Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACTN2 88 broad.mit.edu;ucsc.edu 37 1 236911030 236911030 + Missense_Mutation SNP G T T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ADAM6 8755 broad.mit.edu 37 14 106539313 106539313 + RNA SNP G A A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ADAM6 8755 broad.mit.edu 37 14 106539361 106539361 + RNA SNP C A A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ADAM6 8755 broad.mit.edu 37 14 106539367 106539367 + RNA SNP C G G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ADAM6 8755 broad.mit.edu 37 14 106919168 106919168 + RNA DEL C - - rs139643696 bycluster;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ADCY7 113 hgsc.bcm.edu 37 16 50340985 50340986 + Frame_Shift_Ins INS - - C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 AHNAK2 113146 hgsc.bcm.edu 37 14 105412138 105412138 + Missense_Mutation SNP A A G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 AHNAK2 113146 hgsc.bcm.edu 37 14 105412554 105412554 + Silent SNP T T G rs12436986 bycluster;byhapmap;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 AHNAK2 113146 hgsc.bcm.edu 37 14 105419047 105419047 + Missense_Mutation SNP A A C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 APOBEC3H 164668 hgsc.bcm.edu 37 22 39496323 39496325 + In_Frame_Del DEL AAC AAC - rs140936762 bycluster;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 AAC AAC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 AQP7 364 hgsc.bcm.edu 37 9 33385784 33385784 + Missense_Mutation SNP C C G rs114937176 TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 AQP7 364 hgsc.bcm.edu 37 9 33385815 33385815 + Missense_Mutation SNP T T C rs62542745 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ARHGAP44 9912 hgsc.bcm.edu 37 17 12847385 12847385 + Splice_Site SNP G G T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ARHGEF1 9138 broad.mit.edu;hgsc.bcm.edu 37 19 42408211 42408211 + Missense_Mutation SNP T T G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ARMC10 83787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 102716238 102716238 + Missense_Mutation SNP G G T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ASCC3 10973 broad.mit.edu 37 6 100966004 100966005 + Frame_Shift_Del DEL CA - - novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 CA CA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ATF1 466 broad.mit.edu 37 12 51213515 51213515 + Frame_Shift_Del DEL G - - novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 AVL9 23080 broad.mit.edu 37 7 32615623 32615623 + Missense_Mutation SNP A G G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 BAHCC1 57597 hgsc.bcm.edu 37 17 79424537 79424537 + Silent SNP C C T rs34224936 bycluster;byfrequency;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 BCAN 63827 broad.mit.edu;hgsc.bcm.edu 37 1 156622274 156622274 + Missense_Mutation SNP C C G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 BRCA1 672 broad.mit.edu;ucsc.edu 37 17 41234582 41234582 + Missense_Mutation SNP G C C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 C14orf4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 77491962 77491962 + Missense_Mutation SNP G G A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 C19orf33 64073 hgsc.bcm.edu 37 19 38795587 38795587 + Missense_Mutation SNP A A G rs76762399 bycluster;byfrequency TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 C9orf11 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 27296984 27296984 + Missense_Mutation SNP T T C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 CBX3 11335 hgsc.bcm.edu 37 7 26245986 26245986 + Splice_Site SNP A A T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 CCDC74A 90557 broad.mit.edu;hgsc.bcm.edu 37 2 132285695 132285695 + Missense_Mutation SNP T T G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 CD7 924 broad.mit.edu 37 17 80274162 80274162 + Frame_Shift_Del DEL G - - novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 CDC27 996 hgsc.bcm.edu 37 17 45234350 45234350 + Silent SNP C C T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 CDH7 1005 broad.mit.edu;ucsc.edu 37 18 63430106 63430106 + Missense_Mutation SNP C G G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 CNGA2 1260 broad.mit.edu;ucsc.edu 37 X 150912325 150912325 + Silent SNP G A A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 CYFIP1 23191 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 22928512 22928512 + Splice_Site SNP T T C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 DDX11 1663 hgsc.bcm.edu 37 12 31242358 31242358 + Missense_Mutation SNP G G A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 DNAH9 1770 hgsc.bcm.edu;ucsc.edu 37 17 11795233 11795233 + Missense_Mutation SNP A A T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 EBPL 84650 broad.mit.edu 37 13 50235160 50235160 + Missense_Mutation SNP G C C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 EPPK1 83481 hgsc.bcm.edu 37 8 144940649 144940649 + Missense_Mutation SNP G G A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 EPS8 2059 broad.mit.edu 37 12 15803929 15803929 + Missense_Mutation SNP G A A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ERBB2 2064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37873629 37873629 + Silent SNP C C