Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 RERE 473 broad.mit.edu;bcgsc.ca 37 1 8420197 8420197 + Missense_Mutation SNP G G C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . RERE-515 NM_012102 exon19 c.C3370G p.P1124A GACTGGGGGTGTC . 18 5 29 0 . 0 0 0 0 0 AIM1L 55057 broad.mit.edu 37 1 26671979 26671979 + Silent SNP A A T novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . AIM1L-91 NM_001039775 exon2 c.T1170A p.P390P TTTTTTAGGGGGC . 56 4 76 0 . 0 0 0 0 0 COL11A1 1301 broad.mit.edu 37 1 103428308 103428308 + Silent SNP G G A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . COL11A1-586 NM_080629 exon39 c.C2961T p.T987T CTCACCGGTTGGT . 129 4 138 0 . 0 0 0 0 0 SLC6A17 388662 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 110709565 110709565 + Missense_Mutation SNP G G A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . SLC6A17-92 NM_001010898 exon2 c.G14A p.S5N AGAACAGCAAAGT . 45 11 45 0 . 0 0 0 0 0 ELF3 1999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 201984378 201984378 + Missense_Mutation SNP G G C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . ELF3-226 NM_001114309 exon9 c.G1043C p.R348P ATGGCCGGCGACT . 69 15 100 0 . 0 0 0 0 0 CAPN9 10753 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 230883264 230883264 + Missense_Mutation SNP C C G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . CAPN9-91 NM_006615 exon1 c.C22G p.P8A CGGGCCCCAGGGC . 150 45 151 1 . 0 0 0 0 0 C10orf54 64115 broad.mit.edu 37 10 73521465 73521465 + Missense_Mutation SNP C C T rs200235042 TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . C10orf54-515 NM_022153 exon2 c.G401A p.R134H AGGTTGCGCATGG . 56 3 58 0 C|0.999;T|0.000 0 0 0 0 0 C10orf62 414157 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 99349694 99349694 + Missense_Mutation SNP T T A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . C10orf62-90 NM_001009997 exon1 c.T40A p.S14T GAAACCTCTGAGT . 97 7 117 0 . 0 0 0 0 0 ST5 6764 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 8751785 8751785 + Missense_Mutation SNP G G A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . ST5-227 NM_005418 exon6 c.C1052T p.P351L TCTGGGGGTGGGC . 109 25 125 0 . 0 0 0 0 0 ZNF143 7702 hgsc.bcm.edu;broad.mit.edu 37 11 9519236 9519236 + Missense_Mutation SNP A A C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . ZNF143-90 NM_003442 exon10 c.A856C p.S286R TTAAAAAGTCACG . 79 6 93 2 . 0 0 0 0 0 OR8H3 390152 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 55890388 55890388 + Missense_Mutation SNP C C A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . OR8H3-70 NM_001005201 exon1 c.C540A p.D180E CTGTGACACTTCC . 340 19 377 1 . 0 0 0 0 0 AHNAK 79026 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 62290316 62290316 + Missense_Mutation SNP C C T novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . AHNAK-109 NM_001620 exon5 c.G11573A p.G3858D TTGGGACCTTTCA . 412 35 422 0 . 0 0 0 0 0 TUT1 64852 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 62346405 62346405 + Missense_Mutation SNP T T C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . TUT1-91 NM_022830 exon5 c.A902G p.D301G TGTGAATCTGGAG . 70 19 76 0 . 0 0 0 0 0 PC 5091 broad.mit.edu 37 11 66636400 66636400 + Silent SNP C C A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . PC-228 NM_000920 exon9 c.G939T p.L313L GTCCACCAGGAAC . 108 4 138 0 . 0 0 0 0 0 ARHGEF12 23365 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 120336044 120336044 + Missense_Mutation SNP G G T novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . ARHGEF12-661 NM_015313 exon28 c.G2712T p.K904N GAAAAAGGATTCT . 101 30 118 0 . 0 0 0 0 0 ESAM 90952 hgsc.bcm.edu 37 11 124623757 124623757 + Missense_Mutation SNP G G A rs200154876 alternate_allele TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . ESAM-90 NM_138961 exon7 c.C958T p.R320W GTGGCCGGAGGGC . 