Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ARHGEF10L	55160	hgsc.bcm.edu	37	1	18023490	18023490	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ARHGEF10L-292	NM_018125	exon29	c.C3455G	p.A1152G	GGCAGGCACACGA	.	30	2	32	0	.	21	21	0	0	0
IL22RA1	58985	bcgsc.ca	37	1	24447843	24447843	+	Missense_Mutation	SNP	G	G	T	rs75716137		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	IL22RA1-91	NM_021258	exon7	c.C1177A	p.Q393K	TGGCTTGAGGGGC	.	109	34	173	0	.	2	2	0	0	0
PPCS	79717	bcgsc.ca	37	1	42922310	42922310	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PPCS-90	NM_024664	exon1	c.G74C	p.R25P	TGGCTCGCTTCGC	.	24	16	71	0	.	4	4	0	0	0
PTPRF	5792	bcgsc.ca	37	1	44070598	44070598	+	Missense_Mutation	SNP	C	C	T	rs147874335		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PTPRF-232	NM_002840	exon17	c.C3062T	p.A1021V	GGGTGGCGGCTGC	.	124	6	149	0	C|1.000;T|0.000	56	56	0	0	0
KIAA1324	57535	bcgsc.ca	37	1	109735398	109735398	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KIAA1324-157	NM_020775	exon14	c.A1849C	p.T617P	TCAGGAACCTGCC	.	227	80	286	32	.	0	0	0	0	0
KCNC4	3749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110774916	110774916	+	Silent	SNP	G	G	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KCNC4-154	NM_004978	exon4	c.G1893A	p.L631L	GACTCTGTTCCTG	.	32	10	25	0	.	0	0	0	0	0
DENND2D	79961	hgsc.bcm.edu	37	1	111739853	111739853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	DENND2D-227	NM_024901	exon5	c.T449C	p.L150P	TTGGGAAGGCGAG	.	30	2	25	0	.	21	21	0	0	0
VANGL1	81839	bcgsc.ca	37	1	116226631	116226631	+	Nonsense_Mutation	SNP	C	C	A	rs74117015		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	VANGL1-226	NM_001172412	exon6	c.C1013A	p.S338X	GGGACTCAAGCCA	.	66	29	81	2	C|0.500;A|0.500	3	3	0	0	0
NBPF14	25832	hgsc.bcm.edu	37	1	148015634	148015634	+	Missense_Mutation	SNP	T	T	C	rs200156420		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	NBPF14-91	NM_015383	exon8	c.A997G	p.N333D	CCATGTTAACAGC	.	58	3	46	1	.	0	0	0	0	0
ZNF687	57592	bcgsc.ca	37	1	151263397	151263397	+	Missense_Mutation	SNP	G	G	T	rs77014701		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ZNF687-92	NM_020832	exon9	c.G3426T	p.L1142F	TGGCTTGTGCTTT	.	82	24	85	0	C|1.000	11	10	1	0	0
LINGO4	339398	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	151774638	151774638	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	LINGO4-90	NM_001004432	exon2	c.G543C	p.K181N	GCTCAACTTGGCT	.	101	6	115	0	.	0	0	0	0	0
CACNA1S	779	bcgsc.ca	37	1	201017805	201017805	+	Missense_Mutation	SNP	A	A	C	rs79011683		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	CACNA1S-94	NM_000069	exon36	c.T4346G	p.V1449G	ATGCCCACCAGCC	.	65	36	66	6	.	0	0	0	0	0
OBSCN	84033	bcgsc.ca	37	1	228430947	228430947	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	OBSCN-403	NM_001271223	exon11	c.C3269G	p.A1090G	CAGGGGCCAGTGC	.	29	20	37	0	.	0	0	0	0	0
OBSCN	84033	bcgsc.ca	37	1	228434292	228434292	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	OBSCN-403	NM_001271223	exon14	c.C4097G	p.A1366G	CAGGGGCCAGTGC	.	95	41	148	0	.	0	0	0	0	0
OBSCN	84033	bcgsc.ca	37	1	228487735	228487735	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	OBSCN-403	NM_001271223	exon51	c.C13627G	p.Q4543E	CTGAAGCAGGATG	.	91	4	119	0	.	0	0	0	0	0
