Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19181066	19181066	+	Missense_Mutation	SNP	C	C	T	rs201197024		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	TAS1R2-93	NM_152232	exon3	c.G898A	p.A300T	CGGAGGCGATCCA	.	64	21	84	0	C|1.000;T|0.000	0	0	0	0	0
SLC35D1	23169	hgsc.bcm.edu	37	1	67515474	67515474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SLC35D1-90	NM_015139	exon6	c.T524C	p.V175A	GCAGCTACAAAGG	.	30	2	46	0	.	0	0	0	0	0
ZNF644	84146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	91406116	91406116	+	Silent	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	ZNF644-155	NM_201269	exon3	c.C795T	p.F265F	TTGAATGAACTCT	.	144	57	102	0	.	15	8	7	0	0
KCND3	3752	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	112524716	112524716	+	Silent	SNP	C	C	T	rs35131566	byfrequency;alternate_allele	TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	KCND3-155	NM_004980	exon2	c.G633A	p.P211P	GCTGCCCGGGACC	.	34	13	60	0	C|0.999;A|0.001	10	3	7	0	0
YY1AP1	55249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155638446	155638446	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	YY1AP1-93	NM_001198903	exon8	c.T1265A	p.M422K	CTGTTCATGTTGA	.	149	46	197	0	.	60	36	24	0	0
PVRL4	81607	hgsc.bcm.edu;bcgsc.ca	37	1	161049405	161049405	+	Silent	SNP	C	C	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	PVRL4-92	NM_030916	exon2	c.G414A	p.Q138Q	CCGCGCCTGGAAG	.	23	10	44	0	.	0	0	0	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	17127627	17127627	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CUBN-166	NM_001081	exon16	c.A2079C	p.Q693H	GAAGCCTTGGTCA	.	180	69	227	1	.	2	2	0	0	0
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	63852307	63852307	+	Silent	SNP	C	C	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	ARID5B-94	NM_032199	exon10	c.C3085A	p.R1029R	AAGGCCCGGGCAG	.	131	44	184	0	.	27	11	16	0	0
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	48181586	48181586	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	PTPRJ-541	NM_002843	exon22	c.T3543A	p.D1181E	CAGAGATTTCACA	.	145	56	160	0	.	69	32	37	0	0
CAPN1	823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64974118	64974118	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CAPN1-91	NM_001198869	exon13	c.T1538G	p.F513C	TGCGCTTCTTCTC	.	53	12	57	0	.	714	366	348	0	0
MALAT1	378938	ucsc.edu;bcgsc.ca	37	11	65271872	65271872	+	RNA	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	.	.	.	.	.	TTCTGATCCCGCT	.	49	19	52	0	.	23	10	13	0	0
RNF26	79102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119206410	119206410	+	Missense_Mutation	SNP	G	G	A	rs200033048		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	RNF26-227	NM_032015	exon1	c.G578A	p.S193N	TTTCCAGCAGTGC	.	69	28	72	0	G|0.999;A|0.001	36	20	16	0	0
H2AFJ	55766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	14927594	14927594	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	H2AFJ-69	NM_177925	exon1	c.C190G	p.L64V	GAGATCCTGGAGC	.	105	36	139	0	.	173	97	76	0	0
MRPS35	60488	hgsc.bcm.edu	37	12	27877051	27877051	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	MRPS35-90	NM_001190864	exon5	c.G454C	p.D152H	GAAATTGACAGCA	.	38	2	70	0	.	70	70	0	0	0
CPM	1368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	69326479	69326479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CPM-650	NM_001005502	exon2	c.A139T	p.S47C	CAATACTGTGTAA	.	104	53	108	0	.	85	45	40	0	0
DUSP6	1848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	89744677	89744677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	DUSP6-846	NM_001946	exon2	c.T526C	p.S176P	AGGAAGAGTCAGA	.	63	28	72	0	.	156	98	58	0	0
PRPF39	55015	hgsc.bcm.edu	37	14	45579918	45579918	+	Silent	SNP	A	A	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	PRPF39-70	NM_017922	exon10	c.A1470G	p.E490E	TAATGAATCTTCA	.	11	6	10	1	.	31	14	17	0	0
ABCD4	5826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	74756774	74756774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	ABCD4-292	NM_005050	exon13	c.C1375A	p.L459M	GTGGCAGGAATAG	.	105	36	147	0	.	28	13	15	0	0
