Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
KDM1A	23028	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	23383993	23383993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KDM1A-206	NM_001009999	exon8	c.G1007A	p.R336Q	GTGGACGAGTTGC	.	113	6	135	0	.	13	13	0	0	0
GNL2	29889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38042060	38042060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	GNL2-91	NM_013285	exon9	c.G1007A	p.C336Y	ACGTTGCAAACTT	.	69	24	91	0	.	12	4	8	0	0
GLIS1	148979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53995548	53995548	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	GLIS1-91	NM_147193	exon4	c.G873A	p.P291P	CAGGTACGGCTTC	.	52	27	45	0	.	9	0	9	0	0
SAMD13	148418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	84768963	84768963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SAMD13-226	NM_001010971	exon2	c.G88T	p.V30L	GTCGGTGTAAAAA	.	53	22	69	0	.	0	0	0	0	0
CD58	965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	117078689	117078689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CD58-90	NM_001144822	exon3	c.A526G	p.K176E	CCATCTTAAAATA	.	48	16	56	0	.	27	12	15	0	0
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151381040	151381040	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	POGZ-93	NM_015100	exon14	c.C2079T	p.S693S	CCCTCGGGAAGCC	.	48	17	75	0	.	3	3	0	0	0
VHLL	391104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156268771	156268771	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	VHLL-69	NM_001004319	exon1	c.G210A	p.W70X	GTTGAGCCACACA	.	63	17	98	0	.	0	0	0	0	0
CRB1	23418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	197237545	197237545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CRB1-161	NM_001257966	exon1	c.G3T	p.M1I	GACCATGGCACTT	.	72	25	93	0	.	0	0	0	0	0
KLHL12	59349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	202866048	202866048	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KLHL12-522	NM_021633	exon7	c.C873T	p.S291S	CTGCTGGCTTCCA	.	116	47	106	0	.	10	8	2	0	0
C4BPB	725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207271520	207271520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	C4BPB-91	NM_001017365	exon6	c.C529A	p.Q177K	CAGGAGCAGCAAT	.	78	26	102	0	.	0	0	0	0	0
RPS6KC1	26750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	213251150	213251150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	RPS6KC1-417	NM_012424	exon3	c.T254C	p.I85T	AAGGAATAGTGTT	.	84	44	129	0	.	0	0	0	0	0
TLR5	7100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	223286361	223286361	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TLR5-525	NM_003268	exon6	c.C13T	p.L5L	GGTCCAGGTGGTC	.	154	57	210	0	.	3	3	0	0	0
PARG	8505	hgsc.bcm.edu;bcgsc.ca	37	10	51028292	51028292	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	PARG-948	NM_003631	exon17	c.T2695A	p.Y899N	TGAAATAAACCAC	.	77	22	87	0	.	3	3	0	0	0
MGEA5	10724	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103552626	103552626	+	Silent	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	MGEA5-93	NM_012215	exon12	c.T2145C	p.Y715Y	GATAGTATAAACT	.	76	31	56	1	.	10	7	3	0	0
SMC3	9126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	112361757	112361757	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SMC3-92	NM_005445	exon25	c.T2926A	p.L976I	ACAGAATTAAAGA	.	47	9	56	0	.	19	10	9	0	0
RAB11FIP2	22841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	119798692	119798692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	RAB11FIP2-90	NM_014904	exon3	c.G1056T	p.E352D	CCTTTTCTCTCTT	.	57	17	67	0	.	2	1	1	0	0
OR51E1	143503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4674486	4674486	+	Missense_Mutation	SNP	G	G	A	rs148787592		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	OR51E1-114	NM_152430	exon2	c.G730A	p.V244I	ACTTGCGTCTCTC	.	77	26	99	0	G|1.000;A|0.000	0	0	0	0	0
