Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA12 26154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 215876834 215876834 + Frame_Shift_Del DEL T T - novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 ABCA7 10347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1044699 1044699 + Missense_Mutation SNP G G A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 ADAM11 4185 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42854119 42854119 + Missense_Mutation SNP C C G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 AEBP1 165 hgsc.bcm.edu 37 7 44153693 44153693 + Missense_Mutation SNP A A G rs140163558 TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 AEBP1 165 hgsc.bcm.edu 37 7 44153704 44153704 + Silent SNP C C T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 AEBP1 165 hgsc.bcm.edu;ucsc.edu 37 7 44153688 44153688 + Missense_Mutation SNP G G A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 AEBP1 165 hgsc.bcm.edu;ucsc.edu 37 7 44153696 44153696 + Missense_Mutation SNP G G T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 ALDOB 229 hgsc.bcm.edu;ucsc.edu 37 9 104192206 104192207 + Frame_Shift_Ins INS - - TT novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 ANAPC1 64682 broad.mit.edu;hgsc.bcm.edu 37 2 112539971 112539971 + Missense_Mutation SNP C C G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 ANKRD34C 390616 hgsc.bcm.edu;ucsc.edu 37 15 79587076 79587085 + Frame_Shift_Del DEL TCTTGCTCTC TCTTGCTCTC - novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 TCTTGCTCTC TCTTGCTCTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 AP3B2 8120 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 83349701 83349701 + Frame_Shift_Del DEL T T - novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 ATXN2L 11273 broad.mit.edu;ucsc.edu 37 16 28847500 28847500 + Missense_Mutation SNP G A A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 ATXN3 4287 hgsc.bcm.edu;ucsc.edu 37 14 92537387 92537387 + Missense_Mutation SNP T T G rs12896588 bycluster;by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 ATXN3 4287 hgsc.bcm.edu;ucsc.edu 37 14 92537388 92537388 + Missense_Mutation SNP T T C rs12896589 bycluster;by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 BCL11A 53335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 60780394 60780394 + Silent SNP G G A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 BIRC6 57448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 32605236 32605236 + Missense_Mutation SNP T T C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 BMS1 9790 broad.mit.edu;hgsc.bcm.edu 37 10 43318590 43318590 + Missense_Mutation SNP G G C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 BRIP1 83990 broad.mit.edu;hgsc.bcm.edu 37 17 59820468 59820468 + Missense_Mutation SNP C C T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 C14orf39 317761 broad.mit.edu 37 14 60938407 60938407 + Missense_Mutation SNP T A A rs1956551 bycluster;alternate_allele TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 C16orf62 57020 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 19641134 19641134 + Missense_Mutation SNP C C G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 C19orf2 0 hgsc.bcm.edu 37 19 30500143 30500143 + Silent SNP T T C rs1127493 bycluster;byfrequency TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 C1orf101 257044 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 244715945 244715945 + Missense_Mutation SNP T T A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 C2orf27A 29798 broad.mit.edu;hgsc.bcm.edu 37 2 132509139 132509139 + Silent SNP C C T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 C3orf1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 119217644 119217644 + Missense_Mutation SNP G G C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 C5 727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 123719562 123719562 + Splice_Site SNP C C T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 CADM1 23705 hgsc.bcm.edu 37 11 115375030 115375035 + In_Frame_Del DEL AGCCGG AGCCGG - rs147879356 by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 AGCCGG AGCCGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 CATSPER4 378807 broad.mit.edu;ucsc.edu 37 1 26524568 26524568 + Silent SNP G A A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 CCND2 894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 4385304 4385304 + Missense_Mutation SNP C C G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 CCNJ 54619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 97810064 97810064 + Missense_Mutation SNP C C T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 CCPG1 9236 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 55669238 55669238 + Missense_Mutation SNP T T G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 CD101 9398 broad.mit.edu;ucsc.edu 37 1 117561137 117561137 + Missense_Mutation SNP G T T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 CENPL 91687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 173780412 173780412 + Nonsense_Mutation SNP G G C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 CFHR3 10878 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 196749100 196749100 + Missense_Mutation SNP G G T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 CHRNA9 55584 hgsc.bcm.edu 37 4 40356041 40356041 + Missense_Mutation SNP C C T rs55633891 bycluster;byfrequency;by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 CLASP1 23332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 122206531 122206531 + Silent SNP T T C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 CNOT2 4848 hgsc.bcm.edu 37 12 70747694 70747694 + Frame_Shift_Del DEL A A - rs35192504 TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 COASY 