Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABT1 29777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 26598223 26598223 + Missense_Mutation SNP G G T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f ALK 238 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 29455209 29455209 + Missense_Mutation SNP A A G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f ATN1 1822 hgsc.bcm.edu 37 12 7045918 7045918 + Missense_Mutation SNP G G T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f ATP1A1 476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 116939249 116939249 + Missense_Mutation SNP C C G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f BRWD1 54014 broad.mit.edu;hgsc.bcm.edu 37 21 40568620 40568620 + Missense_Mutation SNP T T G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f C10orf118 55088 hgsc.bcm.edu;ucsc.edu 37 10 115917317 115917320 + Frame_Shift_Del DEL TTAA TTAA - novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 TTAA TTAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f C17orf66 256957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 34182344 34182344 + Missense_Mutation SNP A A T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f CCDC136 64753 broad.mit.edu;ucsc.edu 37 7 128457873 128457873 + Missense_Mutation SNP C T T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f CCDC45 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62506316 62506316 + Missense_Mutation SNP A A C novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f CD163L1 283316 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7520737 7520737 + Missense_Mutation SNP T T G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f CDC14A 8556 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100964518 100964518 + Silent SNP A A G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f CEACAM20 125931 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45026873 45026873 + Missense_Mutation SNP C C T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f CPXM1 56265 broad.mit.edu;ucsc.edu 37 20 2777900 2777900 + Missense_Mutation SNP T G G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f CROCCL1 0 broad.mit.edu 37 1 16946407 16946407 + RNA SNP T G G rs10796418 bycluster;by2hit2allele;byhapmap TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f DENND3 22898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 142186848 142186848 + Silent SNP C C A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f DHRS7C 201140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 9674867 9674867 + Missense_Mutation SNP A A G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f DNAH1 25981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52402795 52402795 + Missense_Mutation SNP C C A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f DNMT1 1786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10250366 10250366 + Missense_Mutation SNP A A G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f DNPEP 23549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220239735 220239735 + Missense_Mutation SNP C C A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f DNPEP 23549 broad.mit.edu;ucsc.edu 37 2 220239736 220239736 + Missense_Mutation SNP C A A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f EPB41L5 57669 hgsc.bcm.edu;ucsc.edu 37 2 120847955 120847966 + In_Frame_Del DEL ACTGGATCATCC ACTGGATCATCC - novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 ACTGGATCATCC ACTGGATCATCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f FAM131C 348487 broad.mit.edu 37 1 16361925 16361925 + Silent SNP G A A rs75208590 TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f FAM186A 121006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 50745374 50745374 + Frame_Shift_Del DEL A A - novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f FAM3A 60343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153735234 153735234 + Missense_Mutation SNP C C T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f FBN2 2201 hgsc.bcm.edu;ucsc.edu 37 5 127686561 127686561 + Frame_Shift_Del DEL T T - novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f FMNL3 91010 broad.mit.edu;hgsc.bcm.edu 37 12 50045173 50045173 + Missense_Mutation SNP C C T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f FSTL5 56884 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 162307412 162307412 + Silent SNP G G A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f GPR85 54329 broad.mit.edu 37 7 112724772 112724772 + Missense_Mutation SNP G A A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f GRLF1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 47491245 47491245 + Splice_Site SNP G G C novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f GTF2F1 2962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6381619 6381619 + Missense_Mutation SNP G G C novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f HERC2 8924 broad.mit.edu;hgsc.bcm.edu 37 15 28499508 28499508 + Missense_Mutation SNP G G C novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f HLA-DRB5 3127 hgsc.bcm.edu 37 6 32489792 32489792 + Missense_Mutation SNP G G T rs41562816 bycluster;byfrequency TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f HLA-DRB5 3127 hgsc.bcm.edu 37 6 32489794 32489794 + Silent SNP G G A rs1059350 byfrequency;by1000genomes TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f HLA-DRB5 3127 hgsc.bcm.edu 37 6 32489825 32489825 + Missense_Mutation SNP T T A rs148834340 bycluster;byfrequency;by1000genomes TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f HLA-E 3133 broad.mit.edu 37 6 30459116 30459116 + Silent SNP T A A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f KRTAP5-11 440051 hgsc.bcm.edu 37 11 71293803 71293805 + In_Frame_Del DEL GCC GCC - novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 GCC GCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f LOC646214 646214 broad.mit.edu 37 15 21934898 21934899 + RNA INS - C C rs60809088 alternate_allele TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f LOC646214 646214 broad.mit.edu 37 15 21940266 21940267 + RNA INS - A A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f LRCH1 23143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 47279205 47279205 + Missense_Mutation SNP T T C novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f LRP1 4035 broad.mit.edu;hgsc.bcm.edu 37 12 57588207 57588207 + Silent SNP C C A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f LRRK2 120892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 40745464 40745464 + Missense_Mutation SNP C C G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f LRRK2 120892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 40745465 40745465 + Missense_Mutation SNP T T A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f LYPD5 284348 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44301842 44301842 + Silent SNP G G T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f MAP3K1 4214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 56152549 56152549 + Nonsense_Mutation SNP T T A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f MBD3L3 653657 hgsc.bcm.edu 37 19 7056593 7056593 + Frame_Shift_Del DEL C C - novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f MCCC1 56922 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 182740269 182740269 + Missense_Mutation SNP A A G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9087338 9087338 + Missense_Mutation SNP A A G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f MUC4 