ZDHHC5	25921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57466844	57466844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ZDHHC5-226	NM_015457	exon11	c.G1936A	p.V646I	CCTGGTGTCTCTG	.	33	13	44	0	.	74	36	38	0	0
ARL2	402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64789247	64789247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ARL2-181	NM_001667	exon5	c.G475A	p.A159T	TGCAGCGCCGTCA	.	25	12	49	0	.	404	203	201	0	0
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117869943	117869943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	IL10RA-91	NM_001558	exon7	c.G1324T	p.A442S	GCTGTGGCATTCC	.	63	18	107	0	.	3	3	0	0	0
DOCK9	23348	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99481633	99481633	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	DOCK9-90	.	.	.	.	GGGCGTGCTGGCA	.	110	35	151	0	.	4	0	4	0	0
FBXO33	254170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	39871674	39871674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	FBXO33-658	NM_203301	exon2	c.T641C	p.L214P	TGTTGTAGAACAC	.	20	6	34	0	.	0	0	0	0	0
L2HGDH	79944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	50713788	50713788	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	L2HGDH-92	NM_024884	exon10	c.A1380G	p.R460R	TTCAAATCTTTGT	.	103	38	110	0	.	1	1	0	0	0
MAP3K9	4293	broad.mit.edu	37	14	71199898	71199898	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	MAP3K9-546	NM_033141	exon12	c.A2230C	p.T744P	GAGGGGTACTCGT	.	18	5	43	3	.	0	0	0	0	0
VRTN	55237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	74824279	74824279	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	VRTN-155	NM_018228	exon2	c.T793A	p.S265T	CCACTCTCATCGC	.	47	18	107	0	.	0	0	0	0	0
GALC	2581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	88412007	88412007	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	GALC-90	NM_000153	exon14	c.T1560G	p.I520M	GTCTTCAATATTT	.	39	10	36	0	.	4	4	0	0	0
CALM1	801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	90870815	90870815	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CALM1-90	NM_006888	exon5	c.C378T	p.I126I	AATGATCAGAGAA	.	149	38	173	0	.	287	173	114	0	0
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	25981205	25981205	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ATP10A-139	NM_024490	exon3	c.C738T	p.C246C	TCACATGCAGCCG	.	99	38	103	0	.	0	0	0	0	0
SECISBP2L	9728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	49293279	49293279	+	Silent	SNP	A	A	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SECISBP2L-136	NM_001193489	exon15	c.T2043G	p.V681V	ACAAAGAACCTGA	.	42	16	20	0	.	1	1	0	0	0
ARL2BP	23568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57283687	57283687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ARL2BP-90	NM_012106	exon4	c.G216T	p.L72F	TTCTTTGGTAGAA	.	50	7	50	0	.	1	0	1	0	0
KCTD11	147040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7256621	7256621	+	Silent	SNP	C	C	T	rs79616684		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KCTD11-90	NM_001002914	exon1	c.C360T	p.D120D	GGTGGACACCTTC	.	62	17	68	0	C|0.500;T|0.500	42	34	8	0	0
PEX12	5193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33904481	33904481	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	PEX12-90	NM_000286	exon2	c.T256G	p.F86V	CGTAAAAGTTTTC	.	37	11	27	0	.	4	1	3	0	0
CDC6	990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38447445	38447445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CDC6-662	NM_001254	exon3	c.A314G	p.K105R	CAATTAAGTCTCC	.	120	14	77	0	.	0	0	0	0	0
HDAC5	10014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42160014	42160014	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	HDAC5-227	NM_001015053	exon20	c.C2549G	p.A850G	GTGATGGCTACAG	.	176	51	129	0	.	43	32	11	0	0
USP32	84669	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58288852	58288852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	USP32-704	NM_032582	exon20	c.G2203T	p.G735C	TTAGACCTGTGGC	.	221	70	189	1	.	1	1	0	0	0
