Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACP5 54 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11687390 11687390 + Missense_Mutation SNP G G A novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 ADAMTS9 56999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 64579996 64579996 + Missense_Mutation SNP C C T novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 AIFM1 9131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129265759 129265759 + Silent SNP G G A rs146608893 TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 ANK3 288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 61830323 61830323 + Missense_Mutation SNP A A G novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 B3GALT2 8707 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 193150003 193150003 + Missense_Mutation SNP T T G novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 C14orf159 80017 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 91636352 91636352 + Missense_Mutation SNP G G T novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 C22orf9 0 broad.mit.edu 37 22 45601765 45601765 + Missense_Mutation SNP A C C novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 C6orf114 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 13470345 13470345 + Silent SNP T T C novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 C7 730 broad.mit.edu 37 5 40959677 40959677 + Missense_Mutation SNP C T T novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 CACNB1 782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37341384 37341384 + Silent SNP C C T novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 CIZ1 25792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 130938657 130938657 + Missense_Mutation SNP G G A novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 CNTNAP4 85445 broad.mit.edu 37 16 76486631 76486631 + Missense_Mutation SNP A C C rs150449060 alternate_allele TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 COL4A5 1287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 107868987 107868987 + Silent SNP T T G novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 DNAH1 25981 broad.mit.edu;ucsc.edu 37 3 52360871 52360871 + Frame_Shift_Del DEL C - - novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 EFNA1 1942 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155104091 155104091 + Silent SNP A A G novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 GPRASP1 9737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 101910199 101910199 + Missense_Mutation SNP G G T novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 HGS 9146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 79667601 79667601 + Missense_Mutation SNP T T C novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 HPGD 3248 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 175443219 175443219 + Splice_Site SNP C C A novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 KCNJ3 3760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 155555495 155555495 + Missense_Mutation SNP G G T novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 LRCH2 57631 broad.mit.edu;hgsc.bcm.edu 37 X 114398272 114398272 + Missense_Mutation SNP G G T novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 LRRK1 79705 broad.mit.edu;hgsc.bcm.edu 37 15 101528945 101528945 + Silent SNP G G A novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 MSH6 2956 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 48026389 48026389 + Missense_Mutation SNP C C A novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 MTOR 2475 broad.mit.edu;hgsc.bcm.edu 37 1 11190694 11190694 + Silent SNP G G A novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 NFASC 23114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 204971841 204971841 + Missense_Mutation SNP T T C novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 NPHP4 261734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 5934998 5934998 + Missense_Mutation SNP C C G novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 NUP205 23165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 135261060 135261060 + Missense_Mutation SNP T T C novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 PACSIN1 29993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 34499375 34499375 + Splice_Site SNP A A C novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 PCDHA6 56142 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140209867 140209867 + Missense_Mutation SNP G G A novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 PLEKHA7 144100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 16838611 16838611 + Silent SNP G G A novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 PPM1L 151742 hgsc.bcm.edu 37 3 160783277 160783277 + Frame_Shift_Del DEL G G - novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 PTCHD2 57540 hgsc.bcm.edu 37 1 11589932 11589933 + Frame_Shift_Ins INS - - A novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 PTPRB 5787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 70965011 70965011 + Silent SNP C C T novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 RIMS1 22999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 72974723 72974723 + Silent SNP A A G novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 RRP12 23223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99116876 99116876 + Missense_Mutation SNP T T C novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 SALL1 6299 hgsc.bcm.edu;ucsc.edu 37 16 51175662 51175662 + Missense_Mutation SNP G G C novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 SLC2A5 6518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 9118229 9118229 + Silent SNP A A T novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 SLC6A14 11254 hgsc.bcm.edu 37 X 115572174 115572175 + Frame_Shift_Ins INS - - G novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 SLITRK6 84189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 86370342 86370342 + Missense_Mutation SNP G G A novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 TCERG1L 256536 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 132965070 132965070 + Missense_Mutation SNP T T A novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 TERT 7015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 1272327 1272327 + Silent SNP C C A novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 TGM5 9333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43552389 43552389 + Silent SNP G G A novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 THAP11 57215 hgsc.bcm.edu 37 16 67876820 67876820 + Silent SNP G G A novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 TTLL4 9654 hgsc.bcm.edu 37 2 219609933 219609934 + Frame_Shift_Ins INS - - T novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 TULP3 7289 hgsc.bcm.edu;ucsc.edu 37 12 3031528 3031528 + Frame_Shift_Del DEL T T - novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 UNC5C 8633 broad.mit.edu;hgsc.bcm.edu 37 4 96127874 96127874 + Missense_Mutation SNP G G T rs139568380 byfrequency;alternate_allele TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 USP17L2 377630 broad.mit.edu 37 8 11995803 11995803 + Missense_Mutation SNP C T T novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 WASF3 10810 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 27246116 27246116 + Missense_Mutation SNP G G T novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 WASH3P 374666 broad.mit.edu 37 15 102515299 102515299 + Missense_Mutation SNP G A A novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 ZNF480 147657 hgsc.bcm.edu 37 19 52803670 52803671 + Frame_Shift_Del DEL TG TG - rs3217319 bycluster;by1000genomes TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 TG TG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841 ZNF714 148206 hgsc.bcm.edu 37 19 21300833 21300835 + In_Frame_Del DEL GAA GAA - novel TCGA-BP-4972-01A-01D-1462-08 TCGA-BP-4972-11A-01D-1462-08 GAA GAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b2da5d39-33f6-4807-9d1d-92b7cef2a8df 81fc4193-ce13-4390-b0ad-1c40656c0841