T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ESYT3 83850 hgsc.bcm.edu;ucsc.edu 37 3 138170931 138170942 + Frame_Shift_Del DEL GGTAAGGCCGCT GGTAAGGCCGCT - novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 GGTAAGGCCGCT GGTAAGGCCGCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 FAM186A 121006 hgsc.bcm.edu 37 12 50746022 50746022 + Silent SNP C C G rs7304692 bycluster;byfrequency;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 FERD3L 222894 hgsc.bcm.edu 37 7 19184746 19184747 + In_Frame_Ins INS - - TCT rs34966908 bycluster;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 FLJ40330 0 broad.mit.edu 37 2 89100619 89100619 + RNA SNP C T T rs75347118 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 GART 2618 hgsc.bcm.edu 37 21 34882122 34882122 + Frame_Shift_Del DEL T T - novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 GH2 2689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61958132 61958132 + Missense_Mutation SNP C C G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 GOLGA6L10 647042 broad.mit.edu 37 15 83014106 83014106 + Silent SNP T C C rs62009901 TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 GOLGA6L5 374650 broad.mit.edu 37 15 85056047 85056047 + RNA SNP C G G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 GPR179 440435 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36482951 36482951 + Missense_Mutation SNP T T G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 H2AFV 94239 hgsc.bcm.edu 37 7 44874131 44874131 + Missense_Mutation SNP A A G rs114398265 byfrequency TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 HGC6.3 100128124 hgsc.bcm.edu 37 6 168376840 168376840 + Missense_Mutation SNP T T C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 HLA-B 3106 hgsc.bcm.edu 37 6 31323128 31323128 + Silent SNP A A G rs41551014 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 HLA-B 3106 hgsc.bcm.edu 37 6 31323143 31323143 + Silent SNP T T C rs41546016 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 HLA-B 3106 hgsc.bcm.edu 37 6 31323202 31323202 + Missense_Mutation SNP T T C rs41545916 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 HLA-B 3106 hgsc.bcm.edu 37 6 31323215 31323215 + Silent SNP T T C rs41541216 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 HLA-C 3107 hgsc.bcm.edu 37 6 31237802 31237802 + Missense_Mutation SNP A A G rs17413387 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 HPS5 11234 broad.mit.edu;ucsc.edu 37 11 18327003 18327003 + Nonsense_Mutation SNP G A A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 HRC 3270 hgsc.bcm.edu 37 19 49657754 49657754 + Silent SNP G G A rs145933641 byfrequency TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 IRS1 3667 broad.mit.edu 37 2 227660037 227660037 + Missense_Mutation SNP G A A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ITGA11 22801 broad.mit.edu;hgsc.bcm.edu 37 15 68595444 68595444 + Missense_Mutation SNP G G C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 KCND2 3751 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 119915314 119915314 + Missense_Mutation SNP G G A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 KIAA0368 23392 broad.mit.edu 37 9 114145539 114145539 + Missense_Mutation SNP A G G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 KLHL6 89857 broad.mit.edu;hgsc.bcm.edu 37 3 183217550 183217550 + Silent SNP G G T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 KRT3 3850 hgsc.bcm.edu 37 12 53189410 53189410 + Silent SNP A A C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 KRT3 3850 hgsc.bcm.edu 37 12 53189427 53189427 + Missense_Mutation SNP C C G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 KRTAP4-1 85285 hgsc.bcm.edu 37 17 39340729 39340729 + Silent SNP G G A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 KRTAP5-4 387267 hgsc.bcm.edu 37 11 1642703 1642703 + Silent SNP A A G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 KRTAP5-8 57830 hgsc.bcm.edu 37 11 71249558 71249558 + Missense_Mutation SNP T T A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 KRTAP9-2 83899 hgsc.bcm.edu 37 17 39383027 39383027 + Missense_Mutation SNP G G T rs71371478 TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 LAIR1 3903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54872809 54872809 + Silent SNP C C T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 LILRA6 79168 hgsc.bcm.edu 37 19 54745508 54745508 + Missense_Mutation SNP G G A rs61734497 byfrequency TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 LOC100124692 100124692 broad.mit.edu 37 7 141895981 141895982 + RNA INS - G G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 LOC283922 283922 broad.mit.edu 37 16 74372644 74372644 + Silent SNP A G G rs2549260 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 LOC374491 0 broad.mit.edu 37 13 25161438 25161438 + RNA SNP T A A rs3869320 TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 LRRC46 90506 broad.mit.edu;hgsc.bcm.edu 37 17 45914323 45914323 + Missense_Mutation SNP C C T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 LUZP2 338645 broad.mit.edu 37 11 25100121 25100121 + Missense_Mutation SNP T G G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 MADCAM1 8174 broad.mit.edu 37 19 501762 501762 + Missense_Mutation SNP A C C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 