NOL11	25926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	65739904	65739904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	NOL11-90	NM_015462	exon18	c.G2089A	p.E697K	TTTCGGGAGCTAC	.	36	9	17	0	.	85	55	30	0	0
LGALS3BP	3959	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	76967786	76967786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	LGALS3BP-515	NM_005567	exon6	c.A1630G	p.I544V	TGGGAATCGCAGC	.	62	8	88	1	.	2323	1545	776	1	1
THOC1	9984	bcgsc.ca	37	18	254346	254346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	THOC1-91	NM_005131	exon8	c.T530C	p.L177S	CTCTGCAAGTTAA	.	18	4	19	0	.	0	0	0	0	0
TTR	7276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29178601	29178601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TTR-91	NM_000371	exon4	c.A407G	p.Y136C	ACTCCTATTCCAC	.	78	21	85	0	.	0	0	0	0	0
C18orf21	83608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	33558958	33558958	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	C18orf21-90	NM_031446	exon5	c.C652G	p.L218V	GGTGGACTTTTAA	.	54	17	57	0	.	25	16	9	0	0
MYO5B	4645	broad.mit.edu	37	18	47511190	47511190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	MYO5B-72	NM_001080467	exon8	c.G844T	p.A282S	CCTCTGCACTTGC	.	124	5	112	0	.	0	0	0	0	0
TSHZ1	10194	hgsc.bcm.edu;bcgsc.ca	37	18	72999468	72999468	+	Silent	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TSHZ1-90	NM_005786	exon2	c.C1971A	p.A657A	GAAGGCCAAAAAG	.	102	35	136	0	.	2	2	0	0	0
SUGP1	57794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19427332	19427332	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SUGP1-91	NM_172231	exon2	c.G105C	p.Q35H	CTCTTCCTGGTGA	.	99	30	124	0	.	7	7	0	0	0
ZNF569	148266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	37904781	37904781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ZNF569-154	NM_152484	exon6	c.A779G	p.H260R	CTTTGATGTCTAA	.	17	9	16	0	.	2	0	2	0	0
RABAC1	10567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42461228	42461228	+	Silent	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	RABAC1-90	NM_006423	exon4	c.C411A	p.G137G	GGAGATGCCTCCA	.	143	54	281	0	.	325	189	134	0	2
CCDC155	147872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49920441	49920441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CCDC155-69	NM_144688	exon19	c.G1465A	p.A489T	CAGCAAGCCCTGG	.	42	19	60	0	.	0	0	0	0	0
AP2A1	160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50285918	50285918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	AP2A1-92	NM_130787	exon4	c.A410G	p.N137S	TCGCCAACGTGGG	.	30	12	51	0	.	27	9	18	0	0
ZNF880	400713	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52887363	52887363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	.	NM_001145434	exon4	c.C530T	p.A177V	AAAAAGCACAAAT	.	52	14	57	1	.	0	0	0	0	0
TRIB2	28951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	12858616	12858616	+	Silent	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TRIB2-333	NM_021643	exon1	c.C183A	p.I61I	TTGTATCGGGAAA	.	73	29	97	0	.	4	3	1	0	0
IL1RL2	8808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	102805602	102805602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	IL1RL2-92	NM_003854	exon3	c.G125A	p.C42Y	TTAATTGTACATT	.	49	18	38	0	.	0	0	0	0	0
R3HDM1	23518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	136393707	136393707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	R3HDM1-91	NM_015361	exon11	c.G857T	p.R286I	AAGAAAGAGAAGA	.	84	26	141	0	.	0	0	0	0	0
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166848746	166848746	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SCN1A-147	NM_001165963	exon26	c.T5039A	p.V1680D	AACATGACTAGGA	.	268	89	314	0	.	0	0	0	0	0
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178098806	178098806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	NFE2L2-90	NM_006164	exon2	c.C239A	p.T80K	TCACCTGTCTCTT	.	65	20	63	0	.	19	13	6	0	0
