Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	8415616	8415616	+	Silent	SNP	G	G	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	RERE-515	NM_012102	exon23	c.C4530A	p.P1510P	TGACATGGGGGGT	.	36	9	39	0	.	11	6	5	0	0
TSPAN2	10100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	115601516	115601516	+	Silent	SNP	G	G	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	TSPAN2-226	NM_005725	exon5	c.C432T	p.T144T	GTGGAAGGTGATG	.	167	40	203	0	.	0	0	0	0	0
RGL1	23179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	183885638	183885638	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	RGL1-725	NM_015149	exon17	c.G1912C	p.G638R	TCCTCAGGGATGT	.	169	47	153	0	.	4	1	3	0	0
PLAU	5328	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	75672687	75672687	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PLAU-118	NM_002658	exon5	c.T199A	p.S67T	GATAAGTCAAAAA	.	62	6	75	0	.	0	0	0	0	0
RRP8	23378	ucsc.edu	37	11	6622569	6622569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	RRP8-90	NM_015324	exon3	c.G727A	p.A243T	GCTGTGCCATGCG	.	40	4	26	0	.	11	11	0	0	0
WDR74	54663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62606983	62606983	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	WDR74-23	NM_018093	exon2	c.G60C	p.L20F	ACCTTTCAAGATC	.	97	26	104	0	.	0	0	0	0	0
ESRRA	2101	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64074935	64074935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ESRRA-90	NM_004451	exon2	c.C284A	p.S95Y	TGGCATCCTGTGA	.	45	6	33	0	.	25	15	10	0	0
SLCO2B1	11309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74915493	74915493	+	Silent	SNP	C	C	T	rs192050675		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	SLCO2B1-154	NM_007256	exon14	c.C1998T	p.F666F	CTGCTTCGCCTTA	.	130	27	128	0	A|0.000;C|0.999	5	5	0	0	0
MMP13	4322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102822873	102822873	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	MMP13-229	NM_002427	exon5	c.G667C	p.E223Q	CGAACTCATGCGC	.	179	32	175	0	.	0	0	0	0	0
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2910328	2910328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	FKBP4-226	NM_002014	exon9	c.G1078A	p.G360R	CGCCGGGGAGAGG	.	150	33	115	0	.	83	52	31	0	0
LRRC23	10233	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	7023220	7023220	+	Silent	SNP	A	A	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	LRRC23-23	NM_006992	exon7	c.A924C	p.A308A	GGGTGCAGAATGG	.	170	65	153	0	.	62	15	47	0	0
CD163	9332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	7640255	7640255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CD163-98	NM_203416	exon8	c.C1750T	p.R584C	CCAAGCGAATTTC	.	166	9	114	0	.	0	0	0	0	0
MARCH9	92979	hgsc.bcm.edu	37	12	58149446	58149446	+	Silent	SNP	C	C	T	rs1689582		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	MARCH9-492	NM_138396	exon1	c.C135T	p.G45G	CGCTGGCTGCTCC	.	4	3	0	0	T|0.004;G|0.064	0	0	0	0	0
KERA	11081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	91449805	91449805	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	KERA-91	NM_007035	exon2	c.C254G	p.T85S	GGAATGGTTTCTA	.	115	19	116	0	.	0	0	0	0	0
SH2B3	10019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	111885276	111885276	+	Silent	SNP	G	G	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	SH2B3-91	NM_005475	exon6	c.G1164A	p.V388V	TGGAGTGTTCCTG	.	165	27	167	2	.	0	0	0	0	0
DDX54	79039	hgsc.bcm.edu	37	12	113596868	113596868	+	Silent	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	DDX54-227	NM_001111322	exon20	c.C2463G	p.R821R	TTCCGGGCGGACT	.	31	2	26	0	.	99	99	0	0	0
DDX54	79039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113610194	113610194	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	DDX54-227	NM_024072	exon11	c.T1243C	p.F415L	CGGGGAAGCTGTA	.	51	21	48	0	.	36	12	24	0	0