ABCB10	23456	hgsc.bcm.edu	37	1	229685147	229685147	+	Missense_Mutation	SNP	G	G	C	rs138482043	byfrequency;alternate_allele	TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ABCB10-153	NM_012089	exon2	c.C552G	p.I184M	CATGGAGATAACA	.	38	2	53	0	G|0.993;A|0.007	2	2	0	0	0
EXO1	9156	bcgsc.ca	37	1	242020734	242020734	+	Missense_Mutation	SNP	C	C	A	rs78172944		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	EXO1-661	NM_130398	exon7	c.C493A	p.Q165K	ATTGTGCAAGCCA	.	110	62	118	3	.	0	0	0	0	0
PDE6C	5146	hgsc.bcm.edu	37	10	95396764	95396764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PDE6C-94	NM_006204	exon11	c.A1426G	p.K476E	CAAGAGAAGTTAA	.	24	2	25	0	.	0	0	0	0	0
DNMBP	23268	bcgsc.ca	37	10	101646368	101646368	+	Missense_Mutation	SNP	C	C	A	rs201493282		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	DNMBP-233	NM_015221	exon13	c.G3307T	p.V1103F	AGATGACAAGCCG	.	122	33	162	0	.	2	1	1	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1258389	1258389	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	.	NM_002458	exon25	c.T3292G	p.S1098A	TGCCGCTCCCAGG	.	24	2	43	0	.	0	0	0	0	0
MRVI1	10335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	10626061	10626061	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	MRVI1-25	NM_130385	exon13	c.G1634C	p.R545T	TCATTTCTAAAGG	.	82	18	130	0	.	1	1	0	0	0
USH1C	10083	bcgsc.ca	37	11	17542427	17542427	+	Silent	SNP	G	G	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	USH1C-91	NM_005709	exon14	c.C1200A	p.R400R	TGGCTTGCGAAGG	.	313	51	427	0	.	0	0	0	0	0
USH1C	10083	bcgsc.ca	37	11	17542436	17542436	+	Silent	SNP	T	T	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	USH1C-91	NM_005709	exon14	c.A1191C	p.V397V	AAGGGGTACTGGG	.	344	83	481	2	.	25	23	2	0	0
MRPL21	219927	bcgsc.ca	37	11	68660885	68660885	+	Silent	SNP	G	G	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	MRPL21-90	NM_181514	exon5	c.C435A	p.G145G	TGGCTTGCCAAGC	.	59	29	78	1	.	0	0	0	0	0
MAML2	84441	hgsc.bcm.edu	37	11	95825431	95825431	+	Silent	SNP	T	T	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	MAML2-850	NM_032427	exon2	c.A1764G	p.Q588Q	TTGCTGTTGGGTG	.	6	2	12	2	.	7	7	0	0	0
PPHLN1	51535	hgsc.bcm.edu	37	12	42840394	42840394	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PPHLN1-154	NM_016488	exon13	c.G1351C	p.D451H	TTCTAGGATGTAA	.	33	2	29	0	.	0	0	0	0	0
KRT1	3848	bcgsc.ca	37	12	53069392	53069392	+	Missense_Mutation	SNP	G	G	T	rs75007002		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KRT1-92	NM_006121	exon9	c.C1520A	p.T507K	TGGCTTGTGCTCA	.	125	52	107	0	.	0	0	0	0	0
NAB2	4665	broad.mit.edu	37	12	57485439	57485439	+	Silent	SNP	G	G	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	NAB2-92	NM_005967	exon2	c.G615C	p.S205S	TGGCTCGCCCCCC	.	46	10	55	0	.	6	6	0	0	0
NAB2	4665	bcgsc.ca	37	12	57485446	57485446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	NAB2-92	NM_005967	exon2	c.T622C	p.F208L	CCCCCCTTCTCCC	.	50	19	61	0	.	6	6	0	0	0
ANAPC7	51434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110813921	110813921	+	Silent	SNP	T	T	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ANAPC7-226	NM_016238	exon10	c.A1560G	p.V520V	GACAGCTACAAGG	.	75	14	76	0	.	51	40	11	0	0