80347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40715086 40715086 + Missense_Mutation SNP C C T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 COL9A2 1298 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 40777201 40777201 + Frame_Shift_Del DEL G G - novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 CSF2RA 1438 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 1413322 1413322 + Missense_Mutation SNP G G T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 DNAH2 146754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7727491 7727491 + Missense_Mutation SNP G G C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 DRD3 1814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 113858457 113858457 + Missense_Mutation SNP C C G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 EFEMP2 30008 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65635794 65635794 + Missense_Mutation SNP C C T rs113167523 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 EIF2AK2 5610 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 37347219 37347219 + Missense_Mutation SNP C C G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 ENPP3 5169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 131971248 131971248 + Missense_Mutation SNP G G C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 ERBB4 2066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 212587123 212587123 + Missense_Mutation SNP C C A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 FAM47A 158724 broad.mit.edu 37 X 34148882 34148882 + Missense_Mutation SNP C T T rs5973089 byfrequency;by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 FCGR3B 2215 broad.mit.edu;hgsc.bcm.edu 37 1 161599725 161599725 + Silent SNP C C T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 FER1L6 654463 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 125052244 125052244 + Silent SNP A A T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 FERMT1 55612 broad.mit.edu;ucsc.edu 37 20 6069695 6069695 + Missense_Mutation SNP A C C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 FLJ43860 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 142444934 142444934 + Silent SNP T T C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 FSD1L 83856 broad.mit.edu;ucsc.edu 37 9 108223895 108223895 + Missense_Mutation SNP A G G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 GAP43 2596 broad.mit.edu;hgsc.bcm.edu 37 3 115395305 115395305 + Missense_Mutation SNP C C T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 HSPBP1 23640 broad.mit.edu 37 19 55790886 55790887 + In_Frame_Ins INS - GCCGCCGCC GCCGCCGCC rs3040014 bycluster;by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 IGSF10 285313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 151161389 151161389 + Silent SNP T T A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 IL25 64806 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23842465 23842465 + Missense_Mutation SNP C C A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 IQUB 154865 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123119948 123119948 + Silent SNP A A C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 KDM6A 7403 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 44879876 44879878 + In_Frame_Del DEL GGT GGT - novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 GGT GGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 KIAA1984 84960 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139697161 139697161 + Missense_Mutation SNP G G A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 KRTAP1-1 81851 broad.mit.edu 37 17 39197549 39197549 + Missense_Mutation SNP G C C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 KRTAP5-10 387273 hgsc.bcm.edu 37 11 71276939 71276939 + Silent SNP G G A rs111317671 TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 LETMD1 25875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 51449970 51449970 + Missense_Mutation SNP T T G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 LOC400759 0 broad.mit.edu 37 1 89875916 89875916 + RNA SNP C T T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 LOC440354 440354 broad.mit.edu 37 16 30278845 30278845 + RNA DEL A - - novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 LPHN3 23284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 62813877 62813877 + Missense_Mutation SNP G G A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 LRPPRC 10128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44209499 44209499 + Missense_Mutation SNP G G T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 LRRC43 254050 hgsc.bcm.edu 37 12 122685163 122685163 + Missense_Mutation SNP A A G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 LRRC43 254050 hgsc.bcm.edu 37 12 122685164 122685164 + Missense_Mutation SNP A A G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 LRRC43 254050 hgsc.bcm.edu 37 12 122685176 122685176 + Missense_Mutation SNP G G A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 LRRK2 120892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 40689408 40689408 + Missense_Mutation SNP C C A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 LTN1 26046 hgsc.bcm.edu;ucsc.edu 37 21 30339421 30339422 + Frame_Shift_Ins INS - - A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 MARCKS 4082 broad.mit.edu 37 6 114181210 114181210 + Frame_Shift_Del DEL A - - novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 MET 4233 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 116411638 116411638 + Silent SNP C C G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 MIOX 55586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50927866 50927867 + Frame_Shift_Ins INS - - C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 MLH3 27030 hgsc.bcm.edu;ucsc.edu 37 14 75513395 75513396 + Frame_Shift_Ins