58 3 69 0 G|0.999;C|0.000 0 0 0 0 0 MLL2 8085 hgsc.bcm.edu;broad.mit.edu 37 12 49431830 49431830 + Silent SNP A A T novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . MLL2-612 NM_003482 exon34 c.T9309A p.A3103A ATCAGCAGCAGGG . 12 4 16 0 . 0 0 0 0 0 MCRS1 10445 hgsc.bcm.edu 37 12 49956786 49956786 + Missense_Mutation SNP G G C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . MCRS1-289 NM_001012300 exon7 c.C842G p.T281R TTACCTGTCTGGT . 28 2 19 0 . 0 0 0 0 0 ERBB3 2065 hgsc.bcm.edu;broad.mit.edu 37 12 56495577 56495577 + Missense_Mutation SNP C C T novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . ERBB3-1403 NM_001982 exon28 c.C3767T p.P1256L CAACTCCAGATGA . 126 9 91 1 . 0 0 0 0 0 MON2 23041 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 62972277 62972277 + Missense_Mutation SNP G G A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . MON2-514 NM_015026 exon31 c.G4567A p.D1523N AATATTGATGTCG . 47 9 46 0 . 0 0 0 0 0 NAP1L1 4673 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 76444427 76444427 + Missense_Mutation SNP C C T novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . NAP1L1-92 NM_004537 exon12 c.G943A p.D315N CAGCATCATCATC . 82 27 85 0 . 0 0 0 0 0 HMGB1 3146 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 13 31036826 31036826 + Missense_Mutation SNP G G A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . HMGB1-227 NM_002128 exon4 c.C320T p.S107F TACTCAGAGCAGA . 99 23 108 0 . 0 0 0 0 0 POSTN 10631 bcgsc.ca 37 13 38154768 38154768 + Missense_Mutation SNP T T C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . POSTN-516 NM_006475 exon11 c.A1459G p.I487V GGAATATGTGAAT . 287 9 309 2 . 0 0 0 0 0 ELF1 1997 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 41515309 41515309 + Missense_Mutation SNP G G A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . ELF1-227 NM_172373 exon8 c.C1004T p.P335L ACCCCTGGACTTG . 211 46 235 0 . 0 0 0 0 0 GPHN 10243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 67389425 67389425 + Missense_Mutation SNP G G C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . GPHN-228 NM_001024218 exon7 c.G499C p.D167H GCCATTGACCTTT . 221 63 255 0 . 0 0 0 0 0 ATG2B 55102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 96761860 96761860 + Missense_Mutation SNP A A T novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . ATG2B-93 NM_018036 exon35 c.T5177A p.L1726H GCAGAAAGACTTG . 112 36 134 0 . 0 0 0 0 0 NOMO2 283820 hgsc.bcm.edu 37 16 18532277 18532277 + Missense_Mutation SNP C C T novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . NOMO2-23 NM_173614 exon19 c.G2083A p.V695I CTAAGACCAAGGC . 337 82 271 0 . 0 0 0 0 0 ITGAX 3687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 31371300 31371300 + Silent SNP G G A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . ITGAX-229 NM_000887 exon7 c.G621A p.R207R ATTCAGGCGCAGC . 223 108 136 0 . 0 0 0 0 0 TK2 7084 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 66547680 66547680 + Missense_Mutation SNP T T A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . TK2-115 NM_004614 exon9 c.A653T p.E218V AGCCACTCCTCAT . 87 7 59 0 . 0 0 0 0 0 GSE1 23199 hgsc.bcm.edu 37 16 85690103 85690103 + Missense_Mutation SNP G G A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . . NM_014615 exon7 c.G1144A p.E382K GAGCGCGAGCGCG . 6 5 1 1 . 0 0 0 0 0 SLC13A5 284111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 6606332 6606332 + Missense_Mutation SNP T T G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . SLC13A5-90 NM_001143838 exon5 c.A673C p.T225P TCCCGGTCAGGGT . 141 39 123 0 . 0 0 0 0 0 PIK3R5 23533 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 17 8812455 8812455 + Missense_Mutation SNP A A G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . PIK3R5-1146 NM_001142633 exon3 c.T140C p.L47P CTGACCAGCTCCT . 