GABRG3	2567	hgsc.bcm.edu	37	15	27271931	27271931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	.	NM_001270873	exon3	c.A233G	p.Y78C	ACATTTATGTTAA	.	37	2	47	0	.	2	2	0	0	0
FSIP1	161835	hgsc.bcm.edu	37	15	40034075	40034075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	FSIP1-517	NM_152597	exon6	c.T586C	p.F196L	AGGAAAAGGTGTC	.	24	2	49	0	.	2	2	0	0	0
PPIB	5479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64454355	64454355	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	PPIB-90	NM_000942	exon3	c.136-2A>G	.	TACACCTGAGGAA	.	187	80	220	0	.	2	0	2	0	0
ULK3	25989	hgsc.bcm.edu	37	15	75132966	75132966	+	Silent	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	ULK3-290	NM_001099436	exon5	c.A486G	p.Q162Q	CATGTGTTGTGCG	.	37	3	80	0	.	30	30	0	0	0
GPR97	222487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57719830	57719830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	GPR97-91	NM_170776	exon11	c.C1532T	p.S511F	TCAACTCCTTGCA	.	120	52	187	0	.	0	0	0	0	0
KIFC3	3801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57806198	57806198	+	Silent	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	KIFC3-91	NM_001130100	exon4	c.A318G	p.V106V	GTGTTCTACCTGT	.	79	31	99	0	.	1	0	1	0	0
GSE1	23199	hgsc.bcm.edu	37	16	85706125	85706125	+	Silent	SNP	C	C	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	.	NM_014615	exon16	c.C3634T	p.L1212L	GGCTACCTGAAGG	.	40	2	62	0	.	46	45	0	1	0
MYO1C	4641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	1370772	1370772	+	Splice_Site	SNP	A	A	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	MYO1C-90	NM_033375	exon31	c.2960+2T>G	.	CGCCTCACCTGCC	.	82	36	81	0	.	10	0	10	0	0
LUC7L3	51747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48818486	48818486	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	LUC7L3-90	NM_006107	exon4	c.T230C	p.M77T	GTTTCATGAAAGT	.	310	87	306	0	.	94	67	27	0	0
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	57724783	57724783	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CLTC-835	NM_004859	exon3	c.A275T	p.N92I	TTTTTAACATTGA	.	91	28	87	0	.	297	212	85	0	0
BAHCC1	57597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79425869	79425869	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	BAHCC1-23	.	.	.	.	CTGCTGGAAAGCT	.	38	9	38	0	.	6	4	2	0	0
SUGP1	57794	hgsc.bcm.edu	37	19	19387814	19387814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SUGP1-91	NM_172231	exon13	c.A1853G	p.E618G	TCATACTCGTCGT	.	36	2	52	0	.	34	34	0	0	0
TBCB	1155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36606528	36606528	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	TBCB-90	NM_001281	exon1	c.C66G	p.F22L	CACCTTCCGCTCC	.	28	10	43	0	.	181	102	79	0	0
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42795453	42795453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CIC-591	NM_015125	exon10	c.G2533A	p.A845T	GCACCAGCCCCTG	.	45	19	64	0	.	52	31	21	0	0
MYH14	79784	broad.mit.edu;ucsc.edu	37	19	50783389	50783389	+	Silent	SNP	C	C	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	MYH14-23	NM_001145809	exon31	c.C4128T	p.H1376H	GCTGCACGATGCC	.	9	3	11	0	.	0	0	0	0	0
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	21251317	21251317	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	APOB-175	NM_000384	exon13	c.C1711T	p.Q571X	CTGCCTGTGAAGG	.	144	55	179	0	.	0	0	0	0	0
ITGA6	3655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	173352903	173352903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	ITGA6-227	NM_000210	exon19	c.C2452A	p.Q818K	GGCGAGCAAGCTA	.	115	46	159	0	.	143	65	78	0	0
TUBB1	81027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57597910	57597910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	TUBB1-227	NM_030773	exon2	c.T68C	p.M23T	GGGAGATGATTGG	.	88	51	82	0	.	0	0	0	0	0
RIPK4	54101	broad.mit.edu	37	21	43166867	43166867	+	Silent	SNP	G	G	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	RIPK4-947	NM_020639	exon5	c.C738G	p.P246P	GCACACGGGCGGC	.	135	4	232	0	.	60	58	2	0	0
