Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA10 10349 hgsc.bcm.edu;ucsc.edu 37 17 67212477 67212477 + Missense_Mutation SNP T T C novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba ACTR5 79913 hgsc.bcm.edu 37 20 37394094 37394094 + Missense_Mutation SNP T T G novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba AQP7 364 hgsc.bcm.edu 37 9 33385667 33385667 + Silent SNP A A G rs79779983 bycluster TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba ATP1A1 476 hgsc.bcm.edu;ucsc.edu 37 1 116936278 116936278 + Silent SNP T T C novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba B4GALNT2 124872 hgsc.bcm.edu;ucsc.edu 37 17 47241500 47241500 + Missense_Mutation SNP C C A novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba C12orf43 64897 hgsc.bcm.edu;ucsc.edu 37 12 121444125 121444125 + Silent SNP A A G novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba C20orf106 0 hgsc.bcm.edu;ucsc.edu 37 20 55100907 55100914 + Frame_Shift_Del DEL AAAGAAAA AAAGAAAA - novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 AAAGAAAA AAAGAAAA . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba C5orf23 0 hgsc.bcm.edu;ucsc.edu 37 5 32789785 32789785 + Missense_Mutation SNP A A G novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba CAPZB 832 hgsc.bcm.edu 37 1 19683945 19683945 + Missense_Mutation SNP A A C novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba CATSPERB 79820 hgsc.bcm.edu;ucsc.edu 37 14 92126245 92126245 + Missense_Mutation SNP A A T novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba CDH3 1001 hgsc.bcm.edu 37 16 68721570 68721570 + Missense_Mutation SNP A A C novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba CHD2 1106 hgsc.bcm.edu 37 15 93492306 93492306 + Missense_Mutation SNP A A C novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba COL7A1 1294 hgsc.bcm.edu 37 3 48623284 48623284 + Silent SNP C C T novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba CRB1 23418 hgsc.bcm.edu;ucsc.edu 37 1 197396821 197396821 + Missense_Mutation SNP A A T novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba CSMD2 114784 hgsc.bcm.edu 37 1 34312501 34312501 + Missense_Mutation SNP G G T novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba DOCK10 55619 hgsc.bcm.edu 37 2 225684201 225684201 + Missense_Mutation SNP T T A novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba FANCI 55215 hgsc.bcm.edu 37 15 89837146 89837146 + Missense_Mutation SNP G G C novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba FRYL 285527 hgsc.bcm.edu;ucsc.edu 37 4 48542918 48542918 + Missense_Mutation SNP C C G novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba GPR158 57512 hgsc.bcm.edu;ucsc.edu 37 10 25701402 25701402 + Missense_Mutation SNP G G T novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba HEATR1 55127 hgsc.bcm.edu;ucsc.edu 37 1 236714231 236714231 + Missense_Mutation SNP G G C rs145439234 alternate_allele TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba HSPA4 3308 hgsc.bcm.edu 37 5 132424179 132424179 + Missense_Mutation SNP T T A novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba KCTD16 57528 hgsc.bcm.edu 37 5 143586839 143586839 + Missense_Mutation SNP A A G novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba KLK3 354 hgsc.bcm.edu;ucsc.edu 37 19 51363270 51363270 + Missense_Mutation SNP G G C novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba MTMR15 0 hgsc.bcm.edu;ucsc.edu 37 15 31206244 31206244 + Silent SNP C C T novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba MUC16 94025 hgsc.bcm.edu;ucsc.edu 37 19 9067458 9067458 + Missense_Mutation SNP C C T novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C C T C C Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba NPRL2 10641 hgsc.bcm.edu 37 3 50387111 50387111 + Silent SNP A A G novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba OSGIN1 29948 hgsc.bcm.edu 37 16 83984776 83984776 + Missense_Mutation SNP A A C rs28555129 bycluster;byfrequency;by1000genomes TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52643504 52643504 + Nonsense_Mutation SNP T T A novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T T A T T Unknown Valid Somatic Phase_I WXS 454 SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba PDE4C 5143 hgsc.bcm.edu 37 19 18322690 18322691 + Frame_Shift_Ins INS - - A novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 - - . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba PDZD2 23037 hgsc.bcm.edu;ucsc.edu 37 5 32061215 32061215 + Missense_Mutation SNP T T C novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T T C T T Unknown Valid Somatic Phase_I WXS 454 SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba PGPEP1L 145814 hgsc.bcm.edu 37 15 99511807 99511808 + Frame_Shift_Ins INS - - T novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 - - . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba PICK1 9463 hgsc.bcm.edu;ucsc.edu 37 22 38467740 38467740 + Missense_Mutation SNP A A T novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba PNPLA3 80339 hgsc.bcm.edu;ucsc.edu 37 22 44322980 44322980 + Missense_Mutation SNP T T G novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba PRX 57716 hgsc.bcm.edu 37 19 40902612 40902612 + Silent SNP C C G novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba PTEN 5728 hgsc.bcm.edu;ucsc.edu 37 10 89690806 89690806 + Nonsense_Mutation SNP T T A novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T T A T T Unknown Valid Somatic Phase_I WXS PGM SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba PTPN11 5781 hgsc.bcm.edu;ucsc.edu 37 12 112892409 112892409 + Silent SNP T T C novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba R3HDML 140902 hgsc.bcm.edu;ucsc.edu 37 20 42969922 42969922 + Silent SNP C C T novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba RPN2 6185 hgsc.bcm.edu;ucsc.edu 37 20 35842247 35842247 + Silent SNP G G A novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba SEMA3A 10371 hgsc.bcm.edu 37 7 83764187 83764187 + Missense_Mutation SNP C C T novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba SH3BP4 23677 hgsc.bcm.edu 37 2 235950909 235950909 + Missense_Mutation SNP G G T novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba SLC9A8 23315 hgsc.bcm.edu 37 20 48429462 48429462 + Missense_Mutation SNP G G T rs76846045 bycluster;byfrequency;by1000genomes TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba SNAI2 6591 hgsc.bcm.edu;ucsc.edu 37 8 49833764 49833764 + Missense_Mutation SNP C C T novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba SON 6651 hgsc.bcm.edu;ucsc.edu 37 21 34922635 34922635 + Missense_Mutation SNP G G T novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba STK11IP 114790 hgsc.bcm.edu 37 2 220467482 220467482 + Missense_Mutation SNP G G T novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba USP15 9958 hgsc.bcm.edu;ucsc.edu 37 12 62777931 62777931 + Missense_Mutation SNP C C A novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba ZMYM2 7750 hgsc.bcm.edu;ucsc.edu 37 13 20656244 20656244 + Missense_Mutation SNP G G A novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba ZNF483 158399 hgsc.bcm.edu;ucsc.edu 37 9 114304001 114304001 + Silent SNP A A G novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba ZSWIM5 57643 hgsc.bcm.edu;ucsc.edu 37 1 45484291 45484291 + Silent SNP G G A novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba KDM5C 8242 ucsc.edu 37 X 53250081 53250082 + Frame_Shift_Del DEL AA AA - novel TCGA-CJ-4871-01A-01D-1373-10 TCGA-CJ-4871-11A-01D-1373-10 AA AA AA - AA AA Unknown Valid Somatic . WXS PGM . . SOLID 2fa24cc6-b7f4-4e68-987d-5338af3c9b35 249b12b1-3996-487f-8785-f4e3d64db9ba