Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 ATP5F1 515 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 112002161 112002161 + Missense_Mutation SNP A A G rs201457142 TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . ATP5F1-90 NM_001688 exon6 c.A596G p.Y199C TGGACTATCATAT . 50 7 73 0 A|0.999;G|0.001 276 171 105 0 0 SLC16A1 6566 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 113460277 113460277 + Nonsense_Mutation SNP G G A novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . SLC16A1-514 NM_001166496 exon4 c.C751T p.Q251X GGAACTGATTAAT . 86 17 156 0 . 14 9 5 0 0 SNAPIN 23557 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 153631989 153631989 + Missense_Mutation SNP C C G novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . SNAPIN-68 NM_012437 exon3 c.C256G p.L86V AAGCTACTTAATG . 95 14 148 0 . 51 36 15 0 0 FRMPD2 143162 hgsc.bcm.edu 37 10 49365382 49365382 + Missense_Mutation SNP A A G novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . FRMPD2-153 NM_001018071 exon29 c.T3913C p.S1305P CTGTCGAAAGTCT . 180 23 195 0 . 1 0 1 0 0 C10orf71 118461 hgsc.bcm.edu 37 10 50532033 50532033 + Silent SNP G G A novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . C10orf71-90 NM_001135196 exon3 c.G1443A p.K481K AGAGAAGGAGCCC . 39 3 48 0 . 0 0 0 0 0 CCAR1 55749 hgsc.bcm.edu 37 10 70547739 70547739 + Nonsense_Mutation SNP T T G novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . CCAR1-159 NM_018237 exon22 c.T2936G p.L979X GGAAATTAACAGA . 40 2 51 0 . 50 50 0 0 0 PAPSS2 9060 bcgsc.ca 37 10 89474790 89474790 + Missense_Mutation SNP C C T novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . PAPSS2-493 NM_001015880 exon6 c.C688T p.P230S TTTGTGCCGGAAA . 70 5 81 0 . 26 26 0 0 0 HELLS 3070 hgsc.bcm.edu 37 10 96356840 96356840 + Missense_Mutation SNP G G T novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . HELLS-92 NM_018063 exon21 c.G2394T p.E798D TCTAGAGTTGTTG . 29 2 59 0 . 0 0 0 0 0 CAPRIN2 65981 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 30888129 30888129 + Silent SNP C C T rs145888176 TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . CAPRIN2-92 NM_023925 exon4 c.G582A p.A194A CTTTTGCGCTTTT . 91 5 171 0 C|1.000;T|0.000 0 0 0 0 0 RAN 5901 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 131359114 131359114 + Missense_Mutation SNP G G A novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . RAN-847 NM_006325 exon5 c.G271A p.D91N ATGTTTGATGTAA . 50 9 95 0 . 140 95 45 0 0 EP400 57634 hgsc.bcm.edu 37 12 132547147 132547147 + Silent SNP G G A novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . EP400-520 NM_015409 exon47 c.G8235A p.Q2745Q GCAGCAGCAGCAA . 132 7 90 1 . 9 9 0 0 0 PCNX 22990 broad.mit.edu 37 14 71476434 71476434 + Missense_Mutation SNP A A G novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . PCNX-91 NM_014982 exon9 c.A2713G p.N905D GCATCCAATATCT . 43 4 72 0 . 0 0 0 0 0 POMT2 29954 hgsc.bcm.edu;broad.mit.edu 37 14 77765102 77765102 + Silent SNP G G A rs186690580 TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . POMT2-91 NM_013382 exon8 c.C936T p.D312D GAAACCGTCACCA . 36 7 34 0 G|0.999;A|0.000 0 0 0 0 0 TJP1 7082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 30008820 30008820 + Silent SNP A A G novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . TJP1-95 NM_003257 exon23 c.T4197C p.S1399S CTTTGAAGAATAA . 54 7 81 0 . 