Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACCN4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220402025 220402025 + Silent SNP C C A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 ALDH9A1 223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 165652237 165652237 + Silent SNP G G T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 ALG8 79053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 77817939 77817939 + Silent SNP T T C novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 ARHGAP19 84986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99006064 99006064 + Missense_Mutation SNP A A T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 ARHGEF35 445328 broad.mit.edu 37 7 143884368 143884368 + Missense_Mutation SNP G A A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 C15orf21 0 broad.mit.edu 37 15 45848231 45848231 + RNA DEL T - - novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 C2orf57 165100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 232457795 232457795 + Missense_Mutation SNP G G A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 CAD 790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27465207 27465207 + Missense_Mutation SNP C C G novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 CASP8AP2 9994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 90572531 90572531 + Missense_Mutation SNP T T G novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 CASP8AP2 9994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 90572532 90572532 + Silent SNP T T C novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 CELF3 11189 broad.mit.edu 37 1 151679697 151679697 + Nonsense_Mutation SNP G T T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 CLEC10A 10462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 6981408 6981408 + Missense_Mutation SNP A A G novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 COL6A3 1293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238233432 238233432 + Missense_Mutation SNP A A T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 CTDP1 9150 hgsc.bcm.edu 37 18 77475187 77475188 + In_Frame_Ins INS - - GGA rs35893234 bycluster;by1000genomes TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 CTR9 9646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 10789686 10789686 + Missense_Mutation SNP T T G novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 CUEDC1 404093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 55948719 55948719 + Missense_Mutation SNP A A G novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 DNAH8 1769 broad.mit.edu 37 6 38758105 38758105 + Nonsense_Mutation SNP G A A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 DOCK1 1793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 129160369 129160369 + Missense_Mutation SNP A A T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 DSCR3 10311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 38610801 38610801 + Missense_Mutation SNP A A G novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 DYNC2H1 79659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 103091360 103091360 + Silent SNP C C A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 E2F7 144455 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 77444477 77444477 + Silent SNP C C T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 ESD 2098 broad.mit.edu;hgsc.bcm.edu 37 13 47345584 47345584 + Silent SNP G G A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 FBN2 2201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127637113 127637113 + Missense_Mutation SNP C C T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 FIS1 51024 broad.mit.edu 37 7 100883107 100883107 + Missense_Mutation SNP C T T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 FRY 10129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 32721987 32721987 + Missense_Mutation SNP C C A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 FSTL4 23105 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 132939626 132939626 + Silent SNP G G A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 GALM 130589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 38956797 38956797 + Missense_Mutation SNP A A T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 GIT2 9815 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 110421492 110421492 + Missense_Mutation SNP T T A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 GRIK5 2901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42563630 42563630 + Missense_Mutation SNP C C A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 IGF1R 3480 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 99192822 99192822 + Silent SNP C C T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 ITCH 83737 broad.mit.edu;ucsc.edu 37 20 33026360 33026360 + Silent SNP A G G novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 ITFG2 55846 hgsc.bcm.edu;ucsc.edu 37 12 2929366 2929366 + Frame_Shift_Del DEL T T - novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 KCNG4 93107 broad.mit.edu 37 16 84270394 84270394 + Missense_Mutation SNP G T T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 KIF25 3834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 168443302 168443302 + Silent SNP G G A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 KLHL4 56062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 86921522 86921522 + Silent SNP G G T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 KRTAP19-2 337969 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 31859596 31859596 + Nonsense_Mutation SNP G G T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 LARGE 9215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 33780246 33780246 + Missense_Mutation SNP C C T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 LILRB4 11006 hgsc.bcm.edu 37 19 55179244 55179244 + Frame_Shift_Del DEL G G - novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 LOC100288778 100288778 broad.mit.edu 37 12 88906 88906 + Silent SNP A T T rs17854554 TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 LRIG3 121227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 59276667 59276667 + Silent SNP T T C novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 MAP3K14 9020 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 43347888 43347888 + Silent SNP A A