Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
KIF1B	23095	hgsc.bcm.edu	37	1	10336447	10336447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	KIF1B-93	NM_183416	exon11	c.A1009G	p.S337G	ACTTTGAGCACTC	.	47	3	85	0	.	0	0	0	0	0
MIER1	57708	hgsc.bcm.edu	37	1	67394625	67394625	+	Silent	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	MIER1-91	NM_001146111	exon3	c.T39C	p.T13T	GTGGACTCTTTTC	.	32	2	52	0	.	1	1	0	0	0
PRRC2C	23215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171553162	171553162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	.	NM_015172	exon29	c.C7471T	p.H2491Y	GCTATTCACAACT	.	213	75	232	1	.	68	44	24	0	0
INTS7	25896	broad.mit.edu	37	1	212148638	212148638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	INTS7-90	NM_015434	exon13	c.T1685C	p.L562P	CTATTTAGCCAGA	.	203	4	194	1	.	2	2	0	0	0
GYLTL1B	120071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	45948105	45948105	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	GYLTL1B-92	NM_152312	exon9	c.A1121C	p.E374A	GGAGAGAGCTCTT	.	104	35	92	0	.	46	17	29	0	0
CORO1B	57175	broad.mit.edu	37	11	67206237	67206237	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CORO1B-108	NM_020441	exon10	c.C1249G	p.P417A	TGGCGGGCCGGCT	.	11	7	11	0	.	62	25	37	0	0
OR8D1	283159	hgsc.bcm.edu;broad.mit.edu	37	11	124180427	124180427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	OR8D1-71	NM_001002917	exon1	c.C236T	p.P79L	ATTTTGGGAGTAA	.	82	7	69	0	.	0	0	0	0	0
KLRB1	3820	broad.mit.edu	37	12	9754098	9754098	+	Silent	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	KLRB1-90	NM_002258	exon2	c.A183G	p.S61S	CTTACCTGAAACA	.	55	3	72	0	.	0	0	0	0	0
LDHB	3945	broad.mit.edu	37	12	21788543	21788543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	LDHB-290	NM_002300	exon8	c.A938G	p.E313G	GCAACCTCATCAT	.	282	5	329	0	.	1953	1953	0	0	0
CPNE6	9362	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24544466	24544466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CPNE6-93	NM_006032	exon8	c.C758A	p.T253K	AAGGGACGGCAAA	.	271	121	250	1	.	0	0	0	0	0
NPAS3	64067	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	34263109	34263109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	NPAS3-93	NM_001164749	exon10	c.A1160G	p.N387S	TGCTGAATAAGGG	.	199	16	196	0	.	2	2	0	0	0
C14orf142	84520	broad.mit.edu	37	14	93670051	93670051	+	Silent	SNP	C	C	T	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	C14orf142-90	NM_032490	exon2	c.G285A	p.R95R	TTTTGGCCGTTTT	.	204	6	164	0	.	31	31	0	0	0
PIGB	9488	hgsc.bcm.edu	37	15	55626159	55626159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	PIGB-226	NM_004855	exon6	c.G748A	p.E250K	TGTCAAGAACCAA	.	59	3	69	0	.	10	10	0	0	0
GCOM1	145781	broad.mit.edu	37	15	57922023	57922023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	GCOM1-91	NM_001018090	exon6	c.C649G	p.Q217E	GTAGCGCAAGTTG	.	106	5	113	0	.	0	0	0	0	0
ZSCAN10	84891	hgsc.bcm.edu	37	16	3142579	3142579	+	Silent	SNP	C	C	T	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	ZSCAN10-227	NM_032805	exon1	c.G195A	p.E65E	GATGCCCTCGAGC	.	7	2	7	0	.	0	0	0	0	0
SRCAP	10847	hgsc.bcm.edu	37	16	30745323	30745323	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	SRCAP-94	NM_006662	exon30	c.C6603G	p.F2201L	CTATTTCAAACAG	.	34	2	27	0	.	2	2	0	0	0
ZC3H18	124245	broad.mit.edu	37	16	88694029	88694029	+	Splice_Site	SNP	G	G	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	ZC3H18-69	NM_144604	exon14	c.2109-1G>C	.	TGTCCAGGTCCCT	.	192	4	186	0	.	1	1	0	0	0
HIC1	3090	hgsc.bcm.edu	37	17	1960939	1960939	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	HIC1-135	NM_001098202	exon2	c.C1012G	p.L338V	CCGGGCCTGGGTA	.	10	6	8	2	.	0	0	0	0	0
ASIC2	40	hgsc.bcm.edu	37	17	31618997	31618997	+	Missense_Mutation	SNP	C	C	A	rs112647385		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	.	NM_183377	exon1	c.G137T	p.R46L	AGCGCCCGCTCGC	.	7	5	2	1	C|0.740;A|0.260	0	0	0	0	0
CDC27	996	hgsc.bcm.edu	37	17	45249350	45249350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CDC27-291	NM_001114091	exon3	c.A184G	p.K62E	GTCCTTTCAAGAG	.	80	4	99	2	.	12	12	0	0	0
TBX4	9496	hgsc.bcm.edu;broad.mit.edu	37	17	59560359	59560359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	TBX4-227	NM_018488	exon8	c.G1120A	p.D374N	CCCTACGACCAGC	.	91	6	91	0	.	0	0	0	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14754902	14754902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	ANKRD30B-24	NM_001145029	exon4	c.G515A	p.S172N	AGGCTAGCCTCAC	.	5	4	13	2	.	0	0	0	0	0