INS - - AT novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 MLL 4297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118390456 118390456 + Missense_Mutation SNP A A G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 MLLT3 4300 broad.mit.edu 37 9 20414343 20414343 + Silent SNP A G G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 MRGPRG 386746 hgsc.bcm.edu 37 11 3239798 3239798 + Silent SNP G G A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 MSLNL 401827 hgsc.bcm.edu 37 16 830786 830787 + Frame_Shift_Ins INS - - A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 MUC2 4583 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1092095 1092095 + Nonsense_Mutation SNP G G A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 MUC4 4585 hgsc.bcm.edu 37 3 195509563 195509563 + Missense_Mutation SNP A A T rs28605870 TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 MYO15A 51168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18055188 18055188 + Missense_Mutation SNP C C T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 NALCN 259232 broad.mit.edu;hgsc.bcm.edu 37 13 101717877 101717877 + Missense_Mutation SNP G G A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 NRXN2 9379 broad.mit.edu;ucsc.edu 37 11 64453329 64453329 + Missense_Mutation SNP A G G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 OCIAD2 132299 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 48887578 48887578 + Missense_Mutation SNP A A G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 OPHN1 4983 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 67413751 67413751 + Missense_Mutation SNP G G C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 OR2L8 391190 broad.mit.edu;hgsc.bcm.edu 37 1 248112361 248112361 + Frame_Shift_Del DEL A A - novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PARP14 54625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 122437546 122437546 + Missense_Mutation SNP G G T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52696199 52696199 + Frame_Shift_Del DEL C C - novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PCDH10 57575 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 134073481 134073481 + Missense_Mutation SNP T T G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PCSK9 255738 broad.mit.edu;hgsc.bcm.edu 37 1 55505552 55505553 + In_Frame_Ins INS - - CTG novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PDLIM2 64236 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 22452072 22452072 + Missense_Mutation SNP A A T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PDS5B 23047 hgsc.bcm.edu 37 13 33344580 33344580 + Frame_Shift_Del DEL A A - novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PDZD2 23037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 32090803 32090803 + Missense_Mutation SNP T T G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T T G T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PITPNM1 9600 broad.mit.edu;ucsc.edu 37 11 67265791 67265791 + Missense_Mutation SNP A C C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PKHD1L1 93035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110460595 110460595 + Silent SNP T T C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PLK1S1 55857 broad.mit.edu 37 20 21143043 21143043 + Missense_Mutation SNP G A A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PORCN 64840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 48378842 48378842 + Missense_Mutation SNP T T G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 POU6F2 11281 broad.mit.edu 37 7 39500265 39500265 + Missense_Mutation SNP G T T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PPP6R1 22870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55752433 55752436 + Frame_Shift_Del DEL ATGG ATGG - novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 ATGG ATGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PRG4 23572 hgsc.bcm.edu 37 1 186276284 186276286 + In_Frame_Del DEL CTC CTC - novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 CTC CTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PRICKLE1 144165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 42853975 42853975 + Missense_Mutation SNP T T G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PROS1 5627 broad.mit.edu 37 3 93643084 93643084 + Missense_Mutation SNP C T T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PRRC2B 84726 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 134350077 134350077 + Missense_Mutation SNP C C T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PTPRM 5797 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 7955120 7955120 + Missense_Mutation SNP A A T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 PUM1 9698 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 31447563 31447563 + Missense_Mutation SNP C C T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 RANBP6 26953 broad.mit.edu;hgsc.bcm.edu 37 9 6013478 6013478 + Missense_Mutation SNP T T G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 RFX8 731220 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 102019046 102019047 + Frame_Shift_Ins INS - - A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 RGMA 56963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 93616253 93616253 + Missense_Mutation SNP G G C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 RHOJ 57381 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 63735887 63735887 + Splice_Site SNP G G C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 RMND1 55005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 151726969 151726969 + Silent SNP G G T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 SAAL1 113174 hgsc.bcm.edu 37 11 18127558 18127559 + In_Frame_Ins INS - - CGG novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 