CHPF	79586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220404816	220404816	+	Silent	SNP	A	A	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CHPF-90	NM_024536	exon4	c.T1617A	p.A539A	TGCCGCAGCATCA	.	18	9	51	0	.	143	96	46	0	1
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238259816	238259816	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	COL6A3-526	NM_004369	exon27	c.G6773C	p.G2258A	GGAGCACCAGCGG	.	93	28	90	0	.	0	0	0	0	0
ILKAP	80895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	239093869	239093869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ILKAP-118	NM_030768	exon6	c.T485C	p.F162S	GCAGCAAATTTTG	.	125	33	103	0	.	34	19	15	0	0
JAG1	182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	10639160	10639160	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	JAG1-1273	NM_000214	exon4	c.A650C	p.N217T	GTTTTGTTGCCAT	.	58	25	89	0	.	2	1	1	0	0
LAMA5	3911	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	60908164	60908164	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	LAMA5-93	NM_005560	exon26	c.C3264T	p.I1088I	GCAGGTGATCAGT	.	15	8	41	0	.	3	3	0	0	0
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62851117	62851117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	MYT1-704	NM_004535	exon13	c.A2023G	p.K675E	ATGCACAAACACC	.	174	67	191	0	.	0	0	0	0	0
DYRK1A	1859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	38884349	38884349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	DYRK1A-792	NM_001396	exon11	c.G1807A	p.G603S	CACCATGGTAACA	.	129	45	154	0	.	5	1	4	0	0
ABHD5	51099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	43744053	43744053	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ABHD5-91	NM_016006	exon3	c.T480C	p.A160A	GGCTGCTGCTTAC	.	199	46	188	0	.	5	2	3	0	0
LMOD3	56203	broad.mit.edu	37	3	69168646	69168646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	LMOD3-23	NM_198271	exon2	c.T860C	p.F287S	AAACTGAATGTTT	.	81	3	121	0	.	0	0	0	0	0
TRMT10C	54931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	101284214	101284214	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	.	NM_017819	exon2	c.C589T	p.Q197X	GGTGCCCAGGCCA	.	50	16	42	0	.	22	15	7	0	0
KIAA1407	57577	broad.mit.edu	37	3	113684200	113684200	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KIAA1407-92	NM_020817	exon17	c.C2613T	p.I871I	CCAGAGGATCCTC	.	16	3	11	0	.	1	1	0	0	0
MUC4	4585	bcgsc.ca	37	3	195513470	195513470	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	MUC4-90	NM_018406	exon2	c.C4981G	p.H1661D	TGGCGTGACCTGT	.	1145	39	967	22	.	0	0	0	0	0
LRCH3	84859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	197592302	197592302	+	Missense_Mutation	SNP	C	C	G	rs201375313	alternate_allele	TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	LRCH3-91	NM_032773	exon16	c.C1725G	p.D575E	TGATGACAGACCT	.	154	41	125	0	C|0.999;T|0.001	0	0	0	0	0
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	44450334	44450334	+	Silent	SNP	A	A	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KCTD8-92	NM_198353	exon1	c.T207A	p.T69T	GGCCAAAGTACTG	.	33	16	44	0	.	0	0	0	0	0
AFF1	4299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	88053423	88053423	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	AFF1-289	NM_001166693	exon19	c.C3174T	p.C1058C	TCATAGCATGCGT	.	118	34	131	0	.	0	0	0	0	0
ADH4	127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	100057629	100057629	+	Silent	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ADH4-228	NM_000670	exon5	c.C570A	p.I190I	ATTGTTGATTGCA	.	45	14	50	0	.	0	0	0	0	0
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123109188	123109188	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KIAA1109-80	NM_015312	exon7	c.A766T	p.N256Y	CTTGAAAATGTTC	.	19	6	34	0	.	0	0	0	0	0
