Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ALG13 79868 hgsc.bcm.edu;ucsc.edu 37 X 110951455 110951455 + Frame_Shift_Del DEL T T - novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 ALPP 250 broad.mit.edu 37 2 233246044 233246044 + Missense_Mutation SNP G T T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 ALPPL2 251 broad.mit.edu 37 2 233274125 233274125 + Missense_Mutation SNP G T T rs145179673 byfrequency;alternate_allele TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 APC2 10297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1461048 1461048 + Missense_Mutation SNP A A G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 APOBEC3F 200316 broad.mit.edu;hgsc.bcm.edu 37 22 39441014 39441014 + Silent SNP T T A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 ATXN1 6310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 16328126 16328126 + Missense_Mutation SNP T T C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 C6orf105 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 11778959 11778959 + Missense_Mutation SNP G G C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 C7orf46 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 23737866 23737866 + Missense_Mutation SNP C C A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 CACNA1G 8913 broad.mit.edu;ucsc.edu 37 17 48703477 48703477 + Missense_Mutation SNP T A A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 CAPN1 823 hgsc.bcm.edu 37 11 64972256 64972260 + Frame_Shift_Del DEL TTATG TTATG - novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 TTATG TTATG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 CASP5 838 hgsc.bcm.edu 37 11 104879687 104879687 + Frame_Shift_Del DEL T T - novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 CD93 22918 broad.mit.edu;hgsc.bcm.edu 37 20 23066499 23066499 + Silent SNP G G A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 CDC23 8697 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137524758 137524758 + Missense_Mutation SNP G G C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 CDKL5 6792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 18622979 18622979 + Missense_Mutation SNP G G C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 CELA3A 10136 broad.mit.edu;ucsc.edu 37 1 22336337 22336337 + Missense_Mutation SNP A G G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 CHRAC1 54108 broad.mit.edu 37 8 141521619 141521619 + Frame_Shift_Del DEL T - - novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 CPAMD8 27151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17010350 17010350 + Missense_Mutation SNP T T G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T T G T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 CTNNA1 1495 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 138269640 138269640 + Missense_Mutation SNP G G A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 CUL4B 8450 broad.mit.edu;ucsc.edu 37 X 119694026 119694026 + Missense_Mutation SNP G T T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 CYP27B1 1594 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 58158259 58158259 + Silent SNP C C T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 CYTH3 9265 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 6226736 6226736 + Missense_Mutation SNP T T G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 DNAH1 25981 broad.mit.edu;ucsc.edu 37 3 52393986 52393986 + Missense_Mutation SNP G C C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 DNAH8 1769 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 38891824 38891824 + Missense_Mutation SNP T T G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T T G T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 DNAH9 1770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 11648206 11648206 + Missense_Mutation SNP G G T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 EIF4A2 1974 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 186504360 186504360 + Missense_Mutation SNP A A C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 FAM46D 169966 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 79698411 79698411 + Missense_Mutation SNP A A T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 FANCG 2189 broad.mit.edu;hgsc.bcm.edu 37 9 35075002 35075002 + Missense_Mutation SNP G G A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 FANCG 2189 broad.mit.edu;hgsc.bcm.edu 37 9 35075004 35075004 + Missense_Mutation SNP C C G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 FMOD 2331 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203316788 203316788 + Missense_Mutation SNP G G A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 FRY 10129 broad.mit.edu;ucsc.edu 37 13 32841377 32841377 + Missense_Mutation SNP C A A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 GBA2 57704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35738346 35738346 + Missense_Mutation SNP C C T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 GOLGA2 2801 broad.mit.edu 37 9 131021536 131021536 + Silent SNP C T T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 GPR15 2838 broad.mit.edu;ucsc.edu 37 3 98251550 98251550 + Missense_Mutation SNP C A A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 GPR172B 0 hgsc.bcm.edu;ucsc.edu 37 17 4937468 4937468 + Missense_Mutation SNP C C T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 HECW1 23072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 43503283 43503283 + Silent SNP T T C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 INHBC 3626 hgsc.bcm.edu 37 12 57843412 57843413 + Frame_Shift_Ins INS - - G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 ITPR2 3709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 26839514 26839514 + Missense_Mutation SNP T T C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 KAT2B 8850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 20153227 20153227 + Missense_Mutation SNP A A G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 KCTD14 65987 broad.mit.edu;ucsc.edu 37 11 77727894 77727894 + Nonsense_Mutation SNP G T T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 KIAA1486 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 226447525 226447525 + Missense_Mutation SNP C C A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 KIAA1486 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 226447526 226447526 + Missense_Mutation SNP C C G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 KIF21A 55605 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 39730918 39730918 + Missense_Mutation SNP T T G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 KIF2B 84643 hgsc.bcm.edu;ucsc.edu 37 17 51902361 51902361 + Frame_Shift_Del DEL A A - novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 KLF3 51274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 38690220 38690220 + Missense_Mutation SNP T T G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 LHFPL3 375612 broad.mit.edu 37 7 103969251 103969251 + Silent SNP C T T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 LIPF 8513 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 90438403 90438403 + Missense_Mutation SNP G G A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 