SLC37A1	54020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43963563	43963563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SLC37A1-90	NM_018964	exon9	c.G581A	p.G194E	TTATGGGGGTCTG	.	243	75	320	0	.	19	10	9	0	0
KLHL40	131377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	42727131	42727131	+	Silent	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	.	NM_152393	exon1	c.G21A	p.Q7Q	GGAGCAGGCGGAG	.	16	8	22	0	.	0	0	0	0	0
HTR3D	200909	ucsc.edu	37	3	183756414	183756414	+	Splice_Site	SNP	T	T	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	HTR3D-90	NM_182537	exon5	c.610+2T>A	.	GCCCGGTGAGGGA	.	23	4	22	0	.	0	0	0	0	0
HERC5	51191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89410409	89410409	+	Silent	SNP	C	C	G	rs141289100	byfrequency;alternate_allele	TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	HERC5-664	NM_016323	exon16	c.C2055G	p.V685V	AACAGTCAGAAGG	.	220	98	259	0	C|1.000;T|0.000	14	3	11	0	0
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126411930	126411930	+	Silent	SNP	C	C	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	FAT4-108	NM_024582	exon17	c.C13953A	p.I4651I	TTCAATCCAGAGG	.	73	32	85	0	.	18	9	9	0	0
NSUN2	54888	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	6620336	6620336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	NSUN2-91	NM_017755	exon7	c.G698A	p.S233N	CAGGGGCTGCTCA	.	144	9	151	0	.	26	26	0	0	0
FCHO2	115548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	72378596	72378596	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	FCHO2-23	NM_138782	exon24	c.A2189C	p.E730A	ATGCAGAACAAAT	.	14	9	25	0	.	0	0	0	0	0
AP3B1	8546	hgsc.bcm.edu	37	5	77406161	77406161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	AP3B1-90	NM_003664	exon20	c.A2267G	p.E756G	TCCTTCTCCCCAT	.	20	2	30	0	.	24	23	0	0	1
SLC12A2	6558	hgsc.bcm.edu	37	5	127419881	127419881	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SLC12A2-94	NM_001046	exon1	c.A235C	p.S79R	AGCCAGAGCCGTT	.	7	5	8	0	.	0	0	0	0	0
HSPA4	3308	hgsc.bcm.edu	37	5	132425377	132425377	+	Silent	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	HSPA4-226	NM_002154	exon11	c.T1368C	p.D456D	TCCAGATCCTGCT	.	22	2	20	0	.	0	0	0	0	0
CAMK2A	815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149644564	149644564	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CAMK2A-333	NM_171825	exon3	c.G172C	p.E58Q	CACGCTCCAGCTT	.	68	20	98	0	.	0	0	0	0	0
KIF13A	63971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	17796913	17796913	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	KIF13A-137	NM_001105567	exon23	c.A2929C	p.T977P	GCAGTGTTCTTGT	.	175	75	248	0	.	24	16	8	0	0
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56463337	56463337	+	Silent	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	DST-523	NM_015548	exon27	c.A3996G	p.A1332A	CTGTTCTGCTTTT	.	34	13	28	0	.	23	12	11	0	0
MPC1	51660	hgsc.bcm.edu	37	6	166778932	166778932	+	Silent	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	.	NM_001270879	exon5	c.A186G	p.K62K	TGCCGTTTTAGTC	.	24	2	37	0	.	1	1	0	0	0
TYW1	55253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	66514966	66514966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	TYW1-91	NM_018264	exon8	c.G1015T	p.G339C	AAGTCTGGTTTGT	.	92	18	70	0	.	55	42	13	0	0
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116423433	116423433	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	MET-5874	NM_001127500	exon19	c.T3762A	p.S1254R	CTATAGTGTACAC	.	105	62	74	0	.	445	132	313	0	0
SPAM1	6677	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	123599995	123599995	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SPAM1-94	NM_153189	exon5	c.T1502A	p.L501H	TGTTTCTTATCAT	.	97	54	50	0	.	0	0	0	0	0
SHH	6469	hgsc.bcm.edu	37	7	155595634	155595634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SHH-1134	NM_000193	exon3	c.A1349G	p.E450G	AGGGCCTCGCTGT	.	38	2	43	0	.	24	24	0	0	0
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	110420393	110420393	+	Silent	SNP	G	G	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	PKHD1L1-145	NM_177531	exon18	c.G1929C	p.G643G	GGATGGGATCGCT	.	58	12	60	0	.	0	0	0	0	0