BRAP	8315	bcgsc.ca	37	12	112098449	112098449	+	Silent	SNP	G	G	C	rs201734278		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	BRAP-710	NM_006768	exon7	c.C927G	p.P309P	TGGCTCGGGCGTT	.	149	28	201	1	G|0.999;C|0.001	2	2	0	0	0
DNAH10	196385	hgsc.bcm.edu	37	12	124414245	124414245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	DNAH10-95	NM_207437	exon71	c.A12197G	p.K4066R	TAACGAAAGCCTT	.	28	2	36	0	.	1	1	0	0	0
SHISA2	387914	hgsc.bcm.edu	37	13	26625047	26625047	+	Silent	SNP	G	G	A	rs4770911		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	SHISA2-69	NM_001007538	exon1	c.C67T	p.L23L	CAGCCAGCAGCAG	.	4	3	2	0	G|0.870;A|0.130	0	0	0	0	0
MYO16	23026	hgsc.bcm.edu	37	13	109792825	109792825	+	Missense_Mutation	SNP	C	C	T	rs199777754		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	MYO16-142	NM_001198950	exon32	c.C4265T	p.A1422V	CGGCGGCGCCTCC	.	12	10	4	1	.	0	0	0	0	0
MAP1A	4130	bcgsc.ca	37	15	43821989	43821989	+	Missense_Mutation	SNP	A	A	C	rs200714150		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	MAP1A-141	NM_002373	exon5	c.A8177C	p.D2726A	GGAATGACCCTGC	.	67	28	88	6	A|0.999;C|0.001	1	1	0	0	0
SQRDL	58472	bcgsc.ca	37	15	45968443	45968443	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	SQRDL-91	NM_021199	exon6	c.C799G	p.R267G	GAAGTCCGAGCCG	.	124	38	199	1	.	27	27	0	0	0
DMXL2	23312	bcgsc.ca	37	15	51766637	51766637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	DMXL2-99	NM_001174116	exon28	c.G7117T	p.A2373S	GGGCTGCAAGCCG	.	58	27	68	0	.	0	0	0	0	0
CCNB2	9133	bcgsc.ca	37	15	59406999	59406999	+	Missense_Mutation	SNP	T	T	G	rs200615810		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	CCNB2-226	NM_004701	exon5	c.T521G	p.V174G	GGCTGGTACAAGT	.	249	66	265	11	.	2	2	0	0	0
TRIP4	9325	hgsc.bcm.edu	37	15	64692969	64692969	+	Silent	SNP	T	T	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	TRIP4-188	NM_016213	exon5	c.T646C	p.L216L	GATATTTTACAGC	.	32	2	30	0	.	7	7	0	0	0
AKAP13	11214	bcgsc.ca	37	15	86287035	86287035	+	Missense_Mutation	SNP	A	A	C	rs79101360		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	AKAP13-258	NM_006738	exon36	c.A8383C	p.T2795P	AACAAAACCAGCC	.	50	23	81	4	.	4	3	1	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2164808	2164808	+	Missense_Mutation	SNP	C	C	T	rs55931801		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PKD1-91	NM_000296	exon11	c.G2216A	p.R739Q	GGGGCCCGGGGAC	.	2	2	1	1	T|1.000;|0.000	12	0	12	0	0
MYLK3	91807	bcgsc.ca	37	16	46744687	46744687	+	Missense_Mutation	SNP	G	G	A	rs200890698		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	MYLK3-374	NM_182493	exon11	c.C2129T	p.S710F	AATGGGGACAAGC	.	180	58	249	4	.	0	0	0	0	0
FLII	2314	hgsc.bcm.edu	37	17	18154306	18154306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	FLII-91	NM_002018	exon14	c.T1622C	p.L541P	CAGTTGAGGGAGC	.	50	3	77	1	.	68	68	0	0	0
ITGB3	3690	hgsc.bcm.edu	37	17	45361999	45361999	+	Missense_Mutation	SNP	C	C	A	rs202100960		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ITGB3-714	NM_000212	exon4	c.C552A	p.D184E	TGTGGACAAGCCT	.	281	15	247	0	.	24	22	2	0	0
SPATA20	64847	bcgsc.ca	37	17	48628511	48628511	+	Silent	SNP	C	C	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	SPATA20-90	NM_022827	exon12	c.C1536A	p.P512P	TCGGCCCAAGCCG	.	26	7	59	0	.	44	43	1	0	0
