Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PTPRF	5792	hgsc.bcm.edu	37	1	44084813	44084813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	PTPRF-232	NM_002840	exon27	c.T4586C	p.F1529S	TGGCCTTCCTACG	.	38	2	40	0	.	36	36	0	0	0
OR2G2	81470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247751788	247751788	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	OR2G2-68	NM_001001915	exon1	c.T127C	p.L43L	ACTATTTTGGGGA	.	319	87	178	0	.	0	0	0	0	0
AKAP3	10566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	4736579	4736579	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	AKAP3-292	NM_006422	exon4	c.C1489G	p.P497A	CTTCAGGGTACTC	.	47	10	48	0	.	0	0	0	0	0
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	46244916	46244916	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	ARID2-100	NM_152641	exon15	c.A3010T	p.S1004C	ACTGTCAGTCAAA	.	148	26	91	1	.	4	3	1	0	0
AQP2	359	broad.mit.edu	37	12	50344816	50344816	+	Missense_Mutation	SNP	A	A	C	rs104894331		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	AQP2-92	NM_000486	exon1	c.A203C	p.N68T	ACATCAACCCTGC	.	81	27	52	6	A|0.998;C|0.002	0	0	0	0	0
COL4A1	1282	ucsc.edu	37	13	110827563	110827563	+	Splice_Site	SNP	A	A	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	COL4A1-654	NM_001845	exon38	c.3198+2T>G	.	CTGGTTACCTTTT	.	75	2	73	0	.	0	0	0	0	0
HERC2	8924	broad.mit.edu	37	15	28370205	28370205	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	HERC2-234	NM_004667	exon84	c.A12937C	p.T4313P	CGAGGGTATGTGC	.	186	26	131	22	.	24	24	0	0	0
RYR3	6263	broad.mit.edu	37	15	33954438	33954438	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	RYR3-520	NM_001243996	exon35	c.C4707T	p.C1569C	GGTGTGCGCCCTG	.	23	3	16	0	.	0	0	0	0	0
HERPUD1	9709	broad.mit.edu	37	16	56974154	56974154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	HERPUD1-90	NM_014685	exon6	c.A902G	p.Y301C	TTATGTACCTGTA	.	197	5	131	1	.	0	0	0	0	0
FLII	2314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18149935	18149935	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	FLII-91	NM_002018	exon23	c.C3024T	p.F1008F	GCTCTCGAACTTC	.	52	13	19	0	.	215	139	76	0	0
FDXR	2232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	72860612	72860612	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	FDXR-226	NM_001258012	exon8	c.C921G	p.D307E	GATCTTGTCCTGG	.	88	7	50	0	.	0	0	0	0	0
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	122	1	137	1	.	0	0	0	0	0
NANOS3	342977	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	13988494	13988494	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	NANOS3-69	NM_001098622	exon1	c.A432G	p.R144R	CACCCGAAACTCG	.	36	8	23	0	.	0	0	0	0	0
NLRP7	199713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55452315	55452315	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	NLRP7-291	NM_001127255	exon3	c.G336A	p.S112S	TAACTCCGAGTCT	.	255	60	215	0	.	0	0	0	0	0
CCT4	10575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	62115531	62115531	+	Missense_Mutation	SNP	T	T	C	rs199542002		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	CCT4-92	NM_001256721	exon1	c.A112G	p.I38V	CGGAAATGTTGCT	.	50	23	40	0	T|0.998;C|0.002	86	21	65	0	0
ZSWIM2	151112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	187693177	187693177	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	ZSWIM2-93	NM_182521	exon9	c.A1436T	p.N479I	TTTGAATTTGAAT	.	43	7	43	0	.	0	0	0	0	0
TMC2	117532	broad.mit.edu;bcgsc.ca	37	20	2621849	2621849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	TMC2-93	NM_080751	exon20	c.A2573G	p.N858S	CCTCCAATTCTGC	.	199	6	109	0	.	0	0	0	0	0