26 4 36 0 . 0 0 0 0 0 KIAA0100 9703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 26948415 26948415 + Splice_Site SNP A A G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . KIAA0100-93 NM_014680 exon28 c.5059+2T>C . GGGCTGACCTGTG . 283 62 252 0 . 0 0 0 0 0 KRTAP1-1 81851 hgsc.bcm.edu 37 17 39197393 39197393 + Missense_Mutation SNP T T C rs201732142 TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . . NM_030967 exon1 c.A257G p.Y86C GTCTGGTAGCAGC . 100 11 77 2 . 0 0 0 0 0 MPO 4353 hgsc.bcm.edu 37 17 56356475 56356475 + Missense_Mutation SNP T T C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . MPO-156 NM_000250 exon6 c.A779G p.D260G TCGTGGTCCAACA . 27 3 19 0 . 0 0 0 0 0 NACA2 342538 ucsc.edu 37 17 59668318 59668318 + Missense_Mutation SNP C C T novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . NACA2-91 NM_199290 exon1 c.G224A p.R75K CGTGCCCTCTTTT . 532 1 390 1 . 0 0 0 0 0 HID1 283987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 72954436 72954436 + Missense_Mutation SNP C C G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . . NM_030630 exon11 c.G1378C p.D460H GCAGGTCGGCGTG . 48 5 28 0 . 0 0 0 0 0 ITGB4 3691 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 73752809 73752809 + Missense_Mutation SNP C C T novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . ITGB4-227 NM_000213 exon37 c.C4922T p.P1641L GCACTCCCAGTGC . 124 29 112 0 . 0 0 0 0 0 GADD45B 4616 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 2477582 2477582 + Missense_Mutation SNP T T A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . GADD45B-90 NM_015675 exon4 c.T466A p.S156T TACATCTCTCTTC . 39 13 27 0 . 0 0 0 0 0 S1PR4 8698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 3179456 3179456 + Silent SNP C C T novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . S1PR4-591 NM_003775 exon1 c.C666T p.L222L GGGCCTCTATGGG . 263 85 245 0 . 0 0 0 0 0 SLC7A10 56301 hgsc.bcm.edu 37 19 33706864 33706864 + Missense_Mutation SNP G G C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . SLC7A10-91 NM_019849 exon2 c.C167G p.S56W ATGCCCGAGCCGA . 18 2 12 0 . 0 0 0 0 0 BCAM 4059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 45322968 45322968 + Missense_Mutation SNP G G T novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . BCAM-91 NM_001013257 exon13 c.G1748T p.R583L AGCGGCGGGAGAA . 39 18 42 0 . 0 0 0 0 0 CCDC114 93233 broad.mit.edu 37 19 48800292 48800292 + Missense_Mutation SNP T T G rs190723331 alternate_allele TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . CCDC114-91 NM_144577 exon14 c.A1954C p.T652P GGCCGGTGCTGGA . 83 4 77 2 T|0.999;C|0.000 0 0 0 0 0 HRC 3270 hgsc.bcm.edu 37 19 49657763 49657763 + Missense_Mutation SNP T T A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . HRC-91 NM_002152 exon1 c.A732T p.E244D ATCTTCTTCATGG . 33 2 30 1 . 0 0 0 0 0 FAM161A 84140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 62066806 62066806 + Missense_Mutation SNP G G A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . FAM161A-136 NM_032180 exon3 c.C1333T p.H445Y ACTTGTGTTCTGA . 170 52 179 0 . 0 0 0 0 0 LMAN2L 81562 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 97373520 97373520 + Missense_Mutation SNP T T C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . LMAN2L-90 NM_001142292 exon8 c.A868G p.T290A CTGGGGTTCTCTC . 154 37 167 0 . 0 0 0 0 0 LRP2 4036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 170072853 170072853 + Silent SNP A A G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . LRP2-175 NM_004525 exon35 c.T5736C p.T1912T AAAGAGAGTTTTC . 105 41 102 0 . 0 0 0 0 0 SATB2 23314 hgsc.bcm.edu 37 2 200320598 200320598 + Missense_Mutation SNP C C G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . SATB2-91 NM_015265 exon3 c.G163C p.V55L CTCCCACGGCCTT . 