HELZ	9931	hgsc.bcm.edu	37	17	65212033	65212033	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	HELZ-92	NM_014877	exon5	c.G229C	p.D77H	CTTCATCAGCTTG	.	32	2	9	0	.	3	3	0	0	0
FADS6	283985	hgsc.bcm.edu	37	17	72878831	72878831	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	FADS6-22	NM_178128	exon3	c.G367C	p.A123P	TGAAGGCTGTGCA	.	34	2	20	0	.	0	0	0	0	0
FOXK2	3607	hgsc.bcm.edu	37	17	80559303	80559303	+	Silent	SNP	C	C	A	rs201366286	alternate_allele	TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	FOXK2-226	NM_004514	exon9	c.C1911A	p.G637G	AGACGGCGAGGGC	.	60	3	84	0	C|0.999;T|0.001	14	14	0	0	0
POTEC	388468	bcgsc.ca	37	18	14533088	14533088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	POTEC-3	NM_001137671	exon5	c.G1027A	p.E343K	CATACTCTCTGGC	.	400	49	308	0	.	0	0	0	0	0
SBNO2	22904	hgsc.bcm.edu	37	19	1122146	1122146	+	Missense_Mutation	SNP	C	C	G	rs192343149		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	.	NM_014963	exon11	c.G1141C	p.E381Q	CGCCCTCGAAGGC	.	5	2	3	1	C|0.999;G|0.001	0	0	0	0	0
DOT1L	84444	hgsc.bcm.edu	37	19	2193778	2193778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	DOT1L-132	NM_032482	exon6	c.C584T	p.A195V	AGTATGCGGAGGT	.	37	2	91	0	.	0	0	0	0	0
PTPRS	5802	hgsc.bcm.edu	37	19	5220167	5220167	+	Splice_Site	SNP	T	T	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PTPRS-357	NM_002850	exon23	c.3550-2A>T	.	ATGAGCTGCGGGA	.	41	3	42	0	.	0	0	0	0	0
DNMT1	1786	bcgsc.ca	37	19	10270719	10270719	+	Missense_Mutation	SNP	C	C	G	rs201945078		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	DNMT1-660	NM_001130823	exon15	c.G1064C	p.R355P	TTGGCGCGAGCCA	.	133	29	186	1	.	5	5	0	0	0
CDC37	11140	bcgsc.ca	37	19	10506724	10506724	+	Silent	SNP	G	G	C	rs140896014	byfrequency;alternate_allele	TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	CDC37-522	NM_007065	exon2	c.C258G	p.A86A	TGCCTCGGCCTGC	.	170	50	222	1	G|0.999;A|0.001	82	81	1	0	0
C19orf44	84167	bcgsc.ca	37	19	16614154	16614154	+	Missense_Mutation	SNP	C	C	G	rs202132782		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	C19orf44-90	NM_032207	exon3	c.C1038G	p.D346E	TGTGGACGAGCCA	.	67	30	115	2	.	1	1	0	0	0
GDF15	9518	bcgsc.ca	37	19	18499106	18499106	+	Silent	SNP	A	A	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	GDF15-650	NM_004864	exon2	c.A288G	p.G96G	GCTGGGATCCGGC	.	55	13	96	0	.	1	1	0	0	0
PHLDB3	653583	hgsc.bcm.edu	37	19	43991217	43991217	+	Missense_Mutation	SNP	C	C	T	rs138387298		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PHLDB3-68	NM_198850	exon10	c.G1208A	p.S403N	CTCTGGCTCCCCC	.	11	4	3	2	C|0.997;T|0.003	0	0	0	0	0
PVRL2	5819	bcgsc.ca	37	19	45381871	45381871	+	Silent	SNP	T	T	C	rs199691943		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PVRL2-90	NM_002856	exon6	c.T1434C	p.Y478Y	AGTTTATGTGTGA	.	74	5	63	0	T|0.999;C|0.001	29	29	0	0	0
AP2A1	160	broad.mit.edu	37	19	50305818	50305818	+	Silent	SNP	C	C	T	rs200480269		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	AP2A1-92	NM_014203	exon16	c.C2142T	p.S714S	CGAGAGCCCCATG	.	20	3	30	0	C|1.000;T|0.000	0	0	0	0	0