CHD6	84181	broad.mit.edu	37	20	40033696	40033696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	CHD6-238	NM_032221	exon37	c.C7685T	p.T2562M	ACTGCCGTACCAC	.	237	5	186	2	.	15	15	0	0	0
HELZ2	85441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	62198513	62198513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	.	NM_001037335	exon7	c.G2198A	p.R733Q	CTCTGCCGCGCCA	.	156	9	91	0	.	3	3	0	0	0
INPP5J	27124	hgsc.bcm.edu;broad.mit.edu	37	22	31529986	31529986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	INPP5J-205	NM_001002837	exon13	c.C1498T	p.L500F	CTGGAGCTCCTTG	.	35	7	31	0	.	6	3	3	0	0
PRRT3	285368	hgsc.bcm.edu	37	3	9989480	9989480	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	PRRT3-90	NM_207351	exon4	c.C1377G	p.R459R	GCCCCAGCGTAGC	.	8	8	5	1	.	2	1	1	0	0
CHST2	9435	hgsc.bcm.edu	37	3	142839977	142839977	+	Missense_Mutation	SNP	G	G	A	rs185111962		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	CHST2-93	NM_004267	exon2	c.G319A	p.G107R	CGCCCAGGGCCGC	.	6	5	1	1	G|0.990;A|0.010	1	0	1	0	0
SULT1E1	6783	broad.mit.edu	37	4	70713465	70713465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	SULT1E1-91	NM_005420	exon6	c.A542G	p.K181R	TTTCCCTTTTCCC	.	126	3	98	0	.	0	0	0	0	0
RCHY1	25898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76439476	76439476	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	RCHY1-228	NM_001008925	exon1	c.A21G	p.E7E	GCCATCTTCCCGG	.	74	12	67	0	.	1	1	0	0	0
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	90052799	90052799	+	Missense_Mutation	SNP	G	G	A	rs200576500		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	GPR98-103	NM_032119	exon57	c.G11761A	p.A3921T	AAGGGCGCTGGGG	.	109	26	110	0	.	0	0	0	0	0
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137766032	137766032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	KDM3B-542	NM_016604	exon22	c.A4988G	p.Y1663C	GACTCTATGAGGA	.	191	27	142	0	.	21	13	8	0	0
C6orf211	79624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151789725	151789725	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	C6orf211-90	NM_024573	exon5	c.T806G	p.L269W	ACTTCTTGTTGTC	.	141	12	169	0	.	45	32	13	0	0
CDKN2A	1029	broad.mit.edu	37	9	21974720	21974720	+	Missense_Mutation	SNP	G	G	C	rs200382984		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	CDKN2A-23992	NM_058197	exon1	c.C107G	p.A36G	GGCAGCGCCCCCG	.	131	41	93	16	.	5	4	0	1	0
CTSL3P	392360	broad.mit.edu;bcgsc.ca	37	9	90401711	90401711	+	RNA	SNP	A	A	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	.	.	.	.	.	CTCTGCAGATGCT	.	119	6	139	0	.	0	0	0	0	0
ALAS2	212	hgsc.bcm.edu	37	X	55046923	55046923	+	Missense_Mutation	SNP	C	C	T	rs185504937		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	ALAS2-131	NM_000032	exon6	c.G653A	p.R218H	CCATGACGCTGCA	.	10	10	0	0	C|0.999;T|0.001	0	0	0	0	0
SCAF11	9169	broad.mit.edu	37	12	46320707	46320708	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	SCAF11-93	NM_004719	exon11	c.2776_2777del	p.926_926del	CTCCTTTCTCTCT	.	264	8	154	0	.	0	0	0	0	0
RXFP2	122042	broad.mit.edu	37	13	32376429	32376429	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	RXFP2-90	NM_130806	exon18	c.2152delA	p.K718fs	AAAATTAAAAAAA	.	171	5	160	0	.	0	0	0	0	0
RNMT	8731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	13731629	13731630	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	RNMT-90	NM_003799	exon3	c.113_114insT	p.A38fs	.	.	140	31	222	0	.	0	0	0	0	0
COL28A1	340267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	7412962	7412963	+	Missense_Mutation	DNP	CC	CC	AT	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	COL28A1		exon32	c.G2574A	p.D859Y	GTCATCCTTGCTG	.	116.0	25.0	92.0	0.0	.	0	0	0	0	0