Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID A2ML1 144568 hgsc.bcm.edu 37 12 9016563 9016564 + Frame_Shift_Del DEL GC GC - rs144686314 by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 GC GC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 ALK 238 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 29462601 29462601 + Frame_Shift_Del DEL T T - novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 ANKRD36 375248 hgsc.bcm.edu 37 2 97817647 97817647 + Missense_Mutation SNP A A G rs79579412 TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 APLF 200558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 68740264 68740264 + Missense_Mutation SNP C C A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 ARHGAP39 80728 broad.mit.edu;hgsc.bcm.edu 37 8 145759519 145759519 + Silent SNP G G A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 ARMCX3 51566 broad.mit.edu;hgsc.bcm.edu 37 X 100880895 100880895 + Missense_Mutation SNP T T A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 ATR 545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 142281209 142281209 + Silent SNP A A T novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 BDP1 55814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 70835434 70835434 + Missense_Mutation SNP G G A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 BLVRA 644 hgsc.bcm.edu;ucsc.edu 37 7 43827571 43827572 + Frame_Shift_Del DEL GC GC - novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 GC GC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 BRWD1 54014 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 40568354 40568354 + Missense_Mutation SNP C C A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 C14orf19 0 broad.mit.edu 37 14 35409214 35409214 + RNA SNP T C C rs1967723 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 C20orf85 128602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 56728656 56728656 + Missense_Mutation SNP G G A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 CDC14A 8556 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100961574 100961574 + Missense_Mutation SNP G G C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 CFHR1 3078 hgsc.bcm.edu 37 1 196797292 196797292 + Missense_Mutation SNP G G C rs388862 bycluster;by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 CMYA5 202333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 79031276 79031276 + Missense_Mutation SNP G G C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 CRIP3 401262 hgsc.bcm.edu;ucsc.edu 37 6 43273854 43273855 + Frame_Shift_Ins INS - - C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 CUBN 8029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 17110704 17110704 + Silent SNP T T G novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 CYB5R3 1727 broad.mit.edu;hgsc.bcm.edu 37 22 43024289 43024289 + Splice_Site SNP T T A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 DCLRE1A 9937 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 115609321 115609321 + Missense_Mutation SNP C C T novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 DEAF1 10522 broad.mit.edu;hgsc.bcm.edu 37 11 687971 687971 + Nonsense_Mutation SNP C C A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 DENND4A 10260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 66044741 66044741 + Silent SNP G G A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 DPCR1 135656 hgsc.bcm.edu 37 6 30918748 30918748 + Missense_Mutation SNP A A C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 DPF3 8110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 73141008 73141008 + Missense_Mutation SNP T T C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 DTX1 1840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 113531851 113531851 + Missense_Mutation SNP C C G novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 EBF3 253738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 131638545 131638545 + Missense_Mutation SNP G G A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 EBLN2 55096 hgsc.bcm.edu 37 3 73111503 73111504 + In_Frame_Ins INS - - TGG novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 F5 2153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169529926 169529926 + Missense_Mutation SNP T T A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 FIG4 9896 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 110083350 110083350 + Missense_Mutation SNP A A C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 FLJ40330 0 broad.mit.edu 37 2 89100619 89100619 + RNA SNP C T T rs75347118 bycluster TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 FMNL2 114793 hgsc.bcm.edu 37 2 153476066 153476067 + In_Frame_Ins INS - - CCA rs5835439 TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 GOLGA6L10 647042 broad.mit.edu 37 15 83014106 83014106 + Silent SNP T C C rs62009901 TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 GPRIN1 114787 hgsc.bcm.edu 37 5 176026122 176026122 + Silent SNP C C T novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 GTF2A1 2957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 81682787 81682787 + Silent SNP C C T novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 HIP1R 9026 broad.mit.edu 37 12 123345228 123345228 + Missense_Mutation SNP A G G novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 IGFN1 91156 hgsc.bcm.edu 37 1 201178849 201178849 + Missense_Mutation SNP G G A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 IGFN1 91156 hgsc.bcm.edu 37 1 201179977 201179977 + Missense_Mutation SNP G G A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 IGFN1 91156 hgsc.bcm.edu 37 1 201179984 201179984 + Missense_Mutation SNP A A G novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 IGFN1 91156 hgsc.bcm.edu 37 1 201180361 201180361 + Missense_Mutation SNP G G A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 KAZ 0 broad.mit.edu;hgsc.bcm.edu 37 1 15370643 15370643 + Silent SNP C C T novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 LATS2 26524 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 21562131 21562131 + Missense_Mutation SNP G G C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 LOC220729 220729 broad.mit.edu 37 3 197348668 197348668 + RNA SNP C G G rs79940815 bycluster;by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 LOC220729 220729 broad.mit.edu 37 3 197348674 197348674 + RNA SNP A G G novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 MLL5 55904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 104753209 104753209 + Missense_Mutation SNP A A G novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 MUC2 4583 hgsc.bcm.edu 37 11 1092816 1092816 + Silent SNP G G C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 MUC2 4583 hgsc.bcm.edu 37 11 1092841 1092841 + Missense_Mutation SNP G G A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 NBPF9 400818 broad.mit.edu 37 1 144813824 144813824 + Silent SNP G C C rs77446849 byfrequency TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 NBPF9 400818 broad.mit.edu 37 1 144828610 144828610 + Silent SNP T G G rs76444116 TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 NEK5 341676 broad.mit.edu;hgsc.bcm.edu 37 13 52661584 52661584 + Missense_Mutation SNP G G C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 NIPBL 25836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 37020560 37020560 + Splice_Site SNP G G T novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 NLGN2 57555 broad.mit.edu;hgsc.bcm.edu 37 17 7319145 7319145 + Silent SNP G G C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 NLRP9 338321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56243618 