNE2-164	NM_182914	exon100	c.G18154C	p.D6052H	GTTTATGATGTCT	.	74	4	88	0	.	21	21	0	0	0
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75981607	75981607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	CSPG4-229	NM_001897	exon3	c.G1799A	p.G600D	GGGAGGCCAGAGG	.	49	23	47	0	.	1	1	0	0	0
MCTP2	55784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	94884070	94884070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MCTP2-93	NM_001159643	exon6	c.G886T	p.D296Y	CTGGAAGATCCAA	.	56	25	63	0	.	2	1	1	0	0
PRSS21	10942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2868724	2868724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PRSS21-92	NM_144957	exon4	c.C304G	p.Q102E	TTTGGCCAGCTGA	.	184	35	98	0	.	0	0	0	0	0
ZNF597	146434	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	3487524	3487524	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ZNF597-90	NM_152457	exon4	c.C175G	p.P59A	TCTCAGGCTTGCC	.	145	91	82	0	.	4	4	0	0	0
USP31	57478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	23083424	23083424	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	USP31-663	NM_020718	exon15	c.C2430A	p.T810T	CAGGGAGGTGCGT	.	232	20	134	0	.	4	2	2	0	0
NUP93	9688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56792502	56792502	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	NUP93-205	NM_014669	exon3	c.T232C	p.L78L	CAGCGATTGGAGA	.	98	37	112	0	.	25	17	8	0	0
COG8	84342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69368791	69368791	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	COG8-91	NM_032382	exon3	c.G1046C	p.C349S	TACATGCACTGGC	.	93	34	103	0	.	20	13	7	0	0
ZNF778	197320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89294017	89294017	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	.	NM_001201407	exon7	c.C1321T	p.R441X	CACGTACGAACAC	.	80	23	71	0	.	3	2	1	0	0
DEF8	54849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	90015887	90015887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	DEF8-68	NM_207514	exon2	c.C14A	p.S5Y	TCCTGTCCCTGCG	.	90	31	86	0	.	11	4	7	0	0
SLC35G6	643664	broad.mit.edu	37	17	7385463	7385463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	.	NM_001102614	exon2	c.G160A	p.V54M	GGCTTCGTGGGCC	.	163	6	141	1	.	0	0	0	0	0
KDM6B	23135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7755372	7755372	+	Silent	SNP	T	T	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	KDM6B-205	NM_001080424	exon18	c.T4269G	p.A1423A	CAGCGCTTTCTGT	.	63	19	57	0	.	0	0	0	0	0
KPNB1	3837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45753779	45753779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	KPNB1-229	NM_002265	exon16	c.A1917T	p.X639C	AGTGTTGGGTGGT	.	114	32	79	1	.	1	0	1	0	0
ERN1	2081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62121548	62121548	+	Missense_Mutation	SNP	G	G	A	rs185854736		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ERN1-784	NM_001433	exon22	c.C2734T	p.R912W	GCTCCCGGTAGTG	.	58	20	51	0	G|0.999;A|0.000	0	0	0	0	0
ABCA9	10350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66981100	66981100	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ABCA9-95	NM_080283	exon34	c.C4305T	p.I1435I	CCCCAGGATGCTC	.	174	31	116	0	.	0	0	0	0	0
ABCA10	10349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	67170778	67170778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ABCA10-93	NM_080282	exon25	c.C3018A	p.F1006L	AAGCTGGAATCCC	.	231	71	143	0	.	0	0	0	0	0
FASN	2194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80050833	80050833	+	Missense_Mutation	SNP	G	G	A	rs200752265	alternate_allele	TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	FASN-90	NM_004104	exon6	c.C718T	p.R240W	CCCGCCGGGCCAG	.	37	12	24	0	G|0.998;T|0.002	8	5	3	0	0
MED16	10025	hgsc.bcm.edu	37	19	879943	879943	+	Missense_Mutation	SNP	G	G	C	rs76403059		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MED16-186	NM_005481	exon8	c.C1347G	p.H449Q	CTTCCCGTGGCTG	.	19	2	15	1	.	0	0	0	0	0
MOB3A	126308	ucsc.edu	37	19	2076916	2076916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	.	NM_130807	exon4	c.G518A	p.R173H	GCGATGCGGTCAA	.	33	4	36	0	.	3	3	0	0	0