FBXO27	126433	broad.mit.edu	37	19	39521937	39521937	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	FBXO27-227	NM_178820	exon3	c.C388G	p.Q130E	CGTGTTGCACCAT	.	142	20	122	9	.	1	1	0	0	0
THSD7B	80731	broad.mit.edu	37	2	138400116	138400116	+	Silent	SNP	C	C	T	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	THSD7B-75	.	.	.	.	GCCATGCCCCACA	.	220	5	219	0	.	0	0	0	0	0
CACNB4	785	hgsc.bcm.edu	37	2	152727361	152727361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CACNB4-24	NM_001145798	exon7	c.A613G	p.K205E	CCACTTTTTGCTT	.	33	2	35	0	.	0	0	0	0	0
TMEFF2	23671	broad.mit.edu	37	2	193056717	193056717	+	Splice_Site	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	TMEFF2-524	NM_016192	exon3	c.173-2A>G	.	ATAACCTCAAATT	.	85	3	88	0	.	0	0	0	0	0
CCDC108	255101	ucsc.edu	37	2	219868976	219868976	+	Silent	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CCDC108-94	NM_194302	exon33	c.A5253G	p.P1751P	GTGCTCTGGTCTG	.	332	2	315	0	.	4	4	0	0	0
AGAP1	116987	ucsc.edu	37	2	237028963	237028963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	AGAP1-93	NM_001037131	exon17	c.G2242A	p.A748T	CGGACGGCCATCC	.	93	4	109	0	.	7	7	0	0	0
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu	37	22	45929662	45929662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	FBLN1-515	NM_006487	exon7	c.G668A	p.G223D	TCACGGGCAGCCA	.	268	17	236	2	.	3	3	0	0	0
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu	37	22	46785299	46785299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CELSR1-525	NM_014246	exon18	c.T6443C	p.L2148P	CCAAAGAGCGTGC	.	107	6	93	0	.	28	28	0	0	0
PRRC1	133619	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	126860252	126860252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	PRRC1-68	NM_130809	exon3	c.G133T	p.V45L	CCAAATGTATCCT	.	408	28	429	1	.	50	50	0	0	0
BRD8	10902	broad.mit.edu	37	5	137506598	137506598	+	Silent	SNP	C	C	T	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	BRD8-91	NM_001164326	exon6	c.G363A	p.R121R	CTTTAGCCGTCTA	.	193	4	228	0	.	0	0	0	0	0
PCDHA4	56144	broad.mit.edu	37	5	140187880	140187880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	PCDHA4-96	NM_031500	exon1	c.G1108A	p.A370T	GTCATCGCCCTGA	.	162	4	144	0	.	6	5	1	0	0
KIAA0141	9812	broad.mit.edu	37	5	141304998	141304998	+	Missense_Mutation	SNP	C	C	T	rs148625091		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	KIAA0141-91	NM_001142603	exon3	c.C170T	p.T57M	CAGGCACGAGCGG	.	166	6	150	1	C|1.000;T|0.000	37	37	0	0	0
AMD1	262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	111208734	111208734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	AMD1-91	NM_001634	exon2	c.A137G	p.D46G	TGAAGGATGTGCA	.	305	53	271	0	.	30	24	6	0	0
SNX13	23161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	17836512	17836512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	SNX13-650	NM_015132	exon25	c.A2564G	p.D855G	CTTTTATCTCTGC	.	149	14	288	0	.	43	43	0	0	0
MUC17	140453	broad.mit.edu	37	7	100676555	100676555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	MUC17-95	NM_001040105	exon3	c.C1858T	p.P620S	AGCATGCCAACCT	.	524	8	449	0	.	0	0	0	0	0
BRAF	673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	A	T	rs121913227	bycluster	TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	BRAF-92146	NM_004333	exon15	c.T1799A	p.V600E	GATTTCACTGTAG	.	127	50	189	0	.	10	8	2	0	0
ARSF	416	broad.mit.edu;bcgsc.ca	37	X	3028196	3028196	+	Silent	SNP	C	C	T	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	ARSF-132	NM_004042	exon10	c.C1293T	p.P431P	CATGCCCTTGCTG	.	252	9	220	1	.	0	0	0	0	0
LUZP4	51213	broad.mit.edu	37	X	114541171	114541171	+	Silent	SNP	T	T	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	LUZP4-132	NM_016383	exon4	c.T744A	p.T248T	AGCCACTCAGAGA	.	201	7	293	0	.	0	0	0	0	0
WBP1L	54838	broad.mit.edu	37	10	104503830	104503830	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	.	NM_001083913	exon1	c.20delT	p.L7fs	GGCTCCTGGGTGG	.	6	2	9	0	.	0	0	0	0	0
ZMYND15	84225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	4645266	4645266	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	ZMYND15-90	NM_001136046	exon4	c.884delG	p.R295fs	.	.	224	83	222	0	.	0	0	0	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94639430	94639431	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	ARHGAP29-296	NM_004815	exon23	c.3781_3782insT	p.V1261fs	CCTACACAAATTG	.	340	17	335	0	.	0	0	0	0	0
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	61891030	61891031	+	Missense_Mutation	DNP	AG	AG	CT	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CDH8		exon4	c.C659A	p.P220Q	GTTTCAGGCTCAA	.	108.0	34.0	145.0	0.0	.	0	0	0	0	0