Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CTRC	11330	hgsc.bcm.edu	37	1	15766798	15766798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CTRC-90	NM_007272	exon2	c.T43C	p.S15P	CCAGCCTCCAGCT	.	26	4	15	0	.	0	0	0	0	0
YBX1	4904	hgsc.bcm.edu	37	1	43166460	43166460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	YBX1-95	NM_004559	exon7	c.C749T	p.P250L	GCCCTCCTCGCCA	.	24	4	18	0	.	0	0	0	0	0
BCAN	63827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156628454	156628454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	BCAN-516	NM_021948	exon13	c.C2557A	p.L853M	CGCAATCTGCCGC	.	203	83	138	0	.	0	0	0	0	0
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	186072770	186072770	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	HMCN1-113	NM_031935	exon69	c.A10740G	p.G3580G	AGGAGGAGGAGAG	.	74	18	61	0	.	0	0	0	0	0
TRIM17	51127	ucsc.edu;bcgsc.ca	37	1	228596833	228596833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TRIM17-659	NM_001134855	exon6	c.C923A	p.S308Y	CCAAGAGATCCTG	.	133	47	94	1	.	1	0	1	0	0
EXOC8	149371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	231472695	231472695	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	EXOC8-91	NM_175876	exon1	c.A797T	p.N266I	TTAGCATTTTCGG	.	172	67	123	0	.	12	6	6	0	0
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	55626411	55626411	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	PCDH15-193	NM_001142763	exon28	c.C3723T	p.A1241A	TACATCGGCTTTG	.	118	31	71	0	.	0	0	0	0	0
TTC18	118491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	75037057	75037057	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TTC18-92	NM_145170	exon22	c.C2671T	p.Q891X	TAGTTTGAGAAAC	.	195	64	161	0	.	5	5	0	0	0
TTC18	118491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	75104981	75104981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TTC18-92	NM_145170	exon6	c.G451A	p.V151I	CTAATACTTTAAC	.	132	45	132	1	.	0	0	0	0	0
FAM22D	728130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	89118099	89118099	+	RNA	SNP	C	C	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	FAM22D-22	.	.	.	.	GTCACTCTCTGGG	.	312	52	284	0	.	10	7	3	0	0
WDR96	80217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105944865	105944865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	WDR96-95	NM_025145	exon16	c.C2050A	p.H684N	TCCCATGACCCTG	.	150	52	127	1	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu;ucsc.edu	37	11	1087972	1087972	+	Missense_Mutation	SNP	C	C	G	rs10902088	byfrequency;alternate_allele	TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MUC2-90	NM_002457	exon25	c.C3447G	p.N1149K	CATCAACGGCATC	.	17	9	18	1	C|0.712;T|0.288	0	0	0	0	0
LSP1	4046	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1907965	1907965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	LSP1-90	NM_001242932	exon9	c.G1105T	p.A369S	CAGACCGCTGGCC	.	106	44	147	0	.	0	0	0	0	0
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57080232	57080232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TNKS1BP1-91	NM_033396	exon5	c.C1930A	p.L644M	CAGGCAGTGCCTG	.	62	17	72	0	.	30	22	8	0	0
FAM86C1	55199	hgsc.bcm.edu	37	11	71502832	71502832	+	Nonsense_Mutation	SNP	T	T	A	rs3210434		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	FAM86C1-90	NM_001099653	exon3	c.T207A	p.Y69X	CAAGTATGCCCGG	.	61	4	58	1	.	16	16	0	0	0
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2760913	2760913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CACNA1C-34	NM_199460	exon34	c.G4197T	p.W1399C	GCTGTGGACCTTC	.	50	14	30	0	.	2	1	1	0	0
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	131439188	131439188	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	GPR133-191	NM_198827	exon2	c.G86C	p.R29T	ACTCCAGATCGCA	.	163	37	119	0	.	3	3	0	0	0
JPH4	84502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24040204	24040204	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	JPH4-92	NM_001146028	exon5	c.G1736C	p.G579A	TCAGGACCCCTCG	.	46	15	55	0	.	0	0	0	0	0
FBXO33	254170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	39868808	39868808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	FBXO33-658	NM_203301	exon4	c.C1580T	p.A527V	ATGACTGCATGCC	.	52	18	60	0	.	8	5	3	0	0