0 0 0 0 0 TJP1 7082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 30065529 30065529 + Missense_Mutation SNP G G T novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . TJP1-95 NM_175610 exon3 c.C116A p.S39Y CCACCAGATATTG . 108 19 148 0 . 2 0 2 0 0 PRTG 283659 broad.mit.edu 37 15 55931963 55931963 + Missense_Mutation SNP G G A novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . PRTG-92 NM_173814 exon13 c.C2201T p.T734I GATGAGGTGTTAG . 157 5 134 0 . 0 0 0 0 0 ADAMTS7 11173 hgsc.bcm.edu 37 15 79058944 79058944 + Silent SNP A A T rs140097166 TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . ADAMTS7-226 NM_014272 exon19 c.T3309A p.A1103A GGGCGCAGCAGGA . 39 2 12 0 A|1.000;T|0.000 2 2 0 0 0 ZNF598 90850 hgsc.bcm.edu 37 16 2059674 2059674 + Missense_Mutation SNP T T C rs71384660 TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . ZNF598-432 NM_178167 exon2 c.A74G p.E25G CCGCCTTCCCGCT . 3 3 0 0 T|0.007;C|0.993 1 0 1 0 0 ZNF594 84622 hgsc.bcm.edu 37 17 5085361 5085361 + Missense_Mutation SNP C C T novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . ZNF594-71 NM_032530 exon2 c.G2191A p.A731T CTCCAGCATGCAG . 160 8 168 2 . 13 13 0 0 0 EFCAB3 146779 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 60484528 60484528 + Silent SNP T T C novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . EFCAB3-227 NM_001144933 exon10 c.T978C p.H326H TTTGCATTTCTTT . 74 7 92 0 . 0 0 0 0 0 C17orf80 55028 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 71231747 71231747 + Nonsense_Mutation SNP T T G novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . C17orf80-91 NM_001100621 exon3 c.T126G p.Y42X AGTTTATCAGTCC . 47 7 59 0 . 16 12 4 0 0 KLHL14 57565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 30350134 30350134 + Missense_Mutation SNP A A C novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . KLHL14-91 NM_020805 exon2 c.T421G p.Y141D AGAGGTACTCGAG . 268 50 216 0 . 0 0 0 0 0 ATP5A1 498 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 43671697 43671697 + Missense_Mutation SNP A A G novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . ATP5A1-90 NM_004046 exon3 c.T260C p.L87P TTCCTCAGCCCAT . 103 25 134 0 . 243 124 119 0 0 EPOR 2057 hgsc.bcm.edu 37 19 11491644 11491644 + Missense_Mutation SNP A A C novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . EPOR-523 NM_000121 exon6 c.T743G p.L248R GGGTCCAGGTCTA . 8 5 7 1 . 3 2 1 0 0 TSHZ3 57616 hgsc.bcm.edu 37 19 31770237 31770237 + Silent SNP A A G novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . TSHZ3-232 NM_020856 exon2 c.T462C p.S154S GCTGCTACTGCTG . 54 3 51 0 . 2020 14 2001 2 3 ANKRD27 84079 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 33132944 33132944 + Missense_Mutation SNP G G A novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . ANKRD27-95 NM_032139 exon10 c.C890T p.S297F CTTGGAGACTGTG . 199 53 214 0 . 0 0 0 0 0 CAPN12 147968 hgsc.bcm.edu 37 19 39226899 39226899 + Silent SNP G G A novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . CAPN12-91 NM_144691 exon12 c.C1434T p.A478A GCGGTCGGCGCGC . 3 3 0 0 . 3 0 3 0 0 LILRB3 11025 hgsc.bcm.edu 37 19 54725773 54725773 + Silent SNP T T C novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . LILRB3-93 NM_006864 exon4 c.A585G p.T195T ATAGCATGTGAAC . 20 7 12 2 . 4 2 2 0 0 LILRA5 353514 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 54819027 54819027 + Missense_Mutation SNP G G A novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . LILRA5-91 NM_021250 exon6 c.C719T p.A240V TTATCAGCTGCTC . 