CDK8	1024	hgsc.bcm.edu;bcgsc.ca	37	13	26975738	26975738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CDK8-1023	NM_001260	exon12	c.C1246A	p.L416I	GGTGGACTTATCA	.	97	12	117	0	.	1	1	0	0	0
DIAPH3	81624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	60566699	60566699	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	DIAPH3-516	NM_001042517	exon10	c.A1033T	p.I345F	CATTGATGAGCTG	.	52	8	42	0	.	0	0	0	0	0
CPNE6	9362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24545747	24545747	+	Silent	SNP	G	G	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CPNE6-93	NM_006032	exon13	c.G1146A	p.P382P	TGACCCGGAAAAT	.	94	30	139	0	.	0	0	0	0	0
PAK6	56924	hgsc.bcm.edu	37	15	40557188	40557188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PAK6-996	NM_001128629	exon3	c.A202G	p.K68E	CCCATGAAGGTAA	.	37	2	46	0	.	0	0	0	0	0
HMGN2P46	283651	ucsc.edu;bcgsc.ca	37	15	45847824	45847824	+	RNA	SNP	G	G	A	rs183934743	by1000genomes;alternate_allele	TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	.	.	.	.	.	TCCACTGCCCAGT	.	39	9	53	0	G|0.999;T|0.001	0	0	0	0	0
SEMA7A	8482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	74708932	74708932	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	SEMA7A-153	NM_003612	exon7	c.T785G	p.V262G	TGGGCCACACGGG	.	63	18	68	0	.	0	0	0	0	0
PEAK1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	77406689	77406689	+	Silent	SNP	G	G	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	.	NM_024776	exon8	c.C5050T	p.L1684L	GTACTAGGCTAGG	.	137	34	143	0	.	1	1	0	0	0
ZNF423	23090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	49670185	49670185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ZNF423-228	NM_015069	exon4	c.A2878G	p.M960V	GACACATGTAGTG	.	62	12	61	0	.	1	1	0	0	0
PER1	5187	broad.mit.edu	37	17	8047060	8047060	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PER1-723	NM_002616	exon19	c.A2596C	p.T866P	AGGGGGTGGAGGG	.	28	6	23	7	.	12	12	0	0	0
FLII	2314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18150655	18150655	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	FLII-91	NM_002018	exon21	c.T2504G	p.F835C	TTCTTGAACTTGG	.	109	18	119	0	.	37	20	17	0	0
TAF15	8148	broad.mit.edu;bcgsc.ca	37	17	34149828	34149828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	TAF15-723	NM_139215	exon6	c.C475T	p.H159Y	AGCCACCACACAC	.	90	6	120	0	.	1	1	0	0	0
ZPBP2	124626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38027753	38027753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ZPBP2-91	NM_199321	exon4	c.T281C	p.L94P	GACAGCTGATGGT	.	59	15	96	0	.	0	0	0	0	0
PLVAP	83483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17476968	17476968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PLVAP-90	NM_031310	exon2	c.A406G	p.I136V	AGATGATGGCAGC	.	191	52	196	0	.	25	25	0	0	0
APLP1	333	ucsc.edu	37	19	36361805	36361805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	APLP1-92	NM_005166	exon3	c.C299T	p.P100L	TGTACCCGGAGCT	.	13	4	13	0	.	0	0	0	0	0
ZNF780A	284323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40581903	40581903	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ZNF780A-22	NM_001142577	exon6	c.C449G	p.P150R	TGAGTAGGCAGTT	.	76	17	97	0	.	0	0	0	0	0
NLRP7	199713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55449434	55449434	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	NLRP7-291	NM_001127255	exon5	c.A2107T	p.T703S	GACAGGTGCTACG	.	418	101	421	0	.	0	0	0	0	0
TRAPPC12	51112	hgsc.bcm.edu	37	2	3461447	3461447	+	Missense_Mutation	SNP	C	C	G	rs142960119	byfrequency;alternate_allele	TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	.	NM_016030	exon7	c.C1586G	p.T529S	GCGTGACTCAGGA	.	56	3	51	0	C|1.000;T|0.000	25	25	0	0	0