NUMB	8650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	73750966	73750966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	NUMB-1062	NM_001005744	exon10	c.C772T	p.P258S	CATGAGGATTGTT	.	210	62	186	0	.	69	41	28	0	0
CLMN	79789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	95660233	95660233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CLMN-90	NM_024734	exon12	c.G2793C	p.L931F	GTTCCTCAACTGA	.	100	19	88	0	.	9	7	2	0	0
AK7	122481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	96924426	96924426	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	AK7-228	NM_152327	exon12	c.A1234T	p.I412F	GAGGCGATTGTTG	.	70	20	43	0	.	0	0	0	0	0
CAPN3	825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42691695	42691695	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CAPN3-514	NM_000070	exon10	c.C1199G	p.S400C	GGATGTCCTATGA	.	63	23	104	1	.	0	0	0	0	0
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	45445603	45445603	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	DUOX1-142	NM_017434	exon27	c.G3450C	p.V1150V	TGTGGTGAATGTG	.	194	69	167	0	.	7	7	0	0	0
CILP	8483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65490142	65490142	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CILP-97	NM_003613	exon9	c.C2482T	p.L828L	CAGCCAGGCTTGC	.	98	31	118	0	.	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	3	3	0	0	T|0.007;C|0.993	4	0	4	0	0
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2817459	2817459	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SRRM2-93	NM_016333	exon11	c.T6930C	p.S2310S	TCTGAGTCTCACA	.	501	143	409	1	.	229	130	99	0	0
ANKS4B	257629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21261659	21261659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ANKS4B-92	NM_145865	exon2	c.G772A	p.G258S	GAGGACGGCAGTG	.	90	17	96	0	.	1	0	1	0	0
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	51174769	51174769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SALL1-98	NM_002968	exon2	c.C1364G	p.A455G	ACCTTCGCGCAGA	.	188	57	132	0	.	65	30	35	0	0
SLC6A2	6530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	55705980	55705980	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SLC6A2-526	NM_001172501	exon4	c.C537T	p.T179T	CCACACCTGGAAC	.	66	15	61	0	.	0	0	0	0	0
SPAG7	9552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4862852	4862852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SPAG7-91	NM_004890	exon7	c.G661A	p.E221K	ACTCTTCCCCACT	.	156	33	142	1	.	184	116	68	0	0
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10366488	10366488	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MYH4-102	NM_017533	exon10	c.C823T	p.R275X	TAACTCGGGACTT	.	103	20	69	0	.	0	0	0	0	0
PLD6	201164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17106274	17106274	+	Missense_Mutation	SNP	G	G	A	rs139543758	alternate_allele	TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	PLD6-90	NM_178836	exon2	c.C566T	p.T189M	TCCTCCGTGATGA	.	109	29	82	0	G|1.000;T|0.000	22	11	11	0	0
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18039921	18039921	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MYO15A-97	NM_016239	exon14	c.T4700G	p.L1567R	GCTGGCTCATCAC	.	71	19	61	0	.	0	0	0	0	0
KRTAP1-5	83895	hgsc.bcm.edu	37	17	39183083	39183083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	.	NM_031957	exon1	c.A325G	p.S109G	CTCCACTGCTGCC	.	48	5	31	1	.	2	2	0	0	0
KRTAP1-5	83895	hgsc.bcm.edu	37	17	39183129	39183129	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	.	NM_031957	exon1	c.T279C	p.T93T	ACAGCCAGTTCCG	.	51	4	40	0	.	0	0	0	0	0
NSF	4905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	44806264	44806264	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	NSF-91	NM_006178	exon17	c.G1872A	p.Q624Q	ATTACAGGCTCTT	.	118	40	148	0	.	32	23	9	0	0
USP32	84669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58348812	58348812	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	USP32-704	NM_032582	exon6	c.A602C	p.K201T	TAGCGTTTCTCAA	.	138	42	81	0	.	28	15	13	0	0