66 13 69 0 . 0 0 0 0 0 TLX2 3196 hgsc.bcm.edu 37 2 74742182 74742182 + Silent SNP C C G rs115897631 TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . TLX2-90 NM_016170 exon1 c.C249G p.V83V CCGCGTCCCTGCG . 6 5 1 1 C|0.992;G|0.008 0 0 0 0 0 SLC20A1 6574 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 113418129 113418129 + Silent SNP G G A novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . SLC20A1-92 NM_005415 exon9 c.G1773A p.L591L GGATCTGACACCG . 66 16 105 0 . 17 12 5 0 0 HAT1 8520 hgsc.bcm.edu 37 2 172848182 172848182 + Missense_Mutation SNP C C A novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . HAT1-290 NM_003642 exon11 c.C1176A p.S392R AATAAGCATGCAA . 55 3 77 0 . 34 34 0 0 0 ZNF142 7701 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 219510938 219510938 + Missense_Mutation SNP C C A novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . ZNF142-137 NM_001105537 exon7 c.G1407T p.K469N GTAGTGCTTCCAC . 139 32 134 0 . 1 0 1 0 0 AP1S3 130340 hgsc.bcm.edu 37 2 224640715 224640715 + Missense_Mutation SNP A A G novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . AP1S3-90 NM_001039569 exon3 c.T194C p.L65S AAATATAAACTAG . 38 2 33 0 . 0 0 0 0 0 USP40 55230 hgsc.bcm.edu 37 2 234399860 234399860 + Missense_Mutation SNP C C G novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . USP40-455 NM_018218 exon25 c.G2998C p.D1000H CTATGTCTCCCAA . 27 2 29 0 . 27 27 0 0 0 RBPJL 11317 hgsc.bcm.edu 37 20 43940524 43940524 + Missense_Mutation SNP G G T rs35472429 TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . RBPJL-227 NM_014276 exon5 c.G374T p.G125V ACATGGGACTGGA . 9 4 1 1 G|0.996;T|0.004 0 0 0 0 0 PTH1R 5745 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 46944260 46944260 + Missense_Mutation SNP T T C novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . PTH1R-522 NM_001184744 exon14 c.T1375C p.Y459H ATCATATACTGTT . 165 14 162 1 . 0 0 0 0 0 CCDC66 285331 hgsc.bcm.edu 37 3 56627106 56627106 + Missense_Mutation SNP G G C novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . CCDC66-135 NM_001141947 exon8 c.G1045C p.E349Q AAAATAGAGGAAA . 56 3 80 0 . 4 4 0 0 0 CCDC66 285331 hgsc.bcm.edu 37 3 56651517 56651517 + Missense_Mutation SNP T T G novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . CCDC66-135 NM_001141947 exon14 c.T2221G p.L741V CTTCATTTGGTAG . 38 2 51 0 . 1 1 0 0 0 MINA 84864 hgsc.bcm.edu 37 3 97673274 97673274 + Silent SNP G G T novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . MINA-91 NM_001261829 exon5 c.C747A p.A249A AGAGTGGGCCAGC . 68 8 50 1 . 0 0 0 0 0 RNF13 11342 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 149678840 149678840 + Silent SNP C C T novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . RNF13-227 NM_007282 exon11 c.C1095T p.V365V CGTGGTCCAGTTG . 90 19 122 1 . 76 51 25 0 0 EXOC1 55763 hgsc.bcm.edu 37 4 56765984 56765984 + Silent SNP A A G novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . EXOC1-950 NM_018261 exon17 c.A2271G p.Q757Q CAAACAAAAATAC . 50 5 90 0 . 36 36 0 0 0 INPP4B 8821 hgsc.bcm.edu 37 4 143044565 143044565 + Missense_Mutation SNP C C A novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . INPP4B-228 NM_003866 exon21 c.G1897T p.A633S ATCCAGCAAGCTG . 46 3 63 0 . 