PNKP	11284	bcgsc.ca	37	19	50370425	50370425	+	Missense_Mutation	SNP	C	C	G	rs201218221		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PNKP-253	NM_007254	exon2	c.G37C	p.E13Q	GGCTCTCGAGCCA	.	40	24	65	1	.	10	10	0	0	0
ZSCAN18	65982	bcgsc.ca	37	19	58600106	58600106	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ZSCAN18-90	NM_001145542	exon3	c.A670C	p.S224R	TGGGGCTCGCGAG	.	55	26	89	1	.	8	8	0	0	0
PLB1	151056	hgsc.bcm.edu	37	2	28772929	28772929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PLB1-141	NM_001170585	exon16	c.A1094G	p.Q365R	GACTGCAGAAACC	.	33	2	40	0	.	0	0	0	0	0
GALM	130589	bcgsc.ca	37	2	38908566	38908566	+	Missense_Mutation	SNP	C	C	A	rs74917735		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	GALM-90	NM_138801	exon3	c.C490A	p.Q164K	AGAGCACAAGCCA	.	130	41	180	1	.	106	100	6	0	0
ABCG5	64240	hgsc.bcm.edu	37	2	44049984	44049984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ABCG5-92	NM_022436	exon10	c.T1415C	p.L472P	AAGGGGAGGACGT	.	51	3	56	0	.	0	0	0	0	0
ANKRD30BL	554226	bcgsc.ca	37	2	133014537	133014537	+	RNA	SNP	G	G	C	rs202204698		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	.	.	.	.	.	CTCGGGGAGAAAC	.	43	8	50	1	G|0.994;C|0.006	0	0	0	0	0
SLC16A14	151473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	230910735	230910735	+	Silent	SNP	G	G	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	SLC16A14-96	NM_152527	exon4	c.C1107T	p.I369I	GCCCAGGATCACT	.	105	23	101	1	.	1	0	1	0	0
AGAP1	116987	hgsc.bcm.edu	37	2	236839507	236839507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	AGAP1-93	NM_001037131	exon12	c.G1423A	p.V475I	TACTCAGTCTCCA	.	51	3	77	0	.	8	8	0	0	0
PTPRT	11122	bcgsc.ca	37	20	40710579	40710579	+	Silent	SNP	G	G	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PTPRT-664	NM_133170	exon31	c.C4272T	p.D1424D	GAACACGTCAATG	.	145	7	88	1	.	0	0	0	0	0
RIMS4	140730	bcgsc.ca	37	20	43384935	43384935	+	Missense_Mutation	SNP	C	C	G	rs199569233		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	RIMS4-94	NM_001205317	exon6	c.G653C	p.R218P	AGCACGCGAGCCA	.	76	32	82	0	.	0	0	0	0	0
KCNE2	9992	hgsc.bcm.edu	37	21	35743147	35743147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KCNE2-68	NM_172201	exon2	c.T370C	p.X124R	TCCCCCTGATAAG	.	47	3	55	0	.	2	2	0	0	0
BAIAP2L2	80115	ucsc.edu	37	22	38483204	38483204	+	Missense_Mutation	SNP	C	C	T	rs201090429		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	BAIAP2L2-91	NM_025045	exon11	c.G1186A	p.V396M	GGGTCACGGGGGT	.	43	1	65	0	C|0.997;T|0.003	31	31	0	0	0
KCNH8	131096	hgsc.bcm.edu;broad.mit.edu	37	3	19389246	19389246	+	Silent	SNP	G	G	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KCNH8-524	NM_144633	exon5	c.G600A	p.P200P	ATTTCCGGAGTAT	.	121	7	91	0	.	0	0	0	0	0
KIAA2018	205717	hgsc.bcm.edu	37	3	113376113	113376113	+	Silent	SNP	C	C	T	rs62265537		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KIAA2018-93	NM_001009899	exon7	c.G4416A	p.Q1472Q	CTGTTGCTGCTGC	.	43	4	34	0	.	1	1	0	0	0
AP2M1	1173	bcgsc.ca	37	3	183898702	183898702	+	Silent	SNP	T	T	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	AP2M1-90	NM_001025205	exon5	c.T489G	p.G163G	AGAGGGTATCAAG	.	288	71	306	3	.	237	221	14	1	1
KIAA0226	9711	bcgsc.ca	37	3	197410204	197410204	+	Missense_Mutation	SNP	C	C	A	rs80094312		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KIAA0226-22	NM_014687	exon13	c.G1954T	p.V652F	CCGGGACAAGCCA	.	104	50	132	8	C|0.999;A|0.001	0	0	0	0	0