SMARCA5	8467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	144457751	144457751	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SMARCA5-227	NM_003601	exon11	c.A1415C	p.Y472S	CACCTTATACAAC	.	327	128	351	0	.	8	5	3	0	0
FAM149A	25854	broad.mit.edu;bcgsc.ca	37	4	187093141	187093141	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	FAM149A-90	NM_001006655	exon13	c.A1449T	p.X483C	ATCTTGAAACCAC	.	63	6	81	0	.	104	95	9	0	0
CDH6	1004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	31294229	31294229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CDH6-159	NM_004932	exon3	c.C389A	p.A130D	CTCAAGCTATAAA	.	68	21	72	0	.	16	7	9	0	0
DTWD2	285605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	118183873	118183873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	DTWD2-90	NM_173666	exon5	c.G638A	p.R213Q	TGCATCCGAATTA	.	136	41	136	0	.	1	1	0	0	0
FAM13B	51306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137346798	137346798	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	.	NM_001101800	exon6	c.G589C	p.V197L	TGCTCACTATTTC	.	31	18	22	0	.	0	0	0	0	0
KIAA0141	9812	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141316790	141316790	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KIAA0141-91	NM_001142603	exon11	c.A1177C	p.I393L	CTTGGAATTTGCT	.	88	30	74	1	.	16	10	6	0	0
FAM71B	153745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156590131	156590131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	FAM71B-96	NM_130899	exon2	c.C1145T	p.T382I	TTGCTGGTCGTAA	.	51	11	30	0	.	0	0	0	0	0
JARID2	3720	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	15512476	15512476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	JARID2-228	NM_004973	exon14	c.T2990C	p.V997A	TCAAGGTGCACAG	.	124	39	152	2	.	6	3	3	0	0
EHMT2	10919	hgsc.bcm.edu;bcgsc.ca	37	6	31852467	31852467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	EHMT2-91	NM_006709	exon20	c.C2558T	p.T853I	AGGGGGGTGTCCC	.	68	28	104	0	.	13	13	0	0	0
TNXB	7148	broad.mit.edu	37	6	32029470	32029470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TNXB-90	NM_019105	exon21	c.C7196A	p.T2399K	GGTTCTGTGGGGC	.	22	3	23	0	.	2	2	0	0	0
C6orf222	389384	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	36294405	36294405	+	Silent	SNP	G	G	C	rs140796295	alternate_allele	TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	C6orf222-93	NM_001010903	exon5	c.C918G	p.S306S	CTCCTCGGAGCCG	.	65	23	85	0	G|1.000;A|0.000	0	0	0	0	0
PTCRA	171558	broad.mit.edu	37	6	42893185	42893185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	PTCRA-92	NM_001243168	exon4	c.G656A	p.G219E	CTGGGGGACGAGA	.	3	3	9	0	.	0	0	0	0	0
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43184050	43184050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CUL9-529	NM_015089	exon31	c.T6091C	p.S2031P	GCTCATTCCCACT	.	58	18	97	0	.	16	5	11	0	0
COL10A1	1300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	116441541	116441541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	COL10A1-90	NM_000493	exon3	c.C1738A	p.Q580K	AATGCTGTTGCCT	.	78	21	76	0	.	0	0	0	0	0
SCAF8	22828	bcgsc.ca	37	6	155143508	155143508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SCAF8-91	NM_014892	exon16	c.G1891T	p.A631S	ACCCAGGCAGAGG	.	78	4	83	0	.	1	1	0	0	0
SBDS	51119	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	66456178	66456178	+	Silent	SNP	G	G	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SBDS-523	NM_016038	exon4	c.C570G	p.L190L	TGGCTTGAGCTTT	.	95	20	77	0	.	109	83	26	0	0
CLDN12	9069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	90042282	90042282	+	Missense_Mutation	SNP	A	A	T	rs76988207	byfrequency;alternate_allele	TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CLDN12-90	NM_012129	exon3	c.A292T	p.M98L	ATCGCCATGGGTG	.	267	55	196	1	A|0.998;G|0.002	6	6	0	0	0
ZSCAN25	221785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99219063	99219063	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	.	NM_145115	exon5	c.T455A	p.I152N	CAGGCATCCAGCT	.	169	66	108	0	.	11	9	2	0	0
