Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCC5 10057 hgsc.bcm.edu;ucsc.edu 37 3 183706414 183706414 + Missense_Mutation SNP A A C novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe ABCG4 64137 hgsc.bcm.edu;ucsc.edu 37 11 119031336 119031336 + Missense_Mutation SNP T T A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe ADAM23 8745 hgsc.bcm.edu;ucsc.edu 37 2 207457434 207457434 + Silent SNP C C T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe ADAMTS18 170692 hgsc.bcm.edu;ucsc.edu 37 16 77465292 77465292 + Missense_Mutation SNP G G T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe APH1B 83464 hgsc.bcm.edu 37 15 63571478 63571478 + Missense_Mutation SNP G G T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe APPL1 26060 hgsc.bcm.edu 37 3 57280129 57280129 + Missense_Mutation SNP T T G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe ARID1A 8289 hgsc.bcm.edu;ucsc.edu 37 1 27099430 27099430 + Missense_Mutation SNP C C T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I WXS PGM SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe ARID4A 5926 hgsc.bcm.edu;ucsc.edu 37 14 58831047 58831047 + Missense_Mutation SNP A A G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe ARPC5L 81873 hgsc.bcm.edu;ucsc.edu 37 9 127637307 127637307 + Missense_Mutation SNP G G T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe ATM 472 hgsc.bcm.edu;ucsc.edu 37 11 108206594 108206594 + Missense_Mutation SNP A A G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A A G A A Unknown Valid Somatic Phase_I WXS PGM SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe C10orf35 219738 hgsc.bcm.edu;ucsc.edu 37 10 71391583 71391583 + Missense_Mutation SNP C C G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe C12orf41 0 hgsc.bcm.edu;ucsc.edu 37 12 49063049 49063049 + Missense_Mutation SNP C C T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe CACNA1A 773 hgsc.bcm.edu;ucsc.edu 37 19 13419273 13419273 + Missense_Mutation SNP C C T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe CADM2 253559 hgsc.bcm.edu 37 3 85851255 85851255 + Silent SNP A A C novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe CC2D2B 387707 hgsc.bcm.edu;ucsc.edu 37 10 97791691 97791691 + Missense_Mutation SNP G G T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe CDH19 28513 hgsc.bcm.edu;ucsc.edu 37 18 64172301 64172301 + Silent SNP G G A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe CES2 8824 hgsc.bcm.edu;ucsc.edu 37 16 66972074 66972074 + Missense_Mutation SNP C C A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe CHIT1 1118 hgsc.bcm.edu 37 1 203186979 203186979 + Missense_Mutation SNP C C G rs140228721 alternate_allele TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe CNGA3 1261 hgsc.bcm.edu 37 2 98994250 98994250 + Missense_Mutation SNP C C A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe CNR1 1268 hgsc.bcm.edu;ucsc.edu 37 6 88853921 88853921 + Missense_Mutation SNP G G T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe CNTN5 53942 hgsc.bcm.edu;ucsc.edu 37 11 100211348 100211348 + Missense_Mutation SNP A A G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe CRELD1 78987 hgsc.bcm.edu 37 3 9984520 9984520 + Nonsense_Mutation SNP G G T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe CRYBG3 131544 hgsc.bcm.edu;ucsc.edu 37 3 97617751 97617751 + Missense_Mutation SNP C C A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe DMXL2 23312 hgsc.bcm.edu;ucsc.edu 37 15 51790800 51790800 + Missense_Mutation SNP C C A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe DNAH2 146754 hgsc.bcm.edu;ucsc.edu 37 17 7671377 7671377 + Missense_Mutation SNP A A G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe DNAH3 55567 hgsc.bcm.edu;ucsc.edu 37 16 21065766 21065766 + Silent SNP C C T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe DNHD1 144132 hgsc.bcm.edu 37 11 6567885 6567885 + Missense_Mutation SNP A A C novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe DNHD1 144132 hgsc.bcm.edu 37 11 6567893 6567895 + In_Frame_Del DEL GGC GGC - novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 GGC GGC . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe DOCK3 1795 hgsc.bcm.edu;ucsc.edu 37 3 51376390 51376390 + Missense_Mutation SNP A A G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe EPC2 26122 hgsc.bcm.edu;ucsc.edu 37 2 149528431 149528431 + Missense_Mutation SNP G G T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe EZH1 2145 hgsc.bcm.edu;ucsc.edu 37 17 40857163 40857163 + Silent SNP G G A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe F12 2161 hgsc.bcm.edu 37 5 176832389 176832389 + Missense_Mutation SNP A A C novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe FANCA 2175 hgsc.bcm.edu;ucsc.edu 37 16 89807257 89807257 + Missense_Mutation SNP G G T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe GAD2 2572 hgsc.bcm.edu;ucsc.edu 37 10 26534856 26534856 + Missense_Mutation SNP T T C novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe GALNT5 11227 hgsc.bcm.edu;ucsc.edu 37 2 158114714 158114714 + Missense_Mutation SNP C C G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe GOLGA5 9950 hgsc.bcm.edu 37 14 93276655 93276655 + Missense_Mutation SNP T T C novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe GPR160 26996 hgsc.bcm.edu;ucsc.edu 37 3 169802564 169802564 + Silent SNP G G A rs148749842 alternate_allele TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe HCFC1 3054 hgsc.bcm.edu 37 X 153236183 153236183 + Missense_Mutation SNP G G T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe HLA-DRB1 3123 hgsc.bcm.edu 37 6 32552091 32552091 + Missense_Mutation SNP G G C rs17884840 bycluster;byfrequency TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe INVS 27130 hgsc.bcm.edu;ucsc.edu 37 9 103060232 103060232 + Missense_Mutation SNP G G T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe KCNJ12 3768 hgsc.bcm.edu 37 17 21318760 21318760 + Missense_Mutation SNP G G T rs74880280 bycluster;byfrequency TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe KDM5D 8284 hgsc.bcm.edu 37 Y 21868427 21868427 + Missense_Mutation SNP C C A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe LIPC 3990 hgsc.bcm.edu;ucsc.edu 37 15 58838059 58838059 + Silent SNP C C T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe MAGEB6 158809 hgsc.bcm.edu;ucsc.edu 37 X 26212893 26212893 + Missense_Mutation SNP C C A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe MAGED1 9500 hgsc.bcm.edu;ucsc.edu 37 X 51637859 51637859 + Missense_Mutation SNP A A G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe ME3 10873 hgsc.bcm.edu;ucsc.edu 37 11 86198484 86198484 + Splice_Site SNP T T G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe MED12 9968 hgsc.bcm.edu 37 X 70352801 70352801 + Missense_Mutation SNP C C T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe MKLN1 4289 hgsc.bcm.edu;ucsc.edu 37 7 131147981 131147982 + Frame_Shift_Del DEL AT AT - novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 AT AT . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe MTHFD1L 25902 hgsc.bcm.edu;ucsc.edu 37 6 151336687 151336687 + Missense_Mutation SNP A A T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe NEDD4 4734 hgsc.bcm.edu 37 15 56126438 56126438 + Missense_Mutation SNP T T G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe NLRP5 126206 hgsc.bcm.edu 37 19 56565046 56565046 + Silent SNP G G A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe NNT 23530 hgsc.bcm.edu 37 5 43675692 43675692 + Missense_Mutation SNP T T A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe NUDCD1 84955 hgsc.bcm.edu 37 8 110255494 110255494 + Missense_Mutation SNP A A G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe OR5P2 120065 hgsc.bcm.edu 37 11 7818386 7818387 + Frame_Shift_Ins INS - - T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 - - . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe OSTalpha 0 hgsc.bcm.edu;ucsc.edu 37 3 195955792 195955792 + Splice_Site SNP G G A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe PDE4DIP 9659 hgsc.bcm.edu 37 1 144856852 144856852 + Silent SNP C C T rs150847495 byfrequency TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe PDHA1 5160 hgsc.bcm.edu;ucsc.edu 37 X 19369447 19369447 + Missense_Mutation SNP C C G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe PGBD1 84547 hgsc.bcm.edu;ucsc.edu 37 6 28269595 28269595 + Missense_Mutation SNP C C T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe PHF20 51230 hgsc.bcm.edu 37 20 34451134 34451134 + Missense_Mutation SNP A A G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe PIK3C2B 5287 hgsc.bcm.edu 37 1 204419062 204419062 + Missense_Mutation SNP G G T rs142362916 byfrequency;alternate_allele TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe PKD1L1 168507 hgsc.bcm.edu;ucsc.edu 37 7 47925313 47925313 + Missense_Mutation SNP G G A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe PLCB2 5330 hgsc.bcm.edu;ucsc.edu 37 15 40591379 40591379 + Missense_Mutation SNP G G T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe PLCH2 9651 hgsc.bcm.edu 37 1 2431088 2431088 + Missense_Mutation SNP C C A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe POGK 57645 hgsc.bcm.edu 37 1 166818327 166818327 + Missense_Mutation SNP T T A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe PRDM2 7799 hgsc.bcm.edu;ucsc.edu 37 1 14106783 14106783 + Silent SNP A A G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe PTPRD 5789 hgsc.bcm.edu;ucsc.edu 37 9 8507401 8507401 + Missense_Mutation SNP G G A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe RNF128 79589 hgsc.bcm.edu 37 X 105970574 105970574 + Missense_Mutation SNP T T C novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe RNF19B 127544 hgsc.bcm.edu;ucsc.edu 37 1 33413940 33413940 + Missense_Mutation SNP C C