TRAPPC12	51112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	3483103	3483103	+	Silent	SNP	G	G	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	.	NM_016030	exon12	c.G2079A	p.V693V	GAGCGTGCTCTTC	.	124	30	160	0	.	134	86	48	0	0
BIRC6	57448	hgsc.bcm.edu	37	2	32664736	32664736	+	Silent	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	BIRC6-233	NM_016252	exon16	c.T3792C	p.A1264A	TTTGGCTAAAGTT	.	39	2	37	0	.	0	0	0	0	0
ZFP36L2	678	hgsc.bcm.edu	37	2	43451957	43451957	+	Missense_Mutation	SNP	G	G	A	rs149290349		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ZFP36L2-226	NM_006887	exon2	c.C986T	p.A329V	GCCGCAGCCGCGG	.	11	6	3	0	G|0.963;A|0.037	0	0	0	0	0
ANKRD36B	57730	hgsc.bcm.edu	37	2	98177298	98177298	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	.	NM_025190	exon7	c.G789C	p.E263D	TACCTTCTCAGCT	.	38	2	30	0	.	0	0	0	0	0
SESTD1	91404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	180016091	180016091	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	SESTD1-228	NM_178123	exon6	c.A397T	p.T133S	AACGAGTCAATTT	.	41	17	46	0	.	2	1	1	0	0
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	225422410	225422410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CUL3-229	NM_001257198	exon2	c.T248C	p.L83P	TCTCTTAGTCCAG	.	53	16	35	0	.	6	2	4	0	0
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	225449722	225449722	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CUL3-229	NM_003590	exon1	c.C5A	p.S2X	AGATTCGACATGG	.	33	8	39	0	.	1	1	0	0	0
NCOA5	57727	bcgsc.ca	37	20	44697260	44697260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	NCOA5-226	NM_020967	exon4	c.A383G	p.D128G	TATCGGTCATAAG	.	101	4	123	1	.	0	0	0	0	0
CHRNA4	1137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61982183	61982183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CHRNA4-91	NM_000744	exon5	c.A580G	p.M194V	TGTGCATGTTCAC	.	96	25	97	0	.	0	0	0	0	0
ARFRP1	10139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62333531	62333531	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ARFRP1-291	NM_001134758	exon5	c.C303G	p.D101E	GGTGGAGTCAATG	.	69	20	75	0	.	53	29	24	0	0
ZDHHC8	29801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	20130720	20130720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ZDHHC8-91	NM_001185024	exon10	c.C1567T	p.R523C	CTACCCCGCAGCT	.	56	14	74	0	.	29	14	15	0	0
PPIL2	23759	hgsc.bcm.edu	37	22	22039049	22039049	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PPIL2-92	NM_014337	exon10	c.G561C	p.E187D	TGAAGAGAAGGCC	.	39	7	35	0	.	0	0	0	0	0
MGAT3	4248	hgsc.bcm.edu;broad.mit.edu	37	22	39883780	39883780	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	MGAT3-90	NM_002409	exon2	c.C428G	p.S143C	ACGGCTCCTCGGC	.	4	4	9	0	.	0	0	0	0	0
ADSL	158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40745897	40745897	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ADSL-652	NM_001123378	exon2	c.T215A	p.I72N	AGAACATCGACTT	.	56	11	88	0	.	18	9	9	0	0
PARVG	64098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	44581694	44581694	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PARVG-90	NM_001254742	exon3	c.A287T	p.K96M	GAGGAAAGAAGAA	.	46	11	29	0	.	0	0	0	0	0
HDAC10	83933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	50684494	50684494	+	Silent	SNP	A	A	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	HDAC10-226	NM_032019	exon18	c.T1678C	p.L560L	AGCCCAAGATGCA	.	47	5	48	0	.	25	25	0	0	0
CRBN	51185	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	3209360	3209360	+	Silent	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CRBN-91	NM_016302	exon5	c.A645G	p.R215R	GTCTTCTCTTGAG	.	155	13	171	0	.	7	7	0	0	0