AASS	10157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	121769482	121769482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	AASS-92	NM_005763	exon3	c.C320T	p.A107V	AAAAATGCATAAG	.	50	18	47	0	.	0	0	0	0	0
VIPR2	7434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	158828654	158828654	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	VIPR2-91	NM_003382	exon8	c.A798G	p.L266L	GTCTTCTAAGTAG	.	144	68	59	0	.	0	0	0	0	0
MSR1	4481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	16021617	16021617	+	Silent	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	MSR1-91	NM_138715	exon5	c.T774C	p.D258D	TTCCCAATCTTTC	.	55	13	77	0	.	0	0	0	0	0
EYA1	2138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	72182014	72182014	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	EYA1-652	NM_000503	exon11	c.C1011T	p.H337H	CAAGGAGTGGAAA	.	110	33	102	0	.	0	0	0	0	0
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	124989660	124989660	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	FER1L6-100	NM_001039112	exon10	c.C874T	p.R292X	TAGGGGCGAACCA	.	124	46	122	0	.	0	0	0	0	0
GLDC	2731	broad.mit.edu	37	9	6536187	6536187	+	Silent	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	GLDC-92	NM_000170	exon23	c.G2715T	p.V905V	GGGCTCCACCATG	.	135	5	114	1	.	230	230	0	0	0
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	79325026	79325026	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	PRUNE2-157	NM_015225	exon8	c.C2164T	p.Q722X	CAGGCTGACCAAA	.	69	36	98	0	.	0	0	0	0	0
WNK2	65268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	96079890	96079890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	WNK2-765	NM_006648	exon28	c.C6605T	p.P2202L	CCGCCCCGACCCT	.	18	5	60	0	.	15	4	11	0	0
TDRD7	23424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	100227199	100227199	+	Silent	SNP	T	T	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TDRD7-93	NM_014290	exon8	c.T1518G	p.P506P	GAATCCTAAGATC	.	126	27	134	0	.	8	7	1	0	0
ZBTB6	10773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	125673886	125673886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ZBTB6-90	NM_006626	exon2	c.A466G	p.N156D	CAGAATTTTCATC	.	24	6	21	0	.	0	0	0	0	0
NDOR1	27158	broad.mit.edu	37	9	140110791	140110791	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	NDOR1-90	NM_001144026	exon14	c.C1744G	p.L582V	GGTGGACTCTGCA	.	25	5	35	0	.	7	4	3	0	0
SLC35A2	7355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48762075	48762075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SLC35A2-193	NM_001042498	exon4	c.C1111T	p.P371S	GCTGCGGTGGTGG	.	23	13	44	0	.	13	0	13	0	0
LPAR4	2846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	78011381	78011381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	LPAR4-133	NM_005296	exon2	c.C1015T	p.P339S	GAAACACCTTTGA	.	66	47	64	0	.	0	0	0	0	0
ERRFI1	54206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	8074134	8074135	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ERRFI1-91	NM_018948	exon4	c.524_525del	p.175_175del	.	.	99	41	79	0	.	0	0	0	0	0
PARG	8505	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	51028288	51028288	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	PARG-948	NM_003631	exon17	c.2699delT	p.F900fs	.	.	75	21	89	0	.	0	0	0	0	0
TET1	80312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	70446307	70446307	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TET1-663	NM_030625	exon11	c.5247delG	p.Q1749fs	.	.	136	44	130	0	.	0	0	0	0	0
TAS2R14	50840	broad.mit.edu;bcgsc.ca	37	12	11091488	11091488	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TAS2R14-90	NM_023922	exon1	c.319delT	p.Y107fs	GAAAATAAAAAGT	.	13	5	29	0	.	0	0	0	0	0
NAB2	4665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57486863	57486863	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	NAB2-92	NM_005967	exon5	c.1161delC	p.H387fs	.	.	54	19	61	0	.	0	0	0	0	0