T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe RNF219 79596 hgsc.bcm.edu;ucsc.edu 37 13 79190197 79190197 + Silent SNP A A G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe RUNX1T1 862 hgsc.bcm.edu 37 8 93004069 93004069 + Silent SNP T T G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe RYR2 6262 hgsc.bcm.edu;ucsc.edu 37 1 237664037 237664037 + Missense_Mutation SNP C C G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe SART3 9733 hgsc.bcm.edu;ucsc.edu 37 12 108931344 108931344 + Missense_Mutation SNP C C T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe SCARB2 950 hgsc.bcm.edu;ucsc.edu 37 4 77095296 77095296 + Splice_Site SNP C C T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe SELPLG 6404 hgsc.bcm.edu;ucsc.edu 37 12 109017991 109017991 + Silent SNP G G A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe SETD2 29072 hgsc.bcm.edu 37 3 47098445 47098445 + Nonsense_Mutation SNP G G A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I WXS PGM SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe SI 6476 hgsc.bcm.edu 37 3 164732948 164732948 + Missense_Mutation SNP A A G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe SIPA1L1 26037 hgsc.bcm.edu;ucsc.edu 37 14 72169179 72169179 + Silent SNP G G A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe SLC34A1 6569 hgsc.bcm.edu 37 5 176824836 176824836 + Missense_Mutation SNP C C G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe SLC4A7 9497 hgsc.bcm.edu 37 3 27463253 27463253 + Missense_Mutation SNP C C A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe SLITRK1 114798 hgsc.bcm.edu 37 13 84454708 84454708 + Missense_Mutation SNP G G A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe SMARCA4 6597 hgsc.bcm.edu 37 19 11145751 11145751 + Silent SNP C C A rs143621108 alternate_allele TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe SMPD2 6610 hgsc.bcm.edu;ucsc.edu 37 6 109763200 109763200 + Missense_Mutation SNP G G A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe SNIP1 79753 hgsc.bcm.edu;ucsc.edu 37 1 38006224 38006225 + Frame_Shift_Ins INS - - A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 - - . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe SYBU 55638 hgsc.bcm.edu;ucsc.edu 37 8 110588188 110588188 + Missense_Mutation SNP C C A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe SYNE1 23345 hgsc.bcm.edu;ucsc.edu 37 6 152776696 152776696 + Missense_Mutation SNP C C A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe SYP 6855 hgsc.bcm.edu 37 X 49049790 49049790 + Missense_Mutation SNP T T C novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe TECTA 7007 hgsc.bcm.edu;ucsc.edu 37 11 121000530 121000530 + Missense_Mutation SNP T T A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe TET2 54790 hgsc.bcm.edu;ucsc.edu 37 4 106193890 106193890 + Missense_Mutation SNP G G A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe TMX2 51075 hgsc.bcm.edu;ucsc.edu 37 11 57480238 57480238 + Missense_Mutation SNP C C T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe TOP3A 7156 hgsc.bcm.edu;ucsc.edu 37 17 18205997 18205997 + Missense_Mutation SNP C C A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe TUBGCP6 85378 hgsc.bcm.edu 37 22 50682273 50682273 + Missense_Mutation SNP A A T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe TWISTNB 221830 hgsc.bcm.edu;ucsc.edu 37 7 19738224 19738224 + Silent SNP G G A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe USH2A 7399 hgsc.bcm.edu;ucsc.edu 37 1 216465660 216465660 + Missense_Mutation SNP T T G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe USP6 9098 hgsc.bcm.edu 37 17 5066236 5066236 + Silent SNP C C A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe USP9X 8239 hgsc.bcm.edu;ucsc.edu 37 X 41025335 41025335 + Silent SNP A A G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10191479 10191479 + Missense_Mutation SNP C C G novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe WNK1 65125 hgsc.bcm.edu;ucsc.edu 37 12 1005370 1005370 + Missense_Mutation SNP A A T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe XPC 7508 hgsc.bcm.edu;ucsc.edu 37 3 14188813 14188813 + Missense_Mutation SNP G G T novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe ZCCHC2 54877 hgsc.bcm.edu;ucsc.edu 37 18 60242638 60242638 + Silent SNP T T C novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe ZKSCAN1 7586 hgsc.bcm.edu;ucsc.edu 37 7 99631799 99631799 + Silent SNP G G A novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe ZNF441 126068 hgsc.bcm.edu;ucsc.edu 37 19 11892094 11892094 + Silent SNP T T C novel TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe SETD2 29072 ucsc.edu 37 3 47163824 47163824 + Missense_Mutation SNP C C G rs9311404 bycluster;byfrequency;by1000genomes TCGA-CZ-4861-01A-01D-1373-10 TCGA-CZ-4861-11A-01D-1373-10 C C C G C C Unknown Valid Somatic . WXS PGM . . SOLID b0fe8da0-5e6a-4893-ac30-fff975c80b50 3f6e4528-5418-418d-a5a6-2fe960a857fe