CAPN7	23473	hgsc.bcm.edu	37	3	15288291	15288291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CAPN7-91	NM_014296	exon18	c.T2063C	p.L688S	ACACCTTATCAAA	.	37	2	39	0	.	0	0	0	0	0
ACAD9	28976	hgsc.bcm.edu	37	3	128612493	128612493	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ACAD9-92	NM_014049	exon3	c.G340C	p.E114Q	CCAGAAGAATATG	.	40	2	43	0	.	0	0	0	0	0
COMMD2	51122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	149468478	149468478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	COMMD2-90	NM_016094	exon4	c.G389A	p.R130Q	TCTAGTCGCCATT	.	123	25	103	0	.	0	0	0	0	0
FETUB	26998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186362554	186362554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	FETUB-92	NM_014375	exon4	c.A439G	p.I147V	AAAAAGATTTACA	.	106	27	156	0	.	0	0	0	0	0
EGF	1950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	110865158	110865158	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	EGF-524	NM_001963	exon4	c.A670T	p.S224C	GAAGGAAGCAATT	.	70	20	75	0	.	0	0	0	0	0
INPP4B	8821	hgsc.bcm.edu	37	4	143159034	143159034	+	Silent	SNP	A	A	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	INPP4B-228	NM_003866	exon13	c.T819C	p.I273I	TTCTTTAATGTGA	.	37	2	38	0	.	1	1	0	0	0
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	37187887	37187887	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	C5orf42-94	NM_023073	exon22	c.C3869G	p.S1290C	CTATAGGATAACT	.	26	5	56	0	.	1	1	0	0	0
C7	730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	40964972	40964972	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	C7-22	NM_000587	exon14	c.C1879G	p.Q627E	CATTGTCAGAGTG	.	159	8	180	0	.	0	0	0	0	0
SPINK5	11005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	147510840	147510840	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	SPINK5-138	NM_001127698	exon32	c.G3073C	p.D1025H	TGCAAAGACTACC	.	239	44	276	0	.	0	0	0	0	0
HOXA1	3198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27134334	27134334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	HOXA1-93	NM_005522	exon2	c.G733A	p.E245K	CCTTCTCCAGTTC	.	205	46	155	0	.	4	3	1	0	0
GTF2I	2969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	74146900	74146900	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	GTF2I-90	NM_032999	exon15	c.G1201C	p.G401R	GTAGAAGGACTTC	.	125	36	107	0	.	18	12	6	0	0
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	78131031	78131031	+	Silent	SNP	C	C	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	MAGI2-461	NM_012301	exon5	c.G828T	p.V276V	ACTGTACACTGGT	.	105	22	77	0	.	1	1	0	0	0
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82763823	82763823	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PCLO-29	NM_014510	exon3	c.G3043C	p.A1015P	TTGGAGCTTGTTC	.	57	16	60	0	.	0	0	0	0	0
CYP3A7	1551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99328744	99328744	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CYP3A7-91	NM_000765	exon2	c.A103T	p.K35X	CAAGCTTCTTAAA	.	152	56	104	0	.	0	0	0	0	0
CUX1	1523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	101845410	101845410	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CUX1-160	NM_001202543	exon18	c.A2866T	p.T956S	GTGGACACCATCG	.	230	78	172	0	.	3	1	2	0	0
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116417463	116417463	+	Missense_Mutation	SNP	C	C	T	rs121913244		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	MET-5874	NM_001127500	exon16	c.C3334T	p.H1112Y	GTATATCATGGGA	.	181	62	161	0	.	9	3	6	0	0
C7orf55-LUC7L2	100996928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	139030365	139030365	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	.	NM_001244584	exon2	c.A257T	p.K86M	ATGGCAAGGGTGA	.	81	16	68	0	.	96	54	42	0	0