ZNF558	148156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8922351	8922351	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ZNF558-90	NM_144693	exon6	c.C815G	p.A272G	CTGAAAGCTTTTC	.	214	73	188	1	.	1	1	0	0	0
PPP1R15A	23645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49379135	49379135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PPP1R15A-226	NM_014330	exon3	c.G1930A	p.V644I	TCCCCAGTCCAGA	.	284	91	247	0	.	117	69	48	0	0
ZNF773	374928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58018434	58018434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ZNF773-91	NM_198542	exon4	c.T971C	p.V324A	AGAGAGTTCACAC	.	200	47	219	0	.	2	2	0	0	0
ZNF418	147686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58437999	58437999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ZNF418-90	NM_133460	exon4	c.A1550G	p.K517R	AATGACTTCCCAC	.	165	65	185	1	.	0	0	0	0	0
PLB1	151056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	28847964	28847964	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PLB1-141	NM_153021	exon50	c.A3568C	p.K1190Q	CGAATGAAAAACA	.	128	38	117	1	.	0	0	0	0	0
TFCP2L1	29842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	121991738	121991738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	TFCP2L1-93	NM_014553	exon12	c.G1127A	p.C376Y	TCCTGACAGACAT	.	87	32	90	0	.	1	1	0	0	0
ABCA12	26154	broad.mit.edu	37	2	215880304	215880304	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ABCA12-99	NM_173076	exon15	c.C1866A	p.C622X	CAGGTTGCAGAAT	.	54	3	53	0	.	0	0	0	0	0
CNPPD1	27013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220039577	220039577	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	CNPPD1-90	NM_015680	exon5	c.A433C	p.N145H	CGTCGTTGAAGAC	.	91	31	77	0	.	100	55	45	0	0
AGXT	189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241808770	241808770	+	Missense_Mutation	SNP	G	G	A	rs180177208	alternate_allele	TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	AGXT-90	NM_000030	exon2	c.G349A	p.E117K	ATCGGGGAGCGCA	.	87	32	82	0	.	0	0	0	0	0
PASK	23178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242065794	242065794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PASK-536	NM_015148	exon10	c.C2536T	p.H846Y	GAACGTGTCCTGG	.	165	59	132	0	.	4	1	3	0	0
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	8741054	8741054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PLCB1-297	NM_015192	exon25	c.A2657T	p.Q886L	TTACAGGTTCTGT	.	69	21	71	0	.	0	0	0	0	0
KCNS1	3787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	43726464	43726464	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	KCNS1-90	NM_002251	exon4	c.T949A	p.Y317N	TGAGATAGAAGGG	.	29	16	32	0	.	0	0	0	0	0
WFDC2	10406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44108666	44108666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	WFDC2-90	NM_006103	exon3	c.G308A	p.C103Y	GCCAGTGTCCTGG	.	181	74	217	0	.	5142	2476	2666	0	0
DNTTIP1	116092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	44424050	44424050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	DNTTIP1-91	NM_052951	exon4	c.A340G	p.I114V	CAGCTGATCCAGG	.	18	7	29	0	.	46	27	19	0	0
PSMA7	5688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	60714841	60714841	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PSMA7-90	NM_002792	exon3	c.A344C	p.K115T	ACCTGCTTCAGAC	.	64	21	59	0	.	2	1	1	0	0
PRPF6	24148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62642772	62642772	+	Silent	SNP	G	G	C	rs199552405	alternate_allele	TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PRPF6-70	NM_012469	exon11	c.G1440C	p.T480T	GAACACGCAGATG	.	46	12	52	0	G|0.999;A|0.000	90	47	43	0	0
SON	6651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34925625	34925625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	SON-97	NM_032195	exon3	c.C4088T	p.S1363L	AGTCTTCGGCTGT	.	68	17	54	0	.	25	15	10	0	0