T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 MLC1 23209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50518347 50518347 + Silent SNP G G A rs121908343 alternate_allele TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 MYNN 55892 hgsc.bcm.edu;ucsc.edu 37 3 169496863 169496863 + Frame_Shift_Del DEL G G - novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 NKTR 4820 hgsc.bcm.edu;ucsc.edu 37 3 42678973 42678974 + Frame_Shift_Ins INS - - A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 NMNAT2 23057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183230359 183230359 + Missense_Mutation SNP G G T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 NUPL2 11097 hgsc.bcm.edu 37 7 23221811 23221811 + Missense_Mutation SNP A A G rs145987368 byfrequency TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 OR8U8 504189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56143438 56143438 + Missense_Mutation SNP G G C novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 OR8U8 504189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56143439 56143439 + Silent SNP C C T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 PBLD 64081 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 70056040 70056040 + Missense_Mutation SNP A A C novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 PC 5091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66616396 66616396 + Missense_Mutation SNP C C T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 PER2 8864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 239180147 239180147 + Missense_Mutation SNP A A G novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 POM121L9P 29774 broad.mit.edu 37 22 24660701 24660701 + RNA DEL A - - rs71320760 TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 POMGNT1 55624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46662429 46662429 + Missense_Mutation SNP C C A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 PRTG 283659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 55965850 55965850 + Missense_Mutation SNP C C T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 PTPN6 5777 broad.mit.edu 37 12 7069507 7069507 + Missense_Mutation SNP T C C novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 PVRIG 79037 broad.mit.edu 37 7 99818579 99818579 + Missense_Mutation SNP T C C novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 PXDNL 137902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 52361653 52361653 + Silent SNP G G C novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 RAD52 5893 hgsc.bcm.edu;ucsc.edu 37 12 1034639 1034639 + Frame_Shift_Del DEL A A - novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 RBMXL3 139804 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 114424200 114424200 + Missense_Mutation SNP G G T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 RTN4IP1 84816 broad.mit.edu;ucsc.edu 37 6 107067108 107067108 + Missense_Mutation SNP C A A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 SDCCAG1 0 broad.mit.edu;ucsc.edu 37 14 50298067 50298067 + Missense_Mutation SNP A C C novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 SELPLG 6404 hgsc.bcm.edu 37 12 109017651 109017680 + Frame_Shift_Del DEL GAGTGGTCTGTGCCTCCGTGGGCACTGGTT GAGTGGTCTGTGCCTCCGTGGGCACTGGTT - novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 GAGTGGTCTGTGCCTCCGTGGGCACTGGTT GAGTGGTCTGTGCCTCCGTGGGCACTGGTT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 SETD2 29072 broad.mit.edu;ucsc.edu 37 3 47144868 47144868 + Missense_Mutation SNP G A A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G G A G G Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 SOS2 6655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 50597307 50597307 + Silent SNP T T A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 SVIL 6840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 29752498 29752498 + Missense_Mutation SNP T T C rs150671744 byfrequency;alternate_allele TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 THAP4 51078 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 242545863 242545863 + Silent SNP C C A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 TJAP1 93643 broad.mit.edu;ucsc.edu 37 6 43469319 43469319 + Missense_Mutation SNP C A A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 TMEM63C 57156 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 77723017 77723017 + Missense_Mutation SNP C C T rs185516701 by1000genomes TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 TXNDC16 57544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 52922174 52922174 + Silent SNP G G C novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 VCAN 1462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 82836753 82836753 + Missense_Mutation SNP C C T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 VCX3B 425054 hgsc.bcm.edu 37 X 8434347 8434376 + In_Frame_Del DEL GAACCACTGAGTCAGGAGAGCGAGATGGAA GAACCACTGAGTCAGGAGAGCGAGATGGAA - novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 GAACCACTGAGTCAGGAGAGCGAGATGGAA GAACCACTGAGTCAGGAGAGCGAGATGGAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 ZFY 7544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 Y 2829189 2829189 + Missense_Mutation SNP G G A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 ZNF175 7728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52090388 52090388 + Missense_Mutation SNP G G T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 ZNF570 148268 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 37967302 37967302 + Missense_Mutation SNP G G A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 ZNF678 339500 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 227842449 227842449 + Silent SNP A A T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 ZNF707 286075 broad.mit.edu;ucsc.edu 37 8 144776493 144776493 + Silent SNP C T T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 ZNF727 442319 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 63537854 63537854 + Nonsense_Mutation SNP A A T novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14 ZNF770 54989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 35275034 35275034 + Missense_Mutation SNP G G A novel TCGA-CJ-5671-01A-11D-1534-10 TCGA-CJ-5671-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b1084bb-3fb2-4f3f-9ca7-7108b0f77994 474c3c87-dc39-4106-850a-8d802a30eb14