SPHK1	8877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74383269	74383269	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SPHK1-1107	NM_182965	exon6	c.C1015G	p.P339A	GTGGTGCCCGACG	.	37	8	24	0	.	17	13	4	0	0
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	51025752	51025752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	DCC-225	NM_005215	exon27	c.G3983T	p.S1328I	CACCAAGCAGAAC	.	96	53	142	0	.	0	0	0	0	0
SHC2	25759	hgsc.bcm.edu	37	19	438830	438830	+	Missense_Mutation	SNP	T	T	C	rs140148508		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SHC2-392	NM_012435	exon4	c.A608G	p.N203S	GCCTTGTTGGGGG	.	7	5	3	1	T|0.990;C|0.010	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	971962	971962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ARID3A-90	NM_005224	exon9	c.A1679G	p.N560S	GCAGCAACGCAGG	.	59	3	45	0	.	0	0	0	0	0
BTBD2	55643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1986877	1986877	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	BTBD2-92	NM_017797	exon8	c.G1368C	p.P456P	CTCCACCGGCTCC	.	62	12	59	0	.	172	114	57	1	0
SLC44A2	57153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10745556	10745556	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SLC44A2-91	NM_020428	exon11	c.G948C	p.L316F	CTGGTTGGCCTTT	.	206	58	166	0	.	0	0	0	0	0
DOCK6	57572	hgsc.bcm.edu	37	19	11326077	11326077	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	DOCK6-93	NM_020812	exon32	c.A4092G	p.S1364S	GCGGTCTGAGGTT	.	35	2	28	0	.	9	9	0	0	0
ZNF823	55552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11833231	11833231	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ZNF823-24	NM_001080493	exon4	c.C1118G	p.S373W	AAGCTCGAGCTAT	.	154	47	126	0	.	7	1	6	0	0
PODNL1	79883	hgsc.bcm.edu	37	19	14044017	14044017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	PODNL1-90	NM_024825	exon8	c.A1040G	p.N347S	AGCCCATTGCCAT	.	5	3	3	1	.	2	1	1	0	0
ZFP82	284406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36883897	36883897	+	Missense_Mutation	SNP	G	G	T	rs143115887	alternate_allele	TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ZFP82-91	NM_133466	exon5	c.C1345A	p.P449T	TATAAGGTTTCTC	.	170	54	164	0	.	4	3	1	0	0
SPTBN4	57731	hgsc.bcm.edu	37	19	41018832	41018832	+	Silent	SNP	A	A	G	rs814533		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SPTBN4-94	NM_020971	exon14	c.A2136G	p.R712R	GCGGCGAGCGTTG	.	2	2	0	0	A|0.806;G|0.194	0	0	0	0	0
CPT1C	126129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50200612	50200612	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CPT1C-92	NM_001199752	exon4	c.C171A	p.A57A	TCCTGCCAGCCCC	.	101	27	87	0	.	4	4	0	0	0
ZNF613	79898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52447643	52447643	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ZNF613-91	NM_001031721	exon6	c.T507A	p.H169Q	CAAGCATGAACAA	.	196	77	203	0	.	10	7	3	0	0
VN1R4	317703	hgsc.bcm.edu	37	19	53770133	53770133	+	Silent	SNP	G	G	A	rs77053773		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	VN1R4-92	NM_173857	exon1	c.C786T	p.P262P	ACTATTGGGATTA	.	60	4	60	0	G|0.250;A|0.750	0	0	0	0	0
MZF1	7593	hgsc.bcm.edu;broad.mit.edu	37	19	59082617	59082617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MZF1-91	NM_198055	exon2	c.T140C	p.F47S	CACCGGAAACGCA	.	38	3	28	0	.	7	7	0	0	0
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	15542368	15542368	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	NBAS-94	NM_015909	exon26	c.A2995C	p.I999L	TATAGATGCACTC	.	137	43	145	0	.	28	21	7	0	0
CENPA	1058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27016052	27016052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CENPA-181	NM_001809	exon4	c.T328C	p.Y110H	GACGCCTATCTCC	.	433	159	336	1	.	3	3	0	0	0
SLC5A6	8884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27427450	27427450	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SLC5A6-92	NM_021095	exon9	c.A884G	p.Y295C	ACTGCATAACAGG	.	104	35	55	0	.	0	0	0	0	0
TTC27	55622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	33036148	33036148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TTC27-90	NM_017735	exon17	c.G2056A	p.V686I	GGAGATGTTGCAA	.	130	51	111	0	.	25	13	12	0	0