7 5 1 1 . 0 0 0 0 0 PTPRA 5786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 3016279 3016279 + Missense_Mutation SNP G G T novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . PTPRA-227 NM_002836 exon25 c.G1969T p.D657Y TATGGAGATATTA . 26 12 40 0 . 0 0 0 0 0 GFRA4 64096 hgsc.bcm.edu 37 20 3641542 3641542 + Silent SNP G G A rs58634535 TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . GFRA4-90 NM_145762 exon2 c.C441T p.L147L CGGAGAGAGGCCC . 7 7 2 2 G|0.788;A|0.212 0 0 0 0 0 FRG1B 284802 broad.mit.edu 37 20 29625905 29625905 + RNA SNP T T C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . FRG1B-22 . . . . AATATCTTGGTAT . 133 6 163 1 . 0 0 0 0 0 PARD6B 84612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 49366607 49366607 + Missense_Mutation SNP T T C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . PARD6B-91 NM_032521 exon3 c.T701C p.M234T CAGACATGATGAT . 156 52 153 0 . 0 0 0 0 0 KRTAP10-11 386678 broad.mit.edu 37 21 46067216 46067216 + Missense_Mutation SNP G G A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . KRTAP10-11-91 NM_198692 exon1 c.G841A p.A281T CGCCCCGCAAGCT . 70 4 71 0 . 0 0 0 0 0 EMID1 129080 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 29627008 29627008 + Splice_Site SNP G G T novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . EMID1-90 NM_133455 exon6 c.466-1G>T . TCTTCAGATGACC . 103 27 85 0 . 0 0 0 0 0 SBF1 6305 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 50885659 50885659 + Missense_Mutation SNP G G C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . SBF1-90 NM_002972 exon41 c.C5594G p.T1865R CGACGCGTTGTCT . 56 13 53 0 . 0 0 0 0 0 GOLGA4 2803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 37340849 37340849 + Missense_Mutation SNP T T C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . GOLGA4-93 NM_001172713 exon10 c.T1139C p.L380P AACAGCTTGAACA . 78 41 72 0 . 0 0 0 0 0 MORC1 27136 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 108788509 108788509 + Missense_Mutation SNP T T A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . MORC1-98 NM_014429 exon9 c.A785T p.K262I AGATGTTTAGTTT . 156 42 119 0 . 0 0 0 0 0 PODXL2 50512 broad.mit.edu 37 3 127379564 127379564 + Silent SNP A A G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . PODXL2-91 NM_015720 exon3 c.A693G p.S231S CTCATCAGGTGTG . 173 3 134 0 . 0 0 0 0 0 TACC3 10460 hgsc.bcm.edu 37 4 1741439 1741439 + Missense_Mutation SNP C C G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . TACC3-91 NM_006342 exon11 c.C1952G p.T651R AGGCGACACAGGA . 9 2 9 0 . 0 0 0 0 0 DAPP1 27071 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 100787280 100787280 + Splice_Site SNP T T G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . DAPP1-93 NM_014395 exon8 c.774+2T>G . AATTGGTGAGAAT . 31 8 35 1 . 0 0 0 0 0 SLC30A5 64924 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 5 68399835 68399835 + Missense_Mutation SNP A A G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . SLC30A5-226 NM_024055 exon4 c.A320G p.K107R AAGACAAAAAGTT . 30 10 31 0 . 0 0 0 0 0 F2RL2 2151 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 75913735 75913735 + Missense_Mutation SNP A A G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . F2RL2-228 NM_004101 exon2 c.T797C p.L266S AATGCCAAGGAGA . 59 14 45 0 . 0 0 0 0 0 BHMT 635 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 78415082 78415082 + Missense_Mutation SNP T T C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . BHMT-91 NM_001713 exon3 c.T167C p.V56A TCCCAGTTCGCCA . 125 41 151 0 . 0 0 0 0 0 PCDHB3 56132 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140481178 140481178 + Silent SNP T T C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . PCDHB3-92 NM_018937 exon1 c.T945C p.Y315Y TAGTTATGAAGTC . 