0 0 0 0 0 ZDHHC11 79844 hgsc.bcm.edu;broad.mit.edu 37 5 837562 837562 + Missense_Mutation SNP A A C novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . ZDHHC11-92 NM_024786 exon6 c.T818G p.I273S TTATTAATGAGAT . 109 12 145 0 . 0 0 0 0 0 ADAMTS16 170690 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 5235247 5235247 + Missense_Mutation SNP C C G novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . ADAMTS16-275 NM_139056 exon13 c.C1971G p.S657R CAACAGCAGACGA . 124 16 97 0 . 4 3 1 0 0 VCAN 1462 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 82850838 82850838 + Nonsense_Mutation SNP G G A novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . VCAN-238 NM_004385 exon12 c.G9716A p.W3239X TCCGTTGGACTGA . 79 13 89 0 . 187 170 17 0 0 HIST1H4B 8366 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 26027471 26027471 + Missense_Mutation SNP G G C novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . HIST1H4B-70 NM_003544 exon1 c.C10G p.R4G TGCCGCGACCAGA . 104 16 95 0 . 0 0 0 0 0 PKHD1 5314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 51924820 51924820 + Missense_Mutation SNP A A C rs143341567 alternate_allele TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . PKHD1-603 NM_170724 exon15 c.T1139G p.F380C GCCACAAAGAACC . 67 18 121 0 A|1.000;G|0.000 1 1 0 0 0 KCNQ5 56479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 73905126 73905126 + Missense_Mutation SNP A A G novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . KCNQ5-158 NM_001160133 exon15 c.A2845G p.K949E CATGTCAAACTGA . 112 17 122 0 . 0 0 0 0 0 FAM46A 55603 hgsc.bcm.edu 37 6 82461775 82461775 + Silent SNP G G T novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . FAM46A-90 NM_017633 exon2 c.C84A p.G28G GCCGCCGCCGAAG . 35 2 22 1 . 1 1 0 0 0 RARS2 57038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 88231239 88231239 + Missense_Mutation SNP A A T novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . RARS2-92 NM_020320 exon12 c.T978A p.D326E TGCAAGATCTCTG . 33 8 64 0 . 0 0 0 0 0 SEC63 11231 hgsc.bcm.edu 37 6 108227977 108227977 + Silent SNP A A G novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . SEC63-227 NM_007214 exon9 c.T738C p.L246L CATGATAAGACCT . 57 3 111 0 . 0 0 0 0 0 CYP51A1 1595 bcgsc.ca 37 7 91753108 91753108 + Missense_Mutation SNP C C A rs140702410 TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . CYP51A1-90 NM_000786 exon6 c.G830T p.R277L TGTCTGCGTTTCT . 33 9 83 0 C|0.999;A|0.000 5 5 0 0 0 PPP1R35 221908 hgsc.bcm.edu 37 7 100033305 100033305 + Silent SNP G G C novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . . NM_145030 exon3 c.C537G p.L179L CTCCCTGAGCGCG . 37 2 30 0 . 15 15 0 0 0 MTBP 27085 hgsc.bcm.edu 37 8 121528430 121528430 + Missense_Mutation SNP A A G novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . MTBP-228 NM_022045 exon18 c.A2245G p.R749G AGAAAAAGGTGAT . 39 2 24 0 . 0 0 0 0 0 EGFL7 51162 hgsc.bcm.edu 37 9 139566442 139566442 + Missense_Mutation SNP C C T rs200483435 TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . EGFL7-523 NM_016215 exon10 c.C701T p.P234L GGCTCCCGGACCC . 5 2 2 0 . 9 4 5 0 0 HUWE1 10075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 53589174 53589174 + Silent SNP C C T novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . HUWE1-280 NM_031407 exon54 c.G7236A p.E2412E CTCCTCCTCATCC . 57 16 59 0 . 32 8 24 0 0 NAP1L3 4675 ucsc.edu 37 X 92927724 92927724 + Missense_Mutation SNP C C T novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . NAP1L3-131 NM_004538 exon1 c.G580A p.E194K GGTTTTCTTCTTC . 