SC4MOL 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 166254730 166254730 + Frame_Shift_Del DEL T T - novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 SCN4A 6329 broad.mit.edu;hgsc.bcm.edu 37 17 62029159 62029159 + Silent SNP G G T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 SCRN1 9805 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 29980329 29980330 + Frame_Shift_Ins INS - - C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 SEC14L5 9717 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 5040871 5040871 + Missense_Mutation SNP A A G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 SEMA3B 7869 hgsc.bcm.edu 37 3 50310781 50310781 + Missense_Mutation SNP C C T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 SHROOM4 57477 hgsc.bcm.edu 37 X 50350758 50350759 + In_Frame_Ins INS - - TGCTGCTGCTGT novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 SLC15A3 51296 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60711236 60711236 + Silent SNP G G A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 SLC5A12 159963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 26695022 26695022 + Frame_Shift_Del DEL A A - novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 SP1 6667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53776832 53776832 + Silent SNP T T G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 SPATA17 128153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 217947704 217947704 + Missense_Mutation SNP G G T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 SRGAP2 23380 broad.mit.edu;hgsc.bcm.edu 37 1 206516309 206516309 + Missense_Mutation SNP A A G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 TBC1D22B 55633 hgsc.bcm.edu 37 6 37250060 37250060 + Missense_Mutation SNP G G A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 TBC1D3 729873 hgsc.bcm.edu 37 17 36294433 36294434 + Frame_Shift_Ins INS - - C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 TBP 6908 hgsc.bcm.edu 37 6 170871043 170871043 + Silent SNP G G A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 TBP 6908 hgsc.bcm.edu 37 6 170871055 170871055 + Silent SNP G G A rs112928724 TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 TBP 6908 hgsc.bcm.edu 37 6 170871097 170871097 + Silent SNP G G A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 TCHH 7062 hgsc.bcm.edu 37 1 152084694 152084696 + In_Frame_Del DEL CTC CTC - novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 CTC CTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 TMEM26 219623 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 63212753 63212753 + Missense_Mutation SNP C C A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 TMTC3 160418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 88560118 88560118 + Missense_Mutation SNP C C T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 TMTC3 160418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 88584363 88584363 + Frame_Shift_Del DEL G G - novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 TRIM11 81559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 228582654 228582654 + Missense_Mutation SNP A A T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 TRMT2B 79979 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 100297051 100297051 + Silent SNP T T C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 TTC3 7267 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 38539860 38539860 + Missense_Mutation SNP T T A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179569401 179569401 + Missense_Mutation SNP G G A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 UHRF1BP1L 23074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100452921 100452921 + Missense_Mutation SNP T T G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 Unknown 0 broad.mit.edu 37 1 43439784 43439784 + RNA SNP C T T rs191509438 by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 Unknown 0 broad.mit.edu 37 1 569343 569343 + RNA SNP C T T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 Unknown 0 broad.mit.edu 37 9 74622853 74622853 + RNA SNP G A A rs61748641 bycluster;byfrequency TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 Unknown 0 broad.mit.edu;ucsc.edu 37 18 74402256 74402256 + RNA SNP T C C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 URM1 81605 broad.mit.edu;hgsc.bcm.edu 37 9 131151698 131151698 + Missense_Mutation SNP C C G novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 USH2A 7399 broad.mit.edu;ucsc.edu 37 1 215848923 215848923 + Nonsense_Mutation SNP G T T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 USP24 23358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 55642115 55642115 + Silent SNP A A T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 USP6NL 9712 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 11543102 11543102 + Missense_Mutation SNP T T C novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191480 10191480 + Frame_Shift_Del DEL T T - novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 VWA5B2 90113 broad.mit.edu 37 3 183951431 183951431 + Missense_Mutation SNP C T T rs902417 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 ZC3HAV1 56829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 138764225 138764225 + Missense_Mutation SNP G G A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 ZNF132 7691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58948571 58948571 + Nonsense_Mutation SNP C C T novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729 ZNF507 22847 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 32843992 32843992 + Missense_Mutation SNP T T A novel TCGA-CZ-5465-01A-01D-1806-10 TCGA-CZ-5465-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 062b7e63-bb4e-4eaa-9aa4-f2af44c2ab37 d0b450b6-994f-4b30-881c-bb9fa4fdc729