SYN2	6854	broad.mit.edu;bcgsc.ca	37	3	12192767	12192767	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	SYN2-24	.	.	.	.	AAGACACTGGGAG	.	8	5	21	0	.	0	0	0	0	0
ZNF502	91392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	44763320	44763320	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ZNF502-90	NM_001134440	exon4	c.C1011G	p.N337K	GGCAAACCTCTCT	.	117	79	124	0	.	0	0	0	0	0
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47032943	47032943	+	Silent	SNP	G	G	T	rs181297174	alternate_allele	TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	NBEAL2-69	NM_015175	exon8	c.G690T	p.L230L	CCTGCTGAGTGTG	.	29	22	20	0	G|0.999;C|0.000	0	0	0	0	0
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47143047	47143047	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	SETD2-1273	NM_014159	exon9	c.4918-2A>G	.	GTCCACTGAGATG	.	139	102	115	0	.	18	0	18	0	0
PLXND1	23129	hgsc.bcm.edu	37	3	129324250	129324250	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PLXND1-90	NM_015103	exon1	c.G1233C	p.P411P	GGGCGCCGGTTCC	.	5	5	8	2	.	1	1	0	0	0
NPHP3	27031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	132410108	132410108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	NPHP3-91	NM_153240	exon18	c.A2498G	p.E833G	AGGTACTCCAATC	.	308	175	251	0	.	5	3	2	0	0
AMOTL2	51421	hgsc.bcm.edu	37	3	134080584	134080584	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	AMOTL2-135	NM_016201	exon6	c.G1345T	p.E449X	GGTCCTCGATGGC	.	31	2	13	1	.	71	71	0	0	0
STX18	53407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	4436571	4436571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	STX18-90	NM_016930	exon7	c.G628A	p.E210K	GTGTTTCAGCCAA	.	71	18	88	0	.	35	21	14	0	0
YTHDC1	91746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	69185877	69185877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	YTHDC1-92	NM_001031732	exon12	c.A1648G	p.R550G	CAATCCTTGGTTT	.	81	25	113	0	.	25	20	5	0	0
ELOVL6	79071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	111119479	111119479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ELOVL6-91	NM_001130721	exon2	c.G13T	p.V5L	TCAACACTGACAT	.	147	45	204	0	.	6	5	1	0	0
INPP4B	8821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	143181690	143181690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	INPP4B-228	NM_003866	exon12	c.C643A	p.P215T	TTTCCGGGGCTGT	.	52	16	47	0	.	2	2	0	0	0
TIGD4	201798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	153691640	153691640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	TIGD4-91	NM_145720	exon2	c.G517A	p.D173N	GATAATCATTTAA	.	56	18	87	0	.	1	1	0	0	0
MROH2B	133558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	41048530	41048530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	.	NM_173489	exon16	c.G1580A	p.G527E	CCAGCCCCACGTA	.	58	31	63	0	.	0	0	0	0	0
FOXD1	2297	broad.mit.edu	37	5	72743507	72743507	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	.	.	.	.	.	GGGTGGGAGCAGC	.	29	4	18	0	.	0	0	0	0	0
KLHL3	26249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	136975648	136975648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	KLHL3-90	NM_017415	exon9	c.G922A	p.G308S	CCTGGCCGCCAAC	.	90	20	78	0	.	0	0	0	0	0
FAM13B	51306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137289855	137289855	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	.	NM_001101800	exon14	c.G1652C	p.R551T	ATATACCTAGTAA	.	77	17	64	0	.	0	0	0	0	0
PCDHB9	56127	broad.mit.edu;bcgsc.ca	37	5	140567235	140567235	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	.	.	.	.	.	CCCTTTCAGATTT	.	114	27	85	0	.	3	3	0	0	0
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	161281260	161281260	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	GABRA1-93	NM_001127643	exon4	c.G171A	p.L57L	TCGCCTGAGACCA	.	112	23	73	0	.	0	0	0	0	0
TNXB	7148	hgsc.bcm.edu	37	6	32049190	32049190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	TNXB-90	NM_019105	exon10	c.C3997T	p.R1333C	TGCCACGAAGCCC	.	8	5	5	0	.	1	1	0	0	0
SCUBE3	222663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35213120	35213120	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	SCUBE3-91	NM_152753	exon19	c.G2517A	p.K839K	ACCCAAGCGCAAG	.	122	39	117	0	.	0	0	0	0	0
