Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCC12 94160 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 48149472 48149472 + Missense_Mutation SNP G G A rs146005796 TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 ABCC5 10057 hgsc.bcm.edu 37 3 183665257 183665257 + Frame_Shift_Del DEL A A - novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 ADAR 103 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154574687 154574687 + Nonsense_Mutation SNP A A T novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 AGTR1 185 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 148459496 148459496 + Missense_Mutation SNP C C G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 ANKLE2 23141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133327385 133327385 + Missense_Mutation SNP T T A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108201113 108201113 + Missense_Mutation SNP A A T novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108203617 108203617 + Frame_Shift_Del DEL G G - novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G G - G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 ATP8B4 79895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 50168715 50168715 + Silent SNP C C T novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 BAHCC1 57597 broad.mit.edu 37 17 79423404 79423404 + Frame_Shift_Del DEL A - - novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 BIRC6 57448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 32693677 32693677 + Missense_Mutation SNP A A T novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 C16orf89 146556 broad.mit.edu 37 16 5115948 5115948 + Missense_Mutation SNP C G G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 CADPS 8618 broad.mit.edu;ucsc.edu 37 3 62388785 62388785 + Nonsense_Mutation SNP G A A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 CADPS 8618 broad.mit.edu;ucsc.edu 37 3 62388786 62388786 + Silent SNP A G G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 CDKN2C 1031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 51436156 51436156 + Missense_Mutation SNP G G C novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 CENPW 387103 broad.mit.edu;ucsc.edu 37 6 126669610 126669610 + Splice_Site SNP A G G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 CHRNA9 55584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 40337469 40337469 + Splice_Site SNP G G C novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 CNOT1 23019 hgsc.bcm.edu;ucsc.edu 37 16 58555162 58555168 + Frame_Shift_Del DEL AAGGTAA AAGGTAA - novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 AAGGTAA AAGGTAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 CPAMD8 27151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17115085 17115085 + Missense_Mutation SNP T T C novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 CPSF7 79869 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61183665 61183665 + Missense_Mutation SNP G G T novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 CSF3R 1441 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36931800 36931800 + Missense_Mutation SNP G G A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 CYP26B1 56603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 72362015 72362015 + Missense_Mutation SNP C C T novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 DCAF17 80067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 172291646 172291646 + Silent SNP C C G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 DHDH 27294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49439432 49439433 + Frame_Shift_Ins INS - - A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 DHDH 27294 hgsc.bcm.edu 37 19 49439433 49439433 + Missense_Mutation SNP G G A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 DHX30 22907 broad.mit.edu;ucsc.edu 37 3 47887677 47887677 + Missense_Mutation SNP T G G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 DNAJC10 54431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 183616891 183616891 + Silent SNP A A G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 DOCK4 9732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 111379463 111379463 + Nonsense_Mutation SNP G G T novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 DSPP 1834 broad.mit.edu 37 4 88537258 88537258 + Silent SNP T C C novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 DYNC1H1 1778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 102446833 102446833 + Missense_Mutation SNP A A G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 EPS15 2060 hgsc.bcm.edu 37 1 51869130 51869130 + Frame_Shift_Del DEL T T - novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 ESCO1 114799 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 19119910 19119910 + Missense_Mutation SNP G G A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 F2 2147 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 46747604 46747604 + Missense_Mutation SNP A A G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 FAM151A 338094 broad.mit.edu;ucsc.edu 37 1 55077410 55077410 + Missense_Mutation SNP A C C novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 FAM35A 54537 broad.mit.edu;hgsc.bcm.edu 37 10 88930275 88930275 + Silent SNP G G C novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 FBXO34 55030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 55817639 55817639 + Silent SNP T T G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 GCC1 79571 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127224747 127224747 + Nonsense_Mutation SNP G G A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 GCKR 2646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27719812 27719812 + Missense_Mutation SNP C C T novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 HELZ 9931 broad.mit.edu;ucsc.edu 37 17 65141857 65141857 + Splice_Site SNP A G G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 IL27RA 9466 broad.mit.edu;ucsc.edu 37 19 14157347 14157347 + Missense_Mutation SNP T C C novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 ITCH 83737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33012330 33012330 + Silent SNP A A C novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 KCNMA1 3778 broad.mit.edu 37 10 78709126 78709126 + Splice_Site SNP T C C novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 KIAA1797 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 20990252 20990253 + Frame_Shift_Ins INS - - G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 KIF1B 23095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 10394639 10394639 + Missense_Mutation SNP G G A rs145596547 TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 KIF5C 3800 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 149851037 149851037 + Missense_Mutation SNP A A G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 KNTC1 9735 hgsc.bcm.edu;ucsc.edu 37 12 123028814 123028814 + Frame_Shift_Del DEL G G - novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 LAMA1 284217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 7042148 7042148 + Silent SNP G G A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 LAMA4 3910 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 112441543 112441543 + Silent SNP A A T novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 LAMA4 3910 broad.mit.edu;ucsc.edu 37 6 112441542 112441542 + Missense_Mutation SNP G T T novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 LASS3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 101009686 101009686 + Missense_Mutation SNP C C G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 LOC283761 283761 broad.mit.edu 37 15 90048926 90048927 + RNA INS - C C novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 LOC440896 440896 broad.mit.edu 37 9 69192740 69192740 + RNA SNP A G G rs62551649 bycluster TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 LRRC8A 56262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131669449 131669449 + Silent SNP T T A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 MGAT4A 11320 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 99256416 99256416 + Missense_Mutation SNP G G A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 MRPS33 51650 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 140710230 140710230 + Silent SNP A A C novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 MYO1C 4641 hgsc.bcm.edu;ucsc.edu 37 17 1382903 1382903 + Frame_Shift_Del DEL G G - novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 NHLRC2 374354 hgsc.bcm.edu;ucsc.edu 37 10 115636591 115636591 + Frame_Shift_Del DEL A A - novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 ONECUT2 9480 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 55143848 55143848 + Missense_Mutation SNP G G A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 OR52J3 119679 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5068347 5068347 + Missense_Mutation SNP G G A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 OR6C4 341418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 55945508 55945508 + Missense_Mutation SNP C C G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 OR6C68 403284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 55886972 55886972 + Missense_Mutation SNP G G C novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 PCDHGA12 26025 hgsc.bcm.edu 37 5 140812776 140812776 + Frame_Shift_Del DEL T T - novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 PCSK2 5126 broad.mit.edu;hgsc.bcm.edu 37 20 17417410 17417410 + Missense_Mutation SNP G G T novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 PDE4B 5142 broad.mit.edu 37 1 66827366 66827366 + Missense_Mutation SNP C A A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 PDGFD 80310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 103797665 103797665 + Missense_Mutation SNP C C A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 PDSS2 57107 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 107655484 107655484 + Missense_Mutation SNP G G A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 PNN 5411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 39645318 39645318 + Silent SNP T T C novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 PREX2 80243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 69009342 69009342 + Missense_Mutation SNP G G C novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 PTPRC 5788 broad.mit.edu;hgsc.bcm.edu 37 1 198687258 198687258 + Missense_Mutation SNP A A T novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 PWP1 11137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 108082496 108082496 + Missense_Mutation SNP G G A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 PYGM 5837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64514199 64514199 + Missense_Mutation SNP A A G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 RAB3GAP2 25782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 220346067 220346067 + Silent SNP A A G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 RARA 5914 broad.mit.edu;ucsc.edu 37 17 38508320 38508320 + Missense_Mutation SNP A G G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 RASGEF1C 255426 broad.mit.edu;ucsc.edu 37 5 179546418 179546418 + Missense_Mutation SNP T G G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 RNF139 11236 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 125498660 125498660 + Nonsense_Mutation SNP T T G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 ROCK1 6093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 18546995 18546995 + Nonsense_Mutation SNP G G A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 SCAP 22937 broad.mit.edu 37 3 47461081 47461099 + Frame_Shift_Del DEL AGCCAGGGCTCCCTCACCC - - novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 AGCCAGGGCTCCCTCACCC AGCCAGGGCTCCCTCACCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 SCARB2 950 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 77100845 77100845 + Missense_Mutation SNP C C A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 SERPINB8 5271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 61650927 61650927 + Frame_Shift_Del DEL C C - novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 SF3A3 10946 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 38455225 38455225 + Nonsense_Mutation SNP G G A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 SF3A3 10946 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 38455226 38455226 + Missense_Mutation SNP C C T novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 SH2B2 10603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 101952119 101952119 + Missense_Mutation SNP T T G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 SLC47A2 146802 broad.mit.edu;ucsc.edu 37 17 19619790 19619790 + Missense_Mutation SNP A G G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 SLC5A10 125206 broad.mit.edu;ucsc.edu 37 17 18874338 18874338 + Missense_Mutation SNP T C C novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 SPOCD1 90853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 32259422 32259422 + Silent SNP G G T novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 SRGAP3 9901 broad.mit.edu 37 3 9068661 9068661 + Missense_Mutation SNP G A A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 THSD7A 221981 broad.mit.edu;ucsc.edu 37 7 11446611 11446611 + Missense_Mutation SNP C G G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 TNFRSF1A 7132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6439822 6439822 + Silent SNP G G T novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 TUBB3 10381 broad.mit.edu 37 16 89986131 89986131 + Missense_Mutation SNP C G G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 TUBB3 10381 broad.mit.edu;ucsc.edu 37 16 89986049 89986049 + Missense_Mutation SNP T C C novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 TUSC5 286753 broad.mit.edu;ucsc.edu 37 17 1198861 1198861 + Missense_Mutation SNP C G G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 Unknown 0 broad.mit.edu 37 15 62534753 62534753 + RNA DEL T - - novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 Unknown 0 broad.mit.edu 37 21 9769171 9769172 + RNA INS - TT TT novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 USP24 23358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 55619805 55619805 + Missense_Mutation SNP T T G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T T G T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 VASP 7408 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46024608 46024608 + Silent SNP T T G novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 WFIKKN2 124857 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48916926 48916926 + Missense_Mutation SNP T T A novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788 ZNF187 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 28244851 28244851 + Missense_Mutation SNP A A C novel TCGA-CZ-5451-01A-01D-1501-10 TCGA-CZ-5451-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1923d68-1d1e-4b59-b643-09e2c5969efd 9929ec38-d099-46f7-bcb4-7f6262394788