Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCF1 23 broad.mit.edu 37 6 30551602 30551602 + Missense_Mutation SNP T C C novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 ADAD2 161931 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 84229248 84229248 + Missense_Mutation SNP G G T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 ADAMTS12 81792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 33588814 33588814 + Missense_Mutation SNP G G T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 AHNAK 79026 broad.mit.edu;hgsc.bcm.edu 37 11 62290074 62290074 + Nonsense_Mutation SNP T T A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 AMY2B 280 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 104116348 104116348 + Missense_Mutation SNP G G A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 APOOL 139322 hgsc.bcm.edu;ucsc.edu 37 X 84342599 84342602 + Frame_Shift_Del DEL CAAC CAAC - novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 CAAC CAAC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 C12orf12 0 hgsc.bcm.edu 37 12 91347561 91347581 + In_Frame_Del DEL TCTTCCTCCTCATCTTCGACC TCTTCCTCCTCATCTTCGACC - novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 TCTTCCTCCTCATCTTCGACC TCTTCCTCCTCATCTTCGACC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 C12orf53 0 broad.mit.edu 37 12 6806817 6806817 + Silent SNP C T T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 C1orf94 84970 broad.mit.edu;ucsc.edu 37 1 34677961 34677961 + Missense_Mutation SNP C G G novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 C9orf114 51490 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131587284 131587284 + Silent SNP A A T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 C9orf128 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35826098 35826098 + Missense_Mutation SNP G G C novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 CCDC72 0 hgsc.bcm.edu 37 3 48485282 48485282 + Frame_Shift_Del DEL A A - novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 CDK14 5218 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 90356089 90356089 + Missense_Mutation SNP A A T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 CLCN6 1185 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11894362 11894362 + Silent SNP G G T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 CLGN 1047 broad.mit.edu;hgsc.bcm.edu 37 4 141321553 141321553 + Missense_Mutation SNP T T C novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 DAPK2 23604 broad.mit.edu;hgsc.bcm.edu 37 15 64200798 64200798 + Missense_Mutation SNP C C A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 DEFB129 140881 broad.mit.edu;ucsc.edu 37 20 207960 207960 + Missense_Mutation SNP C T T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 DMXL1 1657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 118502399 118502399 + Missense_Mutation SNP T T G novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 EXPH5 23086 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108382795 108382795 + Missense_Mutation SNP T T A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 F2RL2 2151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 75914170 75914170 + Missense_Mutation SNP A A C novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 FAF1 11124 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 50956260 50956260 + Silent SNP C C T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 FCGR3B 2215 broad.mit.edu;hgsc.bcm.edu 37 1 161599827 161599827 + Splice_Site SNP T T G novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 GEMIN5 25929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 154270986 154270986 + Silent SNP G G A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 GLI1 2735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57861144 57861144 + Missense_Mutation SNP G G T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 GOLGA6L10 647042 broad.mit.edu 37 15 83014132 83014132 + Missense_Mutation SNP C G G novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 GPR116 221395 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46826546 46826546 + Missense_Mutation SNP C C T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 GPR98 84059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 90074272 90074272 + Missense_Mutation SNP A A C novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 GREB1 9687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 11706655 11706655 + Silent SNP G G A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 HGC6.3 100128124 hgsc.bcm.edu 37 6 168376967 168376968 + Frame_Shift_Ins INS - - G novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 HGC6.3 100128124 hgsc.bcm.edu 37 6 168376968 168376969 + Frame_Shift_Ins INS - - G novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 HMGCS2 3158 broad.mit.edu;ucsc.edu 37 1 120307055 120307055 + Missense_Mutation SNP T A A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 INO80 54617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41279359 41279359 + Silent SNP G G A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 JAK2 3717 broad.mit.edu;hgsc.bcm.edu 37 9 5126444 5126444 + Nonsense_Mutation SNP G G T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 KIF4A 24137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 69622483 69622483 + Missense_Mutation SNP C C T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 LOC390595 0 broad.mit.edu;ucsc.edu 37 15 65386873 65386873 + Missense_Mutation SNP C A A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 LPHN3 23284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 62800598 62800598 + Missense_Mutation SNP C C A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 MYO10 4651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 16818168 16818168 + Missense_Mutation SNP C C T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 NASP 4678 hgsc.bcm.edu 37 1 46073362 46073362 + Missense_Mutation SNP A A G rs75187774 bycluster TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 NAV3 89795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 