86 32 98 0 . 0 0 0 0 0 TENM2 57451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 167674296 167674296 + Missense_Mutation SNP C C A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . . NM_001122679 exon27 c.C6325A p.R2109S CTCTACCGCTATG . 185 57 182 0 . 0 0 0 0 0 PFN3 345456 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 176827191 176827191 + Missense_Mutation SNP T T C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . PFN3-90 NM_001029886 exon1 c.A387G p.I129M CCCGCGTATGAGT . 52 14 39 0 . 0 0 0 0 0 VARS2 57176 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 30893383 30893383 + Missense_Mutation SNP G G C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . VARS2-26 NM_001167734 exon28 c.G2938C p.G980R CCCCTGGGCACCC . 41 9 58 0 . 0 0 0 0 0 TTBK1 84630 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 43226956 43226956 + Silent SNP C C G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . TTBK1-353 NM_032538 exon11 c.C1197G p.V399V TGAAGTCTGGGAG . 104 26 100 0 . 0 0 0 0 0 GPR110 266977 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 46977043 46977043 + Missense_Mutation SNP G G A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . GPR110-71 NM_153840 exon11 c.C2128T p.P710S TGAGAGGGCACCC . 56 16 54 0 . 0 0 0 0 0 AIM1 202 hgsc.bcm.edu 37 6 106960432 106960432 + Silent SNP C C G rs146137130 byfrequency;alternate_allele TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . AIM1-139 NM_001624 exon1 c.C216G p.S72S TGCCTCCGCTGCG . 14 4 17 0 C|0.995;A|0.005 0 0 0 0 0 C6orf170 221322 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 121576521 121576521 + Silent SNP T T A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . C6orf170-92 NM_152730 exon17 c.A1971T p.V657V ACCCTCTACTGGA . 116 43 118 0 . 0 0 0 0 0 HIVEP2 3097 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 143091819 143091819 + Missense_Mutation SNP T T C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . HIVEP2-95 NM_006734 exon5 c.A4057G p.I1353V GAGAAATGCTTGT . 96 29 90 0 . 0 0 0 0 0 CADPS2 93664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 122269335 122269335 + Silent SNP A A G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . CADPS2-94 NM_001167940 exon4 c.T834C p.D278D CCGGCCATCAAGT . 33 6 35 0 . 0 0 0 0 0 NUP205 23165 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 135276257 135276257 + Missense_Mutation SNP T T G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . NUP205-207 NM_015135 exon11 c.T1533G p.I511M TTATATTCCTTAT . 130 46 150 0 . 0 0 0 0 0 RGS20 8601 bcgsc.ca 37 8 54764573 54764573 + Silent SNP T T C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . RGS20-227 NM_170587 exon1 c.T114C p.I38I AGACATTCACCAA . 109 34 121 0 . 0 0 0 0 0 PPAPDC2 403313 hgsc.bcm.edu 37 9 4662477 4662477 + Silent SNP C C A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . PPAPDC2-90 NM_203453 exon1 c.C102A p.G34G TGGCGGCGGCAGC . 10 7 4 1 . 0 0 0 0 0 FANCG 2189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 35077002 35077002 + Missense_Mutation SNP A A G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . FANCG-724 NM_004629 exon6 c.T743C p.V248A GTGTACACCTGGA . 106 28 129 1 . 0 0 0 0 0 TLE4 7091 broad.mit.edu 37 9 82267584 82267584 + Missense_Mutation SNP A A G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . TLE4-524 NM_007005 exon7 c.A467G p.Q156R GGCTCCAGCCCCC . 145 4 171 0 . 0 0 0 0 0 SMC2 10592 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 106862707 106862707 + Missense_Mutation SNP T T C novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . SMC2-210 NM_006444 exon7 c.T629C p.L210S AAAAATTAAAAGA . 118 35 142 0 . 0 0 0 0 0 PTGR1 22949 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 114359672 114359672 + Missense_Mutation SNP T T G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . PTGR1-90 NM_001146108 exon2 c.A31C p.K11Q AGTGCTTCTTCAG . 