4585 hgsc.bcm.edu 37 3 195511438 195511438 + Missense_Mutation SNP G G T rs71635083 TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f MYO18B 84700 broad.mit.edu;ucsc.edu 37 22 26272193 26272193 + Missense_Mutation SNP T G G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f MYO5B 4645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 47500800 47500800 + Silent SNP G G T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f NBPF9 400818 broad.mit.edu 37 1 144220850 144220850 + Missense_Mutation SNP T G G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f NFATC3 4775 broad.mit.edu;ucsc.edu 37 16 68224816 68224816 + Silent SNP T A A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f NFIX 4784 broad.mit.edu;hgsc.bcm.edu 37 19 13136046 13136046 + Missense_Mutation SNP G G T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f NOS1AP 9722 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 162324998 162324999 + Frame_Shift_Ins INS - - GG novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f NOTCH3 4854 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15276831 15276831 + Frame_Shift_Del DEL C C - novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f NUDT21 11051 hgsc.bcm.edu 37 16 56485075 56485076 + Frame_Shift_Ins INS - - C novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f NXF4 55999 broad.mit.edu 37 X 101821152 101821152 + RNA DEL A - - novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f OR5F1 338674 broad.mit.edu;hgsc.bcm.edu 37 11 55761854 55761854 + Missense_Mutation SNP G G C novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f PANK3 79646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 167993043 167993044 + Frame_Shift_Del DEL TG TG - novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 TG TG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f PBRM1 55193 broad.mit.edu;ucsc.edu 37 3 52598080 52598080 + Missense_Mutation SNP T G G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T T G T T Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f PDE10A 10846 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 165844947 165844947 + Missense_Mutation SNP T T C novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f PES1 23481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30973095 30973095 + Missense_Mutation SNP G G A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f PM20D2 135293 broad.mit.edu;ucsc.edu 37 6 89871594 89871594 + Missense_Mutation SNP T A A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f PTCHD2 57540 broad.mit.edu;hgsc.bcm.edu 37 1 11579864 11579864 + Silent SNP C C T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f RFPL2 10739 broad.mit.edu;hgsc.bcm.edu 37 22 32587136 32587136 + Missense_Mutation SNP C C G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f RGS3 5998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 116246492 116246492 + Silent SNP T T C novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f RNASE12 493901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21058840 21058840 + Frame_Shift_Del DEL C C - novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f ROPN1B 152015 hgsc.bcm.edu;ucsc.edu 37 3 125690967 125690967 + Missense_Mutation SNP G G T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f RPF2 84154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 111346663 111346663 + Missense_Mutation SNP C C T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f RYR2 6262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 237664189 237664189 + Missense_Mutation SNP C C G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f SDK1 221935 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 4152925 4152925 + Nonsense_Mutation SNP C C T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47098903 47098903 + Nonsense_Mutation SNP A A T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A A T A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f SHC3 53358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 91680466 91680466 + Silent SNP A A C novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f SLFN12L 100506736 broad.mit.edu;hgsc.bcm.edu 37 17 33802320 33802320 + Silent SNP A A G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f SNRPN 6638 broad.mit.edu;hgsc.bcm.edu 37 15 25222145 25222145 + Missense_Mutation SNP C C G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f ST14 6768 hgsc.bcm.edu;ucsc.edu 37 11 130069949 130069949 + Frame_Shift_Del DEL G G - novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f SUV39H2 79723 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 14941580 14941580 + Missense_Mutation SNP G G A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f SUV39H2 79723 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 14941582 14941582 + Missense_Mutation SNP C C A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f TCERG1 10915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 145843272 145843272 + Missense_Mutation SNP C C T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f TCF12 6938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 57565458 57565458 + Missense_Mutation SNP G G T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f TDRD10 126668 hgsc.bcm.edu 37 1 154514536 154514537 + Frame_Shift_Ins INS - - C novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f TECPR1 25851 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 97851019 97851019 + Missense_Mutation SNP C C G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f TESK1 7016 broad.mit.edu;hgsc.bcm.edu 37 9 35608911 35608911 + Silent SNP G G C novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f THEM5 284486 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151824751 151824751 + Missense_Mutation SNP C C A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f TREX1 11277 broad.mit.edu;hgsc.bcm.edu 37 3 48508682 48508682 + Missense_Mutation SNP T T C novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179631234 179631234 + Nonsense_Mutation SNP G G A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f UBE2H 7328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 129479130 129479130 + Missense_Mutation SNP T T A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f UNC13D 201294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73832900 73832900 + Silent SNP A A T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f Unknown 0 broad.mit.edu 37 3 126386192 126386192 + Splice_Site SNP G A A novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f YTHDC1 91746 broad.mit.edu;ucsc.edu 37 4 69203460 69203460 + Missense_Mutation SNP T G G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f ZBTB40 9923 broad.mit.edu;ucsc.edu 37 1 22843894 22843894 + Missense_Mutation SNP A G G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f ZDHHC13 54503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 19187855 19187855 + Missense_Mutation SNP G G T novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f ZNF469 84627 broad.mit.edu 37 16 88494070 88494070 + Frame_Shift_Del DEL G - - novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f ZNF616 90317 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52619876 52619876 + Silent SNP T T G novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f STK31 56164 broad.mit.edu 37 7 23827688 23827688 + Silent SNP T C C novel TCGA-CJ-5682-01A-11D-1534-10 TCGA-CJ-5682-11A-01D-1535-10 T T T C T T Unknown Valid Somatic Phase_I WXS PGM . . Illumina GAIIx deceb0ba-600f-491a-a207-2e0205ff89d2 377fbab4-2520-4501-98bf-b1193022b81f