PEX6	5190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	42932546	42932546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PEX6-91	NM_000287	exon16	c.G2788A	p.V930I	CATGAACCCTGCG	.	148	54	143	0	.	102	54	48	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51882414	51882414	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PKHD1-603	NM_170724	exon34	c.C5394T	p.F1798F	ACACAGGAAGGCC	.	103	42	102	0	.	0	0	0	0	0
ENPP1	5167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	132206107	132206107	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ENPP1-95	NM_006208	exon23	c.A2348C	p.K783T	TGCGAAAGTATGC	.	96	34	84	0	.	30	16	14	0	0
TNFAIP3	7128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	138200458	138200458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	TNFAIP3-1498	NM_001270507	exon7	c.C1876A	p.L626M	TGCACACTGTGTT	.	52	32	85	0	.	2	2	0	0	0
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	3216707	3216707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	CSMD1-86	NM_033225	exon21	c.C3271T	p.R1091C	ACACACGGCGGCC	.	120	33	117	0	.	0	0	0	0	0
IFNA16	3449	broad.mit.edu	37	9	21216839	21216839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	IFNA16-91	NM_002173	exon1	c.G466A	p.G156R	TCTTCCCCATCAG	.	582	7	545	0	.	0	0	0	0	0
CBWD6	644019	hgsc.bcm.edu	37	9	69206734	69206734	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	.	NM_001085457	exon13	c.G951A	p.K317K	CTGTACCTTCAGC	.	626	99	582	2	.	5	5	0	0	0
SPATA31D1	389763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84608073	84608073	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	.	NM_001001670	exon4	c.T2688G	p.S896R	CCTTAGTTCCAAC	.	66	26	56	0	.	0	0	0	0	0
TXN	7295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	113013695	113013695	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	TXN-90	NM_001244938	exon2	c.A72G	p.V24V	GTCAACTACTACA	.	46	12	41	0	.	1767	811	956	0	0
MVB12B	89853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	129143362	129143362	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	.	NM_001011703	exon3	c.G224C	p.G75A	CAGATGGTGTGGA	.	93	28	103	0	.	1	0	1	0	0
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	123200037	123200037	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	STAG2-134	NM_001042749	exon22	c.T2109C	p.L703L	TGACCTTTCAAAG	.	65	44	76	0	.	0	0	0	0	0
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52696272	52696272	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PBRM1-575	NM_018313	exon5	c.405delA	p.K135fs	.	.	91	61	149	0	.	0	0	0	0	0
SYNCRIP	10492	hgsc.bcm.edu;bcgsc.ca	37	6	86332353	86332354	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	SYNCRIP-92	NM_006372	exon8	c.855_856insA	p.N285fs	.	.	191	33	276	0	.	0	0	0	0	0
HOXA2	3199	broad.mit.edu;bcgsc.ca	37	7	27140389	27140390	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	HOXA2-92	NM_006735	exon2	c.1087_1088insT	p.T363fs	TGTCTGTAAAAAA	.	165	23	170	0	.	0	0	0	0	0
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	121219275	121219276	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	COL14A1-543	NM_021110	exon10	c.1133_1134insA	p.G378fs	.	.	59	19	49	0	.	0	0	0	0	0
SORBS2	8470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186545113	186545114	+	Missense_Mutation	DNP	GT	GT	AG	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	SORBS2		exon16	c.A1757C	p.H586P	TCCTTGTGCTGCT	.	114.0	49.0	108.0	0.0	.	0	0	0	0	0
LRWD1	222229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	102110042	102110043	+	Missense_Mutation	DNP	TC	TC	GA	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	LRWD1		exon10	c.C1251A	p.I417R	GCGGATCATCCTC	.	127.0	27.0	144.0	0.0	.	0	0	0	0	0
ADAM7	8756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	24357759	24357760	+	Missense_Mutation	DNP	AC	AC	CA	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ADAM7		exon18	c.C1993A	p.LH664FN	ACCTTACATGTTA	.	68.0	26.0	43.0	0.0	.	0	0	0	0	0