MADCAM1 8174 hgsc.bcm.edu 37 19 501767 501767 + Missense_Mutation SNP C C T rs78245161 TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 MAP2K3 5606 hgsc.bcm.edu 37 17 21204187 21204187 + Missense_Mutation SNP G G T rs56067280 bycluster;byfrequency;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 MAP2K3 5606 hgsc.bcm.edu 37 17 21204192 21204192 + Missense_Mutation SNP C C T rs56216806 bycluster;byfrequency;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 MUC17 140453 hgsc.bcm.edu 37 7 100684091 100684092 + Frame_Shift_Ins INS - - C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 MUC2 4583 hgsc.bcm.edu 37 11 1093135 1093135 + Missense_Mutation SNP A A C rs56080332 TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 MUC4 4585 hgsc.bcm.edu 37 3 195510030 195510030 + Silent SNP C C G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 MUC6 4588 hgsc.bcm.edu 37 11 1017074 1017074 + Silent SNP A A G rs79277162 TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 MUC6 4588 hgsc.bcm.edu 37 11 1018048 1018048 + Missense_Mutation SNP A A G rs12787400 TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 MUC6 4588 hgsc.bcm.edu 37 11 1018059 1018059 + Missense_Mutation SNP C C T rs78336072 TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 MUC6 4588 hgsc.bcm.edu 37 11 1018382 1018382 + Silent SNP A A G rs76138285 TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 MYLK3 91807 broad.mit.edu;hgsc.bcm.edu 37 16 46766320 46766320 + Missense_Mutation SNP C C G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 N4BP2 55728 broad.mit.edu 37 4 40121716 40121716 + Frame_Shift_Del DEL G - - novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 NBPF10 100132406 broad.mit.edu 37 1 145301802 145301802 + Silent SNP C G G rs6690575 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 NLRP5 126206 broad.mit.edu;ucsc.edu 37 19 56515289 56515289 + Silent SNP A G G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 OR10A5 144124 broad.mit.edu 37 11 6867462 6867462 + Silent SNP G A A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 OR2T12 127064 hgsc.bcm.edu 37 1 248458717 248458717 + Missense_Mutation SNP C C G rs71538183 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 OTX1 5013 broad.mit.edu;hgsc.bcm.edu 37 2 63283088 63283088 + Silent SNP C C A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 PABPC1 26986 hgsc.bcm.edu 37 8 101730036 101730037 + Frame_Shift_Ins INS - - C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 PCMTD1 115294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 52733037 52733037 + Silent SNP C C T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 PDPR 55066 hgsc.bcm.edu 37 16 70154480 70154480 + Missense_Mutation SNP A A G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 PER2 8864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 239186456 239186456 + Missense_Mutation SNP T T C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 PLA2G4B 100137049 broad.mit.edu;hgsc.bcm.edu 37 15 42132809 42132809 + Missense_Mutation SNP G G C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 PLCH1 23007 broad.mit.edu;ucsc.edu 37 3 155199834 155199834 + Silent SNP A G G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 PLK1S1 55857 broad.mit.edu 37 20 21143767 21143767 + Frame_Shift_Del DEL A - - novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 PRB1 5542 hgsc.bcm.edu 37 12 11506464 11506464 + Silent SNP C C T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 PRG4 23572 hgsc.bcm.edu 37 1 186276624 186276624 + Silent SNP A A G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 PRR21 643905 hgsc.bcm.edu 37 2 240982219 240982219 + Missense_Mutation SNP A A G rs74006013 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 PTCD1 26024 broad.mit.edu;hgsc.bcm.edu 37 7 99022964 99022964 + Silent SNP C C T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 PTPRS 5802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 5214437 5214437 + Nonsense_Mutation SNP G G A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 RASGRP4 115727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38904046 38904046 + Nonsense_Mutation SNP A A T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 RBM33 155435 broad.mit.edu 37 7 155473566 155473567 + Frame_Shift_Del DEL AG - - novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 RBMXL1 494115 hgsc.bcm.edu 37 1 89448608 89448608 + Missense_Mutation SNP G G A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 RHOQ 23433 broad.mit.edu 37 2 46803262 46803262 + Missense_Mutation SNP A G G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 RPH3A 22895 hgsc.bcm.edu 37 12 113314465 113314465 + Missense_Mutation SNP C C T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 RPS6KC1 26750 broad.mit.edu;ucsc.edu 37 1 213415458 213415458 + Missense_Mutation SNP A G G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 RUVBL1 8607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 127816145 127816145 + Silent SNP G G T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 SETX 23064 hgsc.bcm.edu;ucsc.edu 37 9 135210042 135210042 + Frame_Shift_Del DEL T T - novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 SLC6A10P 386757 broad.mit.edu 37 16 32890622 32890622 + Missense_Mutation SNP T G G