78401106 78401106 + Silent SNP C C T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 OGDHL 55753 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 50960187 50960187 + Missense_Mutation SNP G G A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 PAIP2 51247 broad.mit.edu;ucsc.edu 37 5 138699475 138699475 + Missense_Mutation SNP T C C novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 PBRM1 55193 broad.mit.edu;ucsc.edu 37 3 52597493 52597493 + Nonsense_Mutation SNP G A A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G G A G G Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 PIWIL1 9271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 130839159 130839159 + Silent SNP G G T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 PKHD1 5314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 51612746 51612746 + Nonsense_Mutation SNP G G T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 POFUT2 23275 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 46689908 46689908 + Silent SNP G G A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 POLR2F 5435 broad.mit.edu 37 22 38349736 38349736 + Translation_Start_Site SNP C A A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 PTPN6 5777 hgsc.bcm.edu;ucsc.edu 37 12 7064112 7064112 + Frame_Shift_Del DEL C C - novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 RARA 5914 hgsc.bcm.edu 37 17 38510748 38510748 + Silent SNP C C T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 RCSD1 92241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 167663406 167663406 + Missense_Mutation SNP T T A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 RTN1 6252 broad.mit.edu 37 14 60194207 60194207 + Frame_Shift_Del DEL G - - novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 SDC1 6382 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 20403727 20403727 + Silent SNP C C T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 SETD2 29072 broad.mit.edu;ucsc.edu 37 3 47127736 47127736 + Nonsense_Mutation SNP C T T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C C T C C Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 SLC16A1 6566 hgsc.bcm.edu;ucsc.edu 37 1 113460278 113460279 + Frame_Shift_Ins INS - - T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 SLC44A3 126969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 95360437 95360437 + Missense_Mutation SNP A A G novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 SLX4 84464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3641170 3641170 + Nonsense_Mutation SNP C C T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 SRP19 6728 broad.mit.edu 37 5 112228273 112228273 + Missense_Mutation SNP A G G novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 ST6GALNAC2 10610 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74563616 74563616 + Missense_Mutation SNP C C G novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 TBX4 9496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 59557596 59557596 + Missense_Mutation SNP C C A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 TEX2 55852 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62228234 62228234 + Silent SNP G G A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 TH1L 51497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 57561823 57561823 + Missense_Mutation SNP G G A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 TNIK 23043 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 170802027 170802027 + Missense_Mutation SNP T T A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 TPP2 7174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 103275383 103275383 + Silent SNP C C T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 TPR 7175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186310211 186310211 + Silent SNP T T G novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 TRIM34 53840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5655129 5655129 + Missense_Mutation SNP G G C novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 UGGT1 56886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 128928844 128928844 + Missense_Mutation SNP C C A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 ULK4 54986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 41504634 41504634 + Missense_Mutation SNP C C G novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 UPB1 51733 broad.mit.edu;hgsc.bcm.edu 37 22 24906778 24906778 + Silent SNP A A G novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 UTRN 7402 broad.mit.edu;ucsc.edu 37 6 144811221 144811221 + Silent SNP G A A novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 VAC14 55697 broad.mit.edu 37 16 70834811 70834811 + Translation_Start_Site SNP G T T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191488 10191488 + Nonsense_Mutation SNP C C T rs5030818 bycluster TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 WDFY3 23001 hgsc.bcm.edu;ucsc.edu 37 4 85611661 85611662 + Frame_Shift_Ins INS - - T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 XPO5 57510 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43528033 43528033 + Missense_Mutation SNP C C T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 YAP1 10413 broad.mit.edu 37 11 101984953 101984953 + Silent SNP T C C novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 ZNF165 7718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 28054028 28054028 + Missense_Mutation SNP C C G novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 ZNF300 91975 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150276423 150276423 + Silent SNP T T C novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 ZNF300 91975 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150276453 150276453 + Silent SNP T T C novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861 ZNF717 100131827 hgsc.bcm.edu 37 3 75790810 75790811 + Frame_Shift_Ins INS - - T novel TCGA-CJ-5676-01A-11D-1534-10 TCGA-CJ-5676-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2e8aa293-650b-4661-b130-8b70f0949b86 ae90c0a2-1155-4615-a6f4-effe4dd84861