KEL	3792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142658089	142658089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	KEL-93	NM_000420	exon4	c.G326T	p.G109V	GCCCTTCCACAGG	.	208	40	191	0	.	0	0	0	0	0
OR2A7	401427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	143956670	143956670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	OR2A7-23	NM_001005328	exon1	c.G52A	p.V18I	GGCCAACGGGAAA	.	432	31	407	2	.	3	3	0	0	0
FBXO43	286151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	101152996	101152996	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	FBXO43-226	NM_001029860	exon2	c.G1486C	p.D496H	AGATGTCCAGTTT	.	160	36	167	0	.	0	0	0	0	0
CPSF1	29894	hgsc.bcm.edu	37	8	145626922	145626922	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CPSF1-91	NM_013291	exon4	c.G208C	p.A70P	AGGAGGCAGCAAG	.	32	2	38	0	.	10	10	0	0	0
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	14801824	14801824	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	FREM1-138	NM_144966	exon21	c.G3520C	p.V1174L	GGTCCACAGCGCT	.	160	36	227	0	.	0	0	0	0	0
FCN1	2219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137801883	137801883	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	FCN1-154	NM_002003	exon9	c.C742G	p.L248V	CCGTTAGAGAATT	.	253	53	283	0	.	0	0	0	0	0
LHX3	8022	ucsc.edu	37	9	139091693	139091693	+	Silent	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	LHX3-91	NM_014564	exon3	c.G300A	p.L100L	GATGCCCAGCTGG	.	23	4	18	0	.	0	0	0	0	0
PRKX	5613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	3544550	3544550	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PRKX-540	NM_005044	exon5	c.C725G	p.P242R	AACGGAGGAAACC	.	25	7	24	0	.	0	0	0	0	0
KIAA2022	340533	broad.mit.edu	37	X	73961092	73961092	+	Silent	SNP	C	C	T	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	KIAA2022-183	NM_001008537	exon3	c.G3300A	p.E1100E	GACACCCTCTTGG	.	83	4	107	0	.	0	0	0	0	0
SYTL4	94121	hgsc.bcm.edu	37	X	99945081	99945081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	SYTL4-132	NM_001129896	exon9	c.A799G	p.R267G	AAGGCCTGAGGAT	.	59	3	67	1	.	0	0	0	0	0
CDK8	1024	broad.mit.edu;bcgsc.ca	37	13	26975735	26975736	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CDK8-1023	NM_001260	exon12	c.1243_1244del	p.415_415del	TCAGGTGGACTTA	.	92	11	117	0	.	0	0	0	0	0
ANKDD1A	348094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	65214185	65214185	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ANKDD1A-69	NM_182703	exon4	c.333delA	p.V111fs	.	.	80	17	76	0	.	0	0	0	0	0
TIMP2	7077	broad.mit.edu;bcgsc.ca	37	17	76867041	76867047	+	Frame_Shift_Del	DEL	GGGGGCC	GGGGGCC	-	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	GGGGGCC	GGGGGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	TIMP2-650	NM_003255	exon3	c.273_279del	p.91_93del	CGAGGAGGGGGCC	.	161	10	171	0	.	0	0	0	0	0
ST6GAL1	6480	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	186790685	186790685	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ST6GAL1-650	NM_003032	exon5	c.754delG	p.G252fs	.	.	142	29	145	0	.	0	0	0	0	0
ITGA1	3672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	52204750	52204750	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ITGA1-228	NM_181501	exon13	c.1478delT	p.I493fs	.	.	145	31	168	0	.	0	0	0	0	0
LARS	51520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	145552256	145552256	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	LARS-90	NM_020117	exon3	c.207delA	p.K69fs	.	.	62	23	48	0	.	0	0	0	0	0
PRIM2	5558	broad.mit.edu;bcgsc.ca	37	6	57246849	57246850	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PRIM2-227	.	.	.	.	GCTCTGGATTTGT	.	35	9	45	0	.	0	0	0	0	0