Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAMTS18 170692 broad.mit.edu;hgsc.bcm.edu 37 16 77387747 77387747 + Silent SNP C C T novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd ADH4 127 hgsc.bcm.edu;ucsc.edu 37 4 100047771 100047771 + Frame_Shift_Del DEL T T - novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd AK8 158067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 135602886 135602886 + Missense_Mutation SNP A A T novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108170468 108170468 + Missense_Mutation SNP T T G novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 T T T G T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd BAG6 7917 hgsc.bcm.edu 37 6 31609641 31609642 + Frame_Shift_Ins INS - - G novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd BARD1 580 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 215657073 215657073 + Missense_Mutation SNP C C G novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd CACNA1F 778 broad.mit.edu;hgsc.bcm.edu 37 X 49066823 49066823 + Missense_Mutation SNP G G A novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd CCDC76 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100606486 100606486 + Missense_Mutation SNP G G A novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd CWC15 51503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 94704596 94704596 + Missense_Mutation SNP A A C novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd DNMT3B 1789 hgsc.bcm.edu 37 20 31384616 31384617 + Frame_Shift_Ins INS - - G novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd DSCAM 1826 hgsc.bcm.edu;ucsc.edu 37 21 41414412 41414412 + Silent SNP G G A novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd DYM 54808 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 46906085 46906085 + Missense_Mutation SNP C C G novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd ELFN2 114794 broad.mit.edu 37 22 37770332 37770332 + Missense_Mutation SNP C T T novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd F5 2153 broad.mit.edu;hgsc.bcm.edu 37 1 169510307 169510307 + Missense_Mutation SNP G G C novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd FOXQ1 94234 hgsc.bcm.edu;ucsc.edu 37 6 1313357 1313357 + Silent SNP T T C novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd FSCB 84075 broad.mit.edu;hgsc.bcm.edu 37 14 44973940 44973940 + Missense_Mutation SNP C C G novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd GAB1 2549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 144336751 144336751 + Missense_Mutation SNP G G T novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd GDF11 10220 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56142619 56142619 + Nonsense_Mutation SNP C C G novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd GPM6A 2823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 176622807 176622807 + Missense_Mutation SNP G G A novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd ITGA11 22801 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 68642956 68642956 + Missense_Mutation SNP T T A novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd JHDM1D 80853 hgsc.bcm.edu;ucsc.edu 37 7 139798703 139798703 + Frame_Shift_Del DEL C C - novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd KRT73 319101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53012201 53012201 + Silent SNP G G T novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd LOC100133050 100133050 broad.mit.edu 37 5 99715528 99715528 + RNA SNP C T T rs71636707 TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd LOC222699 0 broad.mit.edu 37 6 28185441 28185441 + RNA SNP A G G novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd LOC442308 442308 broad.mit.edu 37 7 55714466 55714466 + RNA SNP C T T novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd MOSPD3 64598 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100211278 100211278 + Missense_Mutation SNP C C A novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd NBPF3 84224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 21795329 21795329 + Silent SNP C C G novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C C G C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd NLRP8 126205 broad.mit.edu;hgsc.bcm.edu 37 19 56459316 56459316 + Silent SNP C C T novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd NNT 23530 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 43619222 43619222 + Splice_Site SNP G G A novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd NRG2 9542 broad.mit.edu 37 5 139422020 139422020 + Missense_Mutation SNP G A A novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd OR2B3 442184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 29054943 29054943 + Missense_Mutation SNP A A G novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd PLEKHA7 144100 hgsc.bcm.edu 37 11 16876457 16876457 + Silent SNP C C T novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd PLEKHO2 80301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65157582 65157582 + Missense_Mutation SNP C C T novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd PPP1R14B 26472 broad.mit.edu 37 11 64013926 64013926 + Missense_Mutation SNP A G G novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd PTCD3 55037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 86359530 86359530 + Silent SNP A A G novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd RAI1 10743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 17699836 17699836 + Missense_Mutation SNP A A G novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd SLFN12L 100506736 broad.mit.edu;ucsc.edu 37 17 33802445 33802445 + Missense_Mutation SNP G T T novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd SNCA 6622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 90743427 90743427 + Silent SNP A A G novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd TADA2A 6871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 35836946 35836946 + Nonsense_Mutation SNP C C A novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd TFAP2C 7022 hgsc.bcm.edu;ucsc.edu 37 20 55208541 55208541 + Missense_Mutation SNP A A G novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd TG 7038 broad.mit.edu;hgsc.bcm.edu 37 8 134034366 134034366 + Missense_Mutation SNP G G A rs121912650 TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd TGM5 9333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43552495 43552495 + Missense_Mutation SNP C C T novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd TRIM28 10155 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 59057138 59057138 + Missense_Mutation SNP C C G novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd ZBTB40 9923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 22816881 22816881 + Missense_Mutation SNP A A C novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd ZNF236 7776 hgsc.bcm.edu;ucsc.edu 37 18 74624247 74624247 + Frame_Shift_Del DEL G G - novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd ZNF407 55628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 72345031 72345031 + Missense_Mutation SNP C C A novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd GUCY2F 2986 broad.mit.edu 37 X 108631719 108631719 + Silent SNP T A A novel TCGA-CJ-4904-01A-02D-1429-08 TCGA-CJ-4904-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I WXS 454 . . Illumina GAIIx 9bedcded-0c33-4199-bdce-18681595c2d8 b246a266-4944-4bc7-849f-5936ecbfb8cd