72 3 151 1 . 12 9 3 0 0 NLGN4Y 22829 hgsc.bcm.edu 37 Y 16952767 16952767 + Silent SNP C C T novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . . NM_014893 exon6 c.C2076T p.A692A CTTAGCCTTTGCG . 5 5 3 1 . 1 0 1 0 0 S100PBP 64766 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 33292114 33292114 + Frame_Shift_Del DEL A A - novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . S100PBP-90 NM_001256121 exon3 c.414delA p.V138fs . . 70 16 100 0 . 0 0 0 0 0 GIT2 9815 broad.mit.edu;bcgsc.ca 37 12 110385121 110385127 + Frame_Shift_Del DEL TGGGAGA TGGGAGA - novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 TGGGAGA TGGGAGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . GIT2-226 NM_001135214 exon15 c.1575_1581del p.525_527del TCCCATTGGGAGA . 107 13 90 0 . 0 0 0 0 0 NUP50 10762 broad.mit.edu;bcgsc.ca 37 22 45574449 45574449 + Frame_Shift_Del DEL T T - novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . NUP50-68 NM_007172 exon5 c.671delT p.L224fs CTTCCCTTTTTGG . 81 11 107 0 . 0 0 0 0 0 MINA 84864 broad.mit.edu 37 3 97673276 97673276 + Frame_Shift_Del DEL C C - novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . MINA-91 NM_001261829 exon5 c.745delG p.A249fs AGTGGGCCAGCCC . 64 8 48 0 . 0 0 0 0 0 IGFBP1 3484 broad.mit.edu 37 7 45932569 45932569 + Frame_Shift_Del DEL C C - novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . IGFBP1-946 NM_000596 exon4 c.659delC p.S220fs AGACATCCATGGA . 115 9 98 0 . 0 0 0 0 0 CYP51A1 1595 broad.mit.edu;bcgsc.ca 37 7 91753101 91753107 + Frame_Shift_Del DEL CTGTCTG CTGTCTG - novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 CTGTCTG CTGTCTG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . CYP51A1-90 NM_000786 exon6 c.831_837del p.277_279del TTGAGACTGTCTG . 35 9 85 0 . 0 0 0 0 0 CEP78 84131 broad.mit.edu 37 9 80866948 80866948 + Frame_Shift_Del DEL A A - novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . CEP78-69 NM_001098802 exon9 c.1197delA p.A399fs ACGTGCAAAAAGA . 29 7 21 0 . 0 0 0 0 0 SRCAP 10847 broad.mit.edu 37 16 30736370 30736371 + Frame_Shift_Ins INS - - C novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . SRCAP-94 NM_006662 exon25 c.5625_5626insC p.Q1875fs ACGCCAGCCCCCC . 299 7 195 0 . 0 0 0 0 0 ZNF341 84905 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 32345059 32345060 + Frame_Shift_Ins INS - - C novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . ZNF341-92 NM_032819 exon6 c.847_848insC p.T283fs . . 414 128 318 0 . 0 0 0 0 0 TRIP6 7205 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 100465513 100465514 + Frame_Shift_Ins INS - - C novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . TRIP6-514 NM_003302 exon2 c.140_141insC p.C47fs . . 335 81 265 0 . 0 0 0 0 0 EEA1 8411 hgsc.bcm.edu 37 12 93196321 93196322 + Missense_Mutation DNP TT TT AG novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 TT TT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . EEA1 exon19 c.A2528C p.K843T TTCACTTTTTGTA . 16.0 2.0 31.0 0.0 . 0 0 0 0 0 NLRC4 58484 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 32475306 32475307 + Missense_Mutation DNP GC GC CT novel TCGA-B3-8121-01A-21D-2396-08 TCGA-B3-8121-10A-01D-2396-08 GC GC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef96a344-c871-4819-aada-dd93a5c7ca7d 5e9a09f1-d8de-4b72-99a8-ec2dad680376 . NLRC4 exon4 c.G1626A p.Q543E TTCTTGCTCAGTG . 106.0 21.0 163.0 0.0 . 0 0 0 0 0