SLC25A15	10166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	41381598	41381598	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SLC25A15-226	NM_014252	exon5	c.621delA	p.L207fs	.	.	63	29	69	0	.	0	0	0	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724899	38724899	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CLEC14A-94	NM_175060	exon1	c.329delT	p.L110fs	CCCCGCAAAGGCT	.	6	2	11	0	.	0	0	0	0	0
ADAM20	8748	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	70990728	70990729	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ADAM20-226	NM_003814	exon2	c.896_897del	p.299_299del	.	.	44	13	42	0	.	0	0	0	0	0
TEX9	374618	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	56686956	56686956	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TEX9-90	NM_198524	exon9	c.752delA	p.E251fs	.	.	85	29	102	0	.	0	0	0	0	0
IRGQ	126298	broad.mit.edu	37	19	44099300	44099300	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	IRGQ-92	NM_001007561	exon2	c.191delC	p.P64fs	GCGGGTGGGCAGC	.	5	2	11	0	.	0	0	0	0	0
FAM117B	150864	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	203560690	203560690	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	FAM117B-91	NM_173511	exon2	c.688delG	p.A230fs	.	.	92	32	87	0	.	0	0	0	0	0
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	56098141	56098141	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CTCFL-292	NM_001269044	exon2	c.737delA	p.N246fs	.	.	72	24	85	0	.	0	0	0	0	0
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140572491	140572494	+	Frame_Shift_Del	DEL	AGTC	AGTC	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	AGTC	AGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	PCDHB10-92	NM_018930	exon1	c.366_369del	p.122_123del	.	.	182	54	175	0	.	0	0	0	0	0
EHMT2	10919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31852462	31852462	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	EHMT2-91	NM_006709	exon20	c.2563delC	p.L855fs	.	.	66	27	96	0	.	0	0	0	0	0
ODF2	4957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131250301	131250301	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ODF2-69	NM_153435	exon14	c.1725delG	p.L575fs	.	.	46	16	64	0	.	0	0	0	0	0
TSHZ1	10194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	72999467	72999468	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TSHZ1-90	NM_005786	exon2	c.1970_1971insA	p.A657fs	.	.	103	31	136	0	.	0	0	0	0	0
TSHZ1	10194	hgsc.bcm.edu	37	18	72999471	72999472	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TSHZ1-90	NM_005786	exon2	c.1974_1975insA	p.K658fs	.	.	103	25	137	0	.	0	0	0	0	0
SMARCB1	6598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	24175838	24175839	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SMARCB1-2699	NM_003073	exon8	c.1066_1067insTT	p.L356fs	.	.	90	24	83	0	.	0	0	0	0	0
CLK4	57396	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	178030682	178030683	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CLK4-359	NM_020666	exon13	c.1382_1383insA	p.T461fs	.	.	61	30	79	0	.	0	0	0	0	0
ZNF567	163081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	37210700	37210701	+	Missense_Mutation	DNP	TC	TC	AT	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ZNF567-90	NM_152603	exon4	c.C982T	p.H359Y	AGAACTCACACGG	.	82.0	32.0	89.0	0.0	.	0	0	0	0	0
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30038228	30038229	+	Missense_Mutation	DNP	CT	CT	AC	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	NF2-4696	NM_000268	exon4	c.T402C	p.P134H	CTGCCCTCCTGAG	.	49.0	20.0	76.0	0.0	.	0	0	0	0	0
CTNNAL1	8727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	111761412	111761413	+	Missense_Mutation	DNP	AT	AT	CC	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CTNNAL1-228	NM_003798	exon2	c.A265G	p.I89G	TGGCTATAGCTTC	.	55.0	14.0	44.0	0.0	.	0	0	0	0	0