rs689942 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 SLC6A17 388662 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110709686 110709686 + Silent SNP C C T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 TBC1D4 9882 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 75936707 75936707 + Nonsense_Mutation SNP T T A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 TCHH 7062 hgsc.bcm.edu 37 1 152082257 152082257 + Missense_Mutation SNP C C G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 TCHH 7062 hgsc.bcm.edu 37 1 152082376 152082376 + Missense_Mutation SNP C C A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 TCHH 7062 hgsc.bcm.edu 37 1 152082484 152082484 + Missense_Mutation SNP G G T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 TICAM1 148022 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 4817211 4817211 + Missense_Mutation SNP T T A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 TMCO3 55002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 114149939 114149939 + Missense_Mutation SNP G G A rs139520979 by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 TMEM37 140738 hgsc.bcm.edu 37 2 120194651 120194652 + In_Frame_Ins INS - - GTGTGC rs3217464 bycluster TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 TPRX1 284355 hgsc.bcm.edu 37 19 48305658 48305658 + Missense_Mutation SNP G G A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 TTC12 54970 broad.mit.edu;ucsc.edu 37 11 113205696 113205696 + Missense_Mutation SNP A C C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 UBB 7314 hgsc.bcm.edu 37 17 16285560 16285560 + Silent SNP T T C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 UNC119 9094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26875651 26875651 + Missense_Mutation SNP G G A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 Unknown 0 broad.mit.edu 37 1 148891643 148891643 + RNA SNP A G G rs71219755 TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 Unknown 0 broad.mit.edu 37 12 92116 92116 + Missense_Mutation SNP C T T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 Unknown 0 broad.mit.edu 37 15 84945393 84945393 + RNA SNP C T T rs437422 byfrequency;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 Unknown 0 broad.mit.edu 37 17 43625348 43625348 + Missense_Mutation SNP C T T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 Unknown 0 broad.mit.edu 37 9 68413654 68413654 + RNA SNP G A A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 UQCRFS1 7386 broad.mit.edu 37 19 29699033 29699033 + Missense_Mutation SNP T C C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 USP51 158880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 55513642 55513642 + Missense_Mutation SNP C C A novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 VCX2 51480 hgsc.bcm.edu 37 X 8138165 8138165 + Missense_Mutation SNP C C G rs1058237 bycluster;byfrequency;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 VCX2 51480 hgsc.bcm.edu 37 X 8138170 8138170 + Missense_Mutation SNP C C G rs75657421 byfrequency;by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 VCX2 51480 hgsc.bcm.edu 37 X 8138171 8138171 + Missense_Mutation SNP T T C rs78723459 by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 VCX2 51480 hgsc.bcm.edu 37 X 8138182 8138182 + Missense_Mutation SNP A A G rs41305169 by1000genomes TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 WASH7P 653635 broad.mit.edu 37 1 14976 14976 + RNA SNP G A A rs77117975 byfrequency TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 WNK3 65267 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 54319687 54319687 + Nonsense_Mutation SNP A A T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 XPOT 11260 broad.mit.edu 37 12 64812710 64812710 + Missense_Mutation SNP T C C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 XPOT 11260 broad.mit.edu 37 12 64812808 64812808 + Silent SNP C G G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 XPOT 11260 broad.mit.edu;ucsc.edu 37 12 64812728 64812728 + Missense_Mutation SNP A G G novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ZMYM4 9202 broad.mit.edu;ucsc.edu 37 1 35853066 35853066 + Silent SNP T C C novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ZNF286B 729288 broad.mit.edu;ucsc.edu 37 17 18584142 18584142 + Missense_Mutation SNP A G G rs2654297 TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ZNF434 0 broad.mit.edu;ucsc.edu 37 16 3432991 3432991 + Missense_Mutation SNP C T T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ZNF493 284443 broad.mit.edu 37 19 21607481 21607482 + Frame_Shift_Del DEL AA - - novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 AA AA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ZNF610 162963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52857566 52857566 + Silent SNP C C T novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ZNF643 0 broad.mit.edu 37 1 40922615 40922616 + Splice_Site DEL AG - - novel TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195 ZSWIM3 140831 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44506358 44506358 + Silent SNP G G A rs149497744 TCGA-CJ-4643-01A-02D-1386-10 TCGA-CJ-4643-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5e00e420-94fd-4115-9cd9-cef24f6df0eb 0e427f57-9cae-40dc-9a75-6387da9af195