56243618 + Missense_Mutation SNP G G A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 NUP85 79902 broad.mit.edu;ucsc.edu 37 17 73205917 73205918 + Splice_Site INS - A A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 OR5AR1 219493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56431747 56431747 + Nonsense_Mutation SNP G G T novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu 37 3 52663052 52663052 + Splice_Site SNP C C A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C C A C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 PCNX 22990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 71524405 71524405 + Missense_Mutation SNP C C G novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 PHRF1 57661 broad.mit.edu 37 11 608822 608822 + Silent SNP G A A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 PLIN4 729359 hgsc.bcm.edu 37 19 4511479 4511479 + Silent SNP A A T rs138464610 by1000genomes;alternate_allele TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 POLH 5429 hgsc.bcm.edu;ucsc.edu 37 6 43581424 43581425 + In_Frame_Ins INS - - TGT novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 POTEA 340441 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 43152262 43152262 + Silent SNP G G A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 POU3F4 5456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 82763423 82763423 + Missense_Mutation SNP T T C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 PRAMEF12 390999 hgsc.bcm.edu 37 1 12837358 12837358 + Silent SNP G G A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 PRB1 5542 broad.mit.edu;hgsc.bcm.edu 37 12 11506647 11506647 + Silent SNP T T C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 PRB4 5545 hgsc.bcm.edu 37 12 11461580 11461580 + Missense_Mutation SNP T T G rs12303607 by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 PRIM2 5558 broad.mit.edu 37 6 57512787 57512788 + Splice_Site INS - CACCAAGGC CACCAAGGC novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 PRIM2 5558 broad.mit.edu 37 6 57512788 57512789 + Splice_Site INS - TA TA novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 PSG9 5678 hgsc.bcm.edu;ucsc.edu 37 19 43772159 43772159 + Frame_Shift_Del DEL T T - novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 RAB3A 5864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18309636 18309636 + Nonsense_Mutation SNP G G C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 RAB8B 51762 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 63547744 63547744 + Silent SNP C C G novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 RANBP2 5903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 109379866 109379866 + Missense_Mutation SNP G G C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 RARA 5914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38508596 38508596 + Missense_Mutation SNP A A G novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 SBSN 374897 hgsc.bcm.edu 37 19 36018413 36018413 + Silent SNP T T A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 SDHAP1 255812 broad.mit.edu 37 3 195698264 195698264 + RNA SNP T C C rs52815337 bycluster TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 SEMA4A 64218 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156146590 156146590 + Silent SNP A A G novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 SGK494 124923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26939689 26939689 + Missense_Mutation SNP G G T novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 SH3GLB2 56904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131772971 131772971 + Missense_Mutation SNP A A C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 SIRPA 140885 hgsc.bcm.edu;ucsc.edu 37 20 1896052 1896054 + In_Frame_Del DEL CGA CGA - rs139878822 bycluster;by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 CGA CGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 SLC39A4 55630 broad.mit.edu 37 8 145642062 145642062 + Missense_Mutation SNP C T T novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 SPAG5 10615 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26905536 26905536 + Missense_Mutation SNP T T A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 SSH3 54961 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 67072383 67072383 + Missense_Mutation SNP G G A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 ST18 9705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 53085059 53085059 + Missense_Mutation SNP C C A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 STAG1 10274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 136062787 136062787 + Silent SNP G G T novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 SUZ12 23512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 30321020 30321020 + Missense_Mutation SNP A A C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 SYK 6850 broad.mit.edu;ucsc.edu 37 9 93606288 93606288 + Silent SNP T C C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 TAF1B 9014 hgsc.bcm.edu 37 2 9989571 9989571 + Frame_Shift_Del DEL A A - novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 TBC1D3H 729877 hgsc.bcm.edu 37 17 34746599 34746600 + Frame_Shift_Ins INS - - G novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 TM6SF2 53345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19380554 19380554 + Silent SNP G G C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 TMBIM1 64114 broad.mit.edu 37 2 219146894 219146894 + Translation_Start_Site SNP G T T novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 TMTC2 160335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 83525988 83525988 + Splice_Site SNP G G C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 UBE3A 7337 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 25616769 25616769 + Missense_Mutation SNP G G C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 Unknown 0 broad.mit.edu 37 1 143255819 143255820 + RNA INS - TTTT TTTT rs36059460 alternate_allele TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 Unknown 0 broad.mit.edu 37 1 148891580 148891580 + RNA SNP A T T rs3880332 bycluster TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 Unknown 0 broad.mit.edu 37 1 148891643 148891643 + RNA SNP A G G rs71219755 TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 Unknown 0 broad.mit.edu 37 22 20980390 20980390 + RNA SNP A G G novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 Unknown 0 broad.mit.edu 37 9 68413654 68413654 + RNA SNP G A A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 WDFY4 57705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 50108353 50108353 + Splice_Site SNP T T A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 ZHX3 23051 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 39831405 39831405 + Missense_Mutation SNP C C T novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 ZNF20 7568 broad.mit.edu 37 19 12258560 12258560 + Translation_Start_Site SNP G T T novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 ZNF492 57615 hgsc.bcm.edu 37 19 22836805 22836805 + Missense_Mutation SNP G G A novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 ZNF546 339327 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40519782 40519782 + Missense_Mutation SNP T T C novel TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77 ZNF772 400720 hgsc.bcm.edu 37 19 57988666 57988667 + In_Frame_Ins INS - - GCC rs34678661 bycluster;by1000genomes TCGA-CW-5589-01A-01D-1534-10 TCGA-CW-5589-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1b353345-c75f-45fa-a2e3-86782b868abc f3decfca-d5a9-49b9-8a45-98a8f305dd77