PSME4	23198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	54125075	54125075	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	PSME4-275	NM_014614	exon31	c.G3538C	p.V1180L	GCAACACTCGGTC	.	162	44	132	0	.	28	19	9	0	0
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109392304	109392304	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	RANBP2-675	NM_006267	exon24	c.T8409C	p.I2803I	ATCCATTAGTTCA	.	113	46	113	0	.	44	27	17	0	0
TMEM87B	84910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	112863589	112863589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TMEM87B-90	NM_032824	exon16	c.A1461G	p.I487M	AGGAATAAAATTA	.	250	87	216	1	.	0	0	0	0	0
ORC2	4999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	201790562	201790562	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ORC2-209	NM_006190	exon13	c.G1144T	p.E382X	TACCTTCTTTAAA	.	168	49	130	0	.	0	0	0	0	0
UGT1A8	54576	broad.mit.edu	37	2	234526363	234526363	+	Missense_Mutation	SNP	A	A	G	rs150485330		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	UGT1A8-27	NM_019076	exon1	c.A10G	p.T4A	GCTCGCACAGGGT	.	76	4	71	1	A|1.000;G|0.000	1	0	1	0	0
ZNF341	84905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	32357951	32357951	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ZNF341-92	NM_032819	exon10	c.A1454C	p.E485A	TTCTGGAGCACAT	.	43	15	40	0	.	5	4	1	0	0
MORC3	23515	hgsc.bcm.edu	37	21	37692578	37692578	+	Missense_Mutation	SNP	C	C	A	rs202025634		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MORC3-92	NM_015358	exon1	c.C16A	p.P6T	CAGCCACCCCGCG	.	8	5	6	1	.	0	0	0	0	0
CECR6	27439	hgsc.bcm.edu	37	22	17600589	17600589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CECR6-90	NM_031890	exon1	c.G1429C	p.V477L	CGTCCACCAGGCA	.	5	2	1	0	.	0	0	0	0	0
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24447376	24447376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CABIN1-94	NM_001199281	exon8	c.C746T	p.A249V	GGCAAGCGCTGAT	.	58	25	68	0	.	9	3	6	0	0
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30050709	30050709	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	NF2-4696	NM_000268	exon5	c.A511T	p.K171X	CTTCCAAAAAGGG	.	145	73	209	0	.	0	0	0	0	0
KAT2B	8850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	20187858	20187858	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	KAT2B-228	NM_003884	exon14	c.C2055T	p.Y685Y	AGTTTACCCTGGA	.	146	70	209	0	.	29	5	24	0	0
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52439900	52439900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	BAP1-1032	NM_004656	exon10	c.T812C	p.I271T	GTCTGAATCAGCT	.	37	14	66	0	.	34	8	26	0	0
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	112324460	112324460	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CCDC80-92	NM_199511	exon8	c.T2657A	p.M886K	ATCACCATGGACC	.	51	20	76	0	.	59	46	13	0	0
MCF2L2	23101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183013205	183013205	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MCF2L2-293	NM_015078	exon13	c.C1558T	p.Q520X	TCACTTGCCTCTT	.	118	39	87	0	.	0	0	0	0	0
CLCN2	1181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184071937	184071937	+	Missense_Mutation	SNP	C	C	T	rs199539697		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CLCN2-90	NM_004366	exon15	c.G1673A	p.R558Q	TTGATTCGGATGA	.	90	26	66	0	C|1.000;T|0.000	7	5	2	0	0
TACC3	10460	hgsc.bcm.edu	37	4	1741486	1741486	+	Missense_Mutation	SNP	G	G	A	rs148906614		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TACC3-91	NM_006342	exon11	c.G1999A	p.G667R	CTCCACGGGAAGA	.	12	6	7	1	G|1.000;A|0.000	36	21	15	0	0
TRIM2	23321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	154249812	154249812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TRIM2-650	NM_015271	exon11	c.G2153A	p.S718N	GAAACAGCAGGAT	.	121	44	88	0	.	0	0	0	0	0
FAT1	2195	hgsc.bcm.edu;bcgsc.ca	37	4	187541246	187541246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	FAT1-34	NM_005245	exon10	c.C6494T	p.S2165L	TCCGCTGAAAAGG	.	55	5	58	0	.	44	44	0	0	0