35 15 46 0 . 0 0 0 0 0 GAPVD1 26130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 128064468 128064468 + Missense_Mutation SNP C C T rs139510593 alternate_allele TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . GAPVD1-93 NM_015635 exon3 c.C392T p.T131I TTTACACAGTTTT . 243 75 260 1 C|1.000;G|0.000 0 0 0 0 0 DNM1 1759 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 131010868 131010868 + Missense_Mutation SNP G G A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . DNM1-228 . . . . GCCAGCGAGACCG . 84 26 90 0 . 0 0 0 0 0 CERCAM 51148 broad.mit.edu 37 9 131196837 131196837 + Missense_Mutation SNP C C T novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . CERCAM-69 NM_016174 exon11 c.C1480T p.R494C CCTCTGCGCCGCA . 76 3 79 0 . 0 0 0 0 0 EIF2S3 1968 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 24089815 24089815 + Missense_Mutation SNP C C T novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . EIF2S3-130 NM_001415 exon10 c.C1153T p.R385C GGTGTACGCACTG . 46 30 68 0 . 0 0 0 0 0 KDM6A 7403 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 44949021 44949021 + Nonsense_Mutation SNP G G A novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . KDM6A-2748 NM_021140 exon25 c.G3582A p.W1194X TTGGTGGCCCAAT . 37 29 47 0 . 0 0 0 0 0 ELF4 2000 hgsc.bcm.edu 37 X 129201251 129201251 + Silent SNP A A G novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . ELF4-659 NM_001421 exon9 c.T1437C p.A479A CAGTGGAGCCCCT . 47 3 46 0 . 0 0 0 0 0 IL9R 3581 hgsc.bcm.edu 37 X 155239602 155239602 + Missense_Mutation SNP G G A rs2228650 bycluster;bysubmitter TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . IL9R-40 NM_002186 exon9 c.G1094A p.R365H CAGCGCGTCCTTG . 76 5 76 2 G|1.000;|0.000 0 0 0 0 0 NPS 594857 broad.mit.edu;bcgsc.ca 37 10 129350829 129350829 + Frame_Shift_Del DEL T T - novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . NPS-22 NM_001030013 exon3 c.196delT p.F66fs AAGATGTTTGTGA . 339 47 413 0 . 0 0 0 0 0 HMGB1 3146 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 13 31036836 31036836 + Frame_Shift_Del DEL G G - novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . HMGB1-227 NM_002128 exon4 c.310delC p.L104fs . . 82 19 102 0 . 0 0 0 0 0 ZNF543 125919 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 57839185 57839185 + Frame_Shift_Del DEL G G - novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . ZNF543-92 NM_213598 exon4 c.355delG p.G119fs . . 69 15 69 0 . 0 0 0 0 0 RGS20 8601 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 54764571 54764572 + Frame_Shift_Del DEL AT AT - novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 AT AT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . RGS20-227 NM_170587 exon1 c.112_113del p.38_38del . . 119 38 126 0 . 0 0 0 0 0 RGS20 8601 hgsc.bcm.edu 37 8 54764571 54764573 + In_Frame_Del DEL ATT ATT - novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 ATT ATT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . RGS20-227 NM_170587 exon1 c.112_114del p.38_38del . . 121 21 127 0 . 0 0 0 0 0 ZFP14 57677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 36831480 36831481 + Missense_Mutation DNP GC GC AT novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 GC GC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . ZFP14 exon5 c.G1247A p.S416N TGAATGCTCTGGT . 164.0 53.0 142.0 0.0 . 0 0 0 0 0 FCGBP 8857 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 40395905 40395906 + Missense_Mutation DNP TC TC GT novel TCGA-BQ-5886-01A-11D-1589-08 TCGA-BQ-5886-11A-01D-1589-08 TC TC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 74be0abf-970a-477d-aa8c-7982e32b739f 9d0a86f4-1735-4a01-8c16-37b05d7bc326 . FCGBP exon15 c.G7491A p.N2498H CACGTTCTCCTGC . 414.0 50.0 397.0 1.0 . 0 0 0 0 0