LMLN	89782	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	197687183	197687183	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	LMLN-91	NM_001136049	exon1	c.T91A	p.W31R	TGGCGCTGGAGCG	.	97	19	136	0	.	1	1	0	0	0
ANAPC4	29945	bcgsc.ca	37	4	25398292	25398292	+	Silent	SNP	G	G	C	rs34015658	byfrequency;alternate_allele	TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ANAPC4-293	NM_013367	exon15	c.G1068C	p.S356S	TGGCTCGGAGTCT	.	58	19	78	1	G|0.963;A|0.037	0	0	0	0	0
SLC10A7	84068	hgsc.bcm.edu	37	4	147363940	147363940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	SLC10A7-22	NM_032128	exon5	c.T430C	p.F144L	CCAAAAAACTTCC	.	40	2	22	0	.	0	0	0	0	0
CMYA5	202333	bcgsc.ca	37	5	79029464	79029464	+	Missense_Mutation	SNP	G	G	A	rs74757618		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	CMYA5-77	NM_153610	exon2	c.G4876A	p.D1626N	AAGAAAGACAAGC	.	117	26	151	2	.	0	0	0	0	0
CMYA5	202333	bcgsc.ca	37	5	79029466	79029466	+	Missense_Mutation	SNP	C	C	A	rs79207557		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	CMYA5-77	NM_153610	exon2	c.C4878A	p.D1626E	GAAAGACAAGCCA	.	122	40	154	4	.	0	0	0	0	0
BRD8	10902	bcgsc.ca	37	5	137503737	137503737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	BRD8-91	NM_001164326	exon10	c.G892T	p.G298C	GGTGGCCAGAAGC	.	121	44	200	2	.	3	3	0	0	0
NRG2	9542	hgsc.bcm.edu	37	5	139422525	139422525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	NRG2-526	NM_013982	exon1	c.G130A	p.G44S	TGCTGCCGCTCTC	.	5	2	6	1	.	0	0	0	0	0
DND1	373863	hgsc.bcm.edu	37	5	140051086	140051086	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	DND1-90	NM_194249	exon4	c.G854A	p.W285X	CGGTGCCAGCCAG	.	21	4	28	1	.	8	8	0	0	0
FAT2	2196	bcgsc.ca	37	5	150948147	150948147	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	FAT2-96	NM_001447	exon1	c.A346C	p.T116P	TGAGGGTGTAGCT	.	215	64	228	15	.	0	0	0	0	0
VWA7	80737	bcgsc.ca	37	6	31733787	31733787	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	.	NM_025258	exon16	c.A2372G	p.E791G	GGGACCTCCAGCC	.	192	30	363	1	.	14	14	0	0	0
C6orf222	389384	bcgsc.ca	37	6	36294451	36294451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	C6orf222-93	NM_001010903	exon5	c.C872A	p.T291K	AGGCTTGTCTTTT	.	233	26	262	0	.	0	0	0	0	0
PIM1	5292	bcgsc.ca	37	6	37139029	37139029	+	Silent	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PIM1-1493	NM_001243186	exon4	c.C642G	p.P214P	GAGGCCCGAGCCG	.	220	57	345	1	.	11	10	1	0	0
KCNK5	8645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39161945	39161945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KCNK5-227	NM_003740	exon4	c.G634A	p.G212S	ACTCACCGGCCAC	.	78	20	65	0	.	1	0	1	0	0
YIPF3	25844	hgsc.bcm.edu	37	6	43481182	43481182	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	YIPF3-90	NM_015388	exon5	c.C449G	p.A150G	TCACCTGCAATTT	.	53	3	50	0	.	0	0	0	0	0
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	46658247	46658247	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	TDRD6-138	NM_001168359	exon1	c.C2382G	p.N794K	CAGGAACATACAA	.	79	10	74	0	.	0	0	0	0	0