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	71479648	71479648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MAP1B-155	NM_005909	exon3	c.C365A	p.T122N	TCAGCACCGAGGT	.	143	44	109	0	.	0	0	0	0	0
ARHGEF28	64283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	73165934	73165934	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	.	NM_001080479	exon21	c.T2466A	p.D822E	CAGTGATGCCCAG	.	185	67	168	0	.	56	28	28	0	0
SNCAIP	9627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	121787084	121787084	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SNCAIP-92	NM_005460	exon10	c.T2542G	p.S848A	CGGACCTCCACAA	.	96	31	104	0	.	2	2	0	0	0
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	150946163	150946163	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	FAT2-96	NM_001447	exon1	c.C2330G	p.P777R	TCCAAGGGAGCAG	.	69	25	68	0	.	0	0	0	0	0
ATP6V0E1	8992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	172410944	172410944	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ATP6V0E1-90	NM_003945	exon1	c.C81T	p.F27F	TTGGTTCATCCCT	.	261	93	228	0	.	388	233	155	0	0
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7562980	7562980	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	DSP-518	NM_004415	exon5	c.T693A	p.Y231X	CGACTATCGCTGG	.	117	82	97	0	.	2	1	1	0	0
HCRTR2	3062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	55142265	55142265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	HCRTR2-525	NM_001526	exon5	c.T850C	p.S284P	ACGAAGTCCCGGA	.	75	28	57	0	.	0	0	0	0	0
AMD1	262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	111213388	111213388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	AMD1-91	NM_001634	exon5	c.G452A	p.R151H	TGGGACGTATGAA	.	392	130	358	0	.	35	17	18	0	0
MTFR2	113115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	136562761	136562761	+	Missense_Mutation	SNP	C	C	T	rs150447506		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	.	NM_138419	exon5	c.G335A	p.R112Q	ACTAGTCGCAAAG	.	108	26	110	0	C|1.000;T|0.000	3	3	0	0	0
POU6F2	11281	hgsc.bcm.edu	37	7	39379265	39379265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	POU6F2-90	NM_007252	exon6	c.T536C	p.L179P	CCCAGCTCCAGCA	.	40	2	37	1	.	0	0	0	0	0
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48284203	48284203	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ABCA13-521	NM_152701	exon11	c.G1293A	p.L431L	AAGCTTGCTGCAA	.	54	21	47	0	.	0	0	0	0	0
CTAGE6	340307	hgsc.bcm.edu	37	7	143454218	143454218	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	.	NM_178561	exon1	c.A534C	p.E178D	CTCATCTTCTAGA	.	215	17	194	0	.	18	18	0	0	0
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	25766046	25766046	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	EBF2-26	NM_022659	exon7	c.T577G	p.C193G	GATTGCACTTGAG	.	65	23	56	1	.	0	0	0	0	0
ZBTB10	65986	hgsc.bcm.edu	37	8	81431606	81431606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ZBTB10-522	NM_001105539	exon6	c.T2459C	p.V820A	AAGGTGTAGATCA	.	41	3	38	0	.	23	23	0	0	0
NAPRT1	93100	hgsc.bcm.edu	37	8	144658981	144658981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	NAPRT1-91	NM_145201	exon6	c.G716T	p.G239V	TCCACCCCAGGGC	.	30	7	22	0	.	36	9	27	0	0
FOCAD	54914	bcgsc.ca	37	9	20758140	20758140	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	.	NM_017794	exon8	c.G444A	p.W148X	TTGCTGGCCAGTG	.	106	5	90	0	.	5	5	0	0	0
SPINK4	27290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	33246702	33246702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SPINK4-90	NM_014471	exon3	c.A191G	p.E64G	CGAATGAATGCCA	.	128	39	86	0	.	0	0	0	0	0
USP9Y	8287	hgsc.bcm.edu	37	Y	14847584	14847584	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	USP9Y-136	NM_004654	exon8	c.A696G	p.L232L	CACATTAAATGGG	.	26	2	47	0	.	2	2	0	0	0
USP9Y	8287	hgsc.bcm.edu	37	Y	14847619	14847619	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	USP9Y-136	NM_004654	exon8	c.A731C	p.N244T	TTTTTAATGGATC	.	23	2	39	0	.	0	0	0	0	0
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	200974516	200974517	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	KIF21B-96	NM_017596	exon5	c.651_652del	p.217_218del	.	.	142	48	96	0	.	0	0	0	0	0