VPS28	51160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145651588	145651588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	VPS28-90	NM_016208	exon3	c.C41A	p.P14H	TTCCCAGGGGCTG	.	13	8	27	0	.	2	2	0	0	0
CNTLN	54875	hgsc.bcm.edu	37	9	17394561	17394561	+	Silent	SNP	T	T	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CNTLN-91	NM_017738	exon15	c.T2109C	p.S703S	GAAATCTTTTGAG	.	27	2	19	0	.	8	8	0	0	0
FOCAD	54914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	20990148	20990148	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	.	NM_017794	exon44	c.T5031A	p.F1677L	GATATTTGCAACC	.	89	39	93	0	.	23	4	19	0	0
SMC5	23137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	72913102	72913102	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SMC5-229	NM_015110	exon9	c.G1274C	p.R425P	ATAAGCGAAGAGA	.	89	31	81	0	.	31	18	13	0	0
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	79981712	79981712	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	VPS13A-161	NM_001018038	exon61	c.A8395C	p.I2799L	GGACTGATTCCAG	.	42	20	39	0	.	17	9	8	0	0
PDCL	5082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	125582792	125582792	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	PDCL-90	NM_005388	exon4	c.C478T	p.Q160X	AAACCTGCTTGAA	.	162	56	232	0	.	29	20	9	0	0
SLC2A8	29988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130167105	130167105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SLC2A8-92	NM_014580	exon8	c.A985G	p.M329V	GTGGTCATGGTGT	.	64	14	98	0	.	1	0	1	0	0
KLHL34	257240	hgsc.bcm.edu	37	X	21675434	21675434	+	Missense_Mutation	SNP	A	A	G	rs145604187		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	KLHL34-131	NM_153270	exon1	c.T473C	p.L158S	TCCTGCAAGTGGC	.	8	5	3	1	A|0.996;G|0.004	1	1	0	0	0
NEDD4	4734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	56208931	56208934	+	Frame_Shift_Del	DEL	CATG	CATG	-	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	CATG	CATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	NEDD4-723	NM_198400	exon1	c.96_99del	p.32_33del	.	.	214	67	225	0	.	0	0	0	0	0
ZNF385B	151126	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	180310448	180310448	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	ZNF385B-23	NM_152520	exon8	c.924delA	p.K308fs	.	.	91	30	81	0	.	0	0	0	0	0
SON	6651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	34927198	34927198	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SON-97	NM_032195	exon3	c.5661delA	p.S1887fs	.	.	42	15	38	0	.	0	0	0	0	0
TOP2B	7155	broad.mit.edu	37	3	25678710	25678710	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	TOP2B-273	NM_001068	exon6	c.620delA	p.K207fs	ACCTGCTTAAAAC	.	5	2	7	0	.	0	0	0	0	0
ZNF318	24149	broad.mit.edu	37	6	43323502	43323502	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	ZNF318-157	NM_014345	exon4	c.1570delA	p.R524fs	GTCGCCTTTTTTC	.	438	7	517	0	.	0	0	0	0	0
VPS37D	155382	broad.mit.edu	37	7	73083913	73083921	+	Frame_Shift_Del	DEL	GCGACTGGG	GCGACTGGG	-	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	GCGACTGGG	GCGACTGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	VPS37D-68	NM_001077621	exon2	c.303_310del	p.101_104del	GCTGCAGCGACTG	.	8	3	14	0	.	0	0	0	0	0
GPR174	84636	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	78427128	78427128	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	GPR174-130	NM_032553	exon1	c.624delG	p.T208fs	.	.	151	60	101	0	.	0	0	0	0	0
CORO1A	11151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30198546	30198547	+	Splice_Site	INS	-	-	GA	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CORO1A-226	NM_007074	exon5	c.636+2->GA	.	.	.	74	21	102	0	.	0	0	0	0	0
OBSL1	23363	broad.mit.edu	37	2	220435527	220435528	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	OBSL1-71	NM_001173431	exon1	c.428_429insG	p.A143fs	ACCTCCGCCCCCC	.	6	2	15	0	.	0	0	0	0	0
NEK10	152110	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	27297798	27297799	+	Missense_Mutation	DNP	GA	GA	AT	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	NEK10-695	NM_199347	exon24	c.T2078A	p.I693N	TACAGGATTGTTC	.	25	8	33	0	.	0	0	0	0	0