ULBP1	80329	bcgsc.ca	37	6	150290454	150290454	+	Nonsense_Mutation	SNP	G	G	T	rs75999880		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ULBP1-91	NM_025218	exon3	c.G583T	p.E195X	TGGCTTGAAGAAT	.	157	37	176	0	.	0	0	0	0	0
PDK4	5166	bcgsc.ca	37	7	95216415	95216415	+	Missense_Mutation	SNP	C	C	A	rs200015612		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PDK4-358	NM_002612	exon10	c.G1002T	p.L334F	AATTGGCAAGCCG	.	40	22	57	2	C|0.998;A|0.002	121	110	11	0	0
FBXO24	26261	bcgsc.ca	37	7	100192051	100192051	+	Missense_Mutation	SNP	A	A	C	rs200752657		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	FBXO24-229	NM_012172	exon6	c.A953C	p.D318A	AGCTTGACCAGCC	.	104	34	120	0	.	0	0	0	0	0
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	68995502	68995502	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PREX2-390	NM_025170	exon18	c.A1906T	p.I636F	AAAAAGATTTTTG	.	78	6	58	0	.	1	1	0	0	0
DEPTOR	64798	bcgsc.ca	37	8	120977570	120977570	+	Missense_Mutation	SNP	T	T	G	rs201433054		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	DEPTOR-227	NM_022783	exon4	c.T524G	p.V175G	GGCTGGTTCAGGA	.	98	37	124	6	.	6	6	0	0	0
ASPN	54829	hgsc.bcm.edu	37	9	95237063	95237063	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ASPN-514	NM_001193335	exon2	c.T117A	p.D39E	ATCATCATCATCT	.	44	5	40	1	.	0	0	0	0	0
FAM120A	23196	bcgsc.ca	37	9	96326681	96326681	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	FAM120A-90	NM_014612	exon18	c.G3216C	p.R1072S	CGCCAGGGCCCCC	.	98	27	142	0	.	18	18	0	0	0
SLC25A25	114789	bcgsc.ca	37	9	130854243	130854243	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	SLC25A25-90	NM_001006642	exon1	c.A94C	p.T32P	AGAGGCACCCCAG	.	202	45	326	4	.	0	0	0	0	0
ZER1	10444	hgsc.bcm.edu	37	9	131515582	131515582	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ZER1-91	NM_006336	exon4	c.G607C	p.A203P	CCAAGGCAGCCAG	.	35	2	35	0	.	24	24	0	0	0
OBP2B	29989	hgsc.bcm.edu	37	9	136083879	136083879	+	Missense_Mutation	SNP	C	C	G	rs28584111		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	OBP2B-68	NM_014581	exon2	c.G183C	p.K61N	TTCCAACTTCCCA	.	55	3	58	1	.	1	0	1	0	0
PCDH19	57526	hgsc.bcm.edu	37	X	99661616	99661616	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PCDH19-110	NM_001184880	exon1	c.C1980G	p.I660M	CAAGTAGATTAGG	.	24	2	23	0	.	0	0	0	0	0
PRRG3	79057	hgsc.bcm.edu	37	X	150869296	150869296	+	Silent	SNP	C	C	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PRRG3-134	NM_024082	exon4	c.C487A	p.R163R	CCCAGTCGGGGGG	.	27	2	43	0	.	0	0	0	0	0
FATE1	89885	bcgsc.ca	37	X	150891105	150891105	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	FATE1-131	NM_033085	exon5	c.T426G	p.Y142X	GCTGTATGCAGTC	.	98	4	82	0	.	0	0	0	0	0
USP19	10869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	49148785	49148785	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	USP19-663	NM_001199161	exon22	c.3231delG	p.G1077fs	.	.	105	20	96	0	.	0	0	0	0	0
CLIP1	6249	broad.mit.edu	37	12	122812690	122812691	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	CLIP1-155	NM_001247997	exon17	c.3053_3054insA	p.S1018fs	TTGTGGCTTGTTT	.	191	12	203	0	.	0	0	0	0	0
KCNE1L	23630	bcgsc.ca	37	X	108868162	108868163	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KCNE1L-130	NM_012282	exon1	c.G87T	p.LG29FC	AGCGCCCAAGCCG	.	12	8	34	4	.	0	0	0	0	0