EBF3	253738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	131755589	131755589	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	EBF3-91	NM_001005463	exon6	c.487delC	p.R163fs	.	.	181	50	142	0	.	0	0	0	0	0
SPON1	10418	broad.mit.edu	37	11	14276276	14276277	+	Splice_Site	DEL	GT	GT	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SPON1-1	.	.	.	.	TATGAGGTGTGTG	.	43	6	56	0	.	0	0	0	0	0
MALAT1	378938	hgsc.bcm.edu;bcgsc.ca	37	11	65271312	65271314	+	RNA	DEL	ATA	ATA	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	ATA	ATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	.	.	.	.	.	.	.	36	13	30	0	.	0	0	0	0	0
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24885007	24885007	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	NYNRIN-3	NM_025081	exon9	c.4052delC	p.T1351fs	.	.	152	48	120	0	.	0	0	0	0	0
IRX5	10265	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	54966812	54966813	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	IRX5-90	NM_001252197	exon2	c.652_653del	p.218_218del	.	.	225	71	172	0	.	0	0	0	0	0
PPM1F	9647	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	22285579	22285579	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	PPM1F-292	NM_014634	exon6	c.832delA	p.I278fs	.	.	90	41	109	0	.	0	0	0	0	0
SYN2	6854	broad.mit.edu	37	3	12046124	12046126	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SYN2-24	.	.	.	.	CCAGCAAGCGCCG	.	5	2	7	0	.	0	0	0	0	0
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	47161751	47161757	+	Frame_Shift_Del	DEL	GCTGTGG	GCTGTGG	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	GCTGTGG	GCTGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SETD2-1273	NM_014159	exon3	c.4369_4375del	p.1457_1459del	.	.	92	40	180	0	.	0	0	0	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	187541245	187541245	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	FAT1-34	NM_005245	exon10	c.6495delA	p.S2165fs	.	.	79	26	55	0	.	0	0	0	0	0
FAT1	2195	hgsc.bcm.edu	37	4	187541250	187541250	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	FAT1-34	NM_005245	exon10	c.6490delT	p.F2164fs	.	.	79	12	63	0	.	0	0	0	0	0
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	56015502	56015504	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	GTG	GTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	XKR4-92	NM_052898	exon1	c.454_456del	p.152_152del	.	.	80	22	57	0	.	0	0	0	0	0
TG	7038	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	133898849	133898849	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TG-145	NM_003235	exon9	c.1232delC	p.T411fs	.	.	368	113	258	0	.	0	0	0	0	0
TMEM206	55248	hgsc.bcm.edu	37	1	212588063	212588064	+	Splice_Site	INS	-	-	CTCCTGGTAGGATGTGGAGCG	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TMEM206-153	NM_001198862	exon2	c.36+1->CGCTCCACATCCTACCAGGAG	.	.	.	50	10	33	0	.	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	3297239	3297240	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MEFV-228	NM_000243	exon5	c.1364_1365insA	p.T455fs	.	.	146	45	96	0	.	0	0	0	0	0
GRAMD1A	57655	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	35500801	35500802	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	GRAMD1A-90	NM_020895	exon4	c.250_251insCA	p.P84fs	.	.	147	50	142	0	.	0	0	0	0	0
THUMPD2	80745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	39983057	39983058	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	THUMPD2-91	NM_025264	exon7	c.935_936insA	p.I312fs	.	.	98	32	101	0	.	0	0	0	0	0
RGPD2	729857	hgsc.bcm.edu	37	2	88081658	88081659	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	.	NM_001078170	exon20	c.4885_4886insT	p.K1629_T1630delinsX	.	.	532	88	417	0	.	0	0	0	0	0
CPXM1	56265	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	2775062	2775063	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CPXM1-94	NM_019609	exon14	c.1979_1980insT	p.Y660fs	.	.	73	28	66	0	.	0	0	0	0	0
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	86114798	86114799	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CADM2-228	NM_153184	exon9	c.1113_1114insT	p.L371fs	.	.	62	28	82	0	.	0	0	0	0	0