LRRC4 64101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127670011 127670011 + Missense_Mutation SNP T T C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 MAB21L1 4081 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 36049398 36049398 + Missense_Mutation SNP T T A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 MED25 81857 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50322487 50322487 + Missense_Mutation SNP C C G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 MRPS17 51373 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 56022693 56022693 + Missense_Mutation SNP C C T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 MYH7 4625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23891451 23891451 + Silent SNP C C A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 NCL 4691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 232321358 232321358 + Silent SNP T T C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 NHSL2 340527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 71359245 71359245 + Missense_Mutation SNP A A C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 NKAP 79576 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 119077352 119077352 + Missense_Mutation SNP G G T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 OPTC 26254 broad.mit.edu;hgsc.bcm.edu 37 1 203468978 203468978 + Missense_Mutation SNP G G C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 PKDCC 91461 broad.mit.edu 37 2 42275952 42275952 + Missense_Mutation SNP C T T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 PLCL1 5334 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 198949407 198949407 + Missense_Mutation SNP T T G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 PLD1 5337 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 171323102 171323102 + Missense_Mutation SNP G G T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 PLEKHM1 9842 hgsc.bcm.edu;ucsc.edu 37 17 43517526 43517526 + RNA SNP T T C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 PPL 5493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4953994 4953994 + Silent SNP C C A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 PRAME 23532 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 22890580 22890580 + Missense_Mutation SNP A A G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 PRELP 5549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203453269 203453269 + Missense_Mutation SNP C C A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 PRRC2B 84726 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 134351306 134351306 + Missense_Mutation SNP G G C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 PYCARD 29108 hgsc.bcm.edu 37 16 31213523 31213523 + Silent SNP G G T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 QRICH2 84074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74276934 74276934 + Missense_Mutation SNP C C T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 RABGEF1 27342 broad.mit.edu;hgsc.bcm.edu 37 7 66248812 66248812 + Missense_Mutation SNP G G C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 RAD54L 8438 broad.mit.edu;hgsc.bcm.edu 37 1 46743873 46743873 + Silent SNP G G A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 RBM26 64062 broad.mit.edu 37 13 79928637 79928637 + Silent SNP A C C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 RBM39 9584 broad.mit.edu;hgsc.bcm.edu 37 20 34292611 34292611 + Silent SNP A A G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 RECQL5 9400 broad.mit.edu 37 17 73626918 73626919 + Splice_Site INS - TG TG novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 RFX7 64864 hgsc.bcm.edu;ucsc.edu 37 15 56393665 56393665 + Frame_Shift_Del DEL T T - novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 RIMS1 22999 broad.mit.edu 37 6 72960946 72960946 + Nonsense_Mutation SNP T A A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 RIPK4 54101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 43164104 43164104 + Missense_Mutation SNP T T A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 RP1L1 94137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 10465398 10465398 + Missense_Mutation SNP C C G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 RPA3 6119 broad.mit.edu;hgsc.bcm.edu 37 7 7680049 7680049 + Missense_Mutation SNP T T C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 RPL7 6129 broad.mit.edu;hgsc.bcm.edu 37 8 74204500 74204500 + Missense_Mutation SNP T T A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 SH3BGR 6450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 40834425 40834425 + Missense_Mutation SNP A A G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 SPSB3 90864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1827748 1827748 + Missense_Mutation SNP C C G rs147512809 alternate_allele TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 STAT2 6773 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56750313 56750313 + Nonsense_Mutation SNP G G A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 TIA1 7072 broad.mit.edu 37 2 70475612 70475612 + Translation_Start_Site SNP C T T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 TMEM143 55260 broad.mit.edu 37 19 48845836 48845836 + Missense_Mutation SNP G T T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 TMEM208 29100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67262757 67262757 + Silent SNP T T A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 TMEM80 283232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 703112 703112 + Missense_Mutation SNP G G C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 TMUB2 79089 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42266747 42266747 + Silent SNP G G A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 TNR 7143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 175360502 175360502 + Missense_Mutation SNP C C G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 TRAPPC9 83696 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 141310714 141310714 + Splice_Site SNP C C T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 TTN 7273 broad.mit.edu 37 2 179406098 179406098 + Missense_Mutation SNP T A A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179410271 179410271 + Frame_Shift_Del DEL G G - novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 UNK 85451 broad.mit.edu 37 17 73814863 73814863 + Silent SNP C T T novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 UNK 85451 hgsc.bcm.edu;ucsc.edu 37 17 73816152 73816152 + Frame_Shift_Del DEL C C - novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 VHL 7428 hgsc.bcm.edu 37 3 10183871 10183871 + Missense_Mutation SNP G G C novel TCGA-BP-4782-01A-02D-2099-10 TCGA-BP-4782-11A-01W-1476-10 G G G C G G Unknown Valid Somatic Phase_I WXS Illumina Miseq . . PacBio RS ec9b5e3e-36a9-4533-a621-1b4864773544 ecaca359-731a-46a3-99dd-6e34d91ccb13 WDFY2 115825 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 52293353 52293353 + Silent SNP G G C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 ZNF17 7565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57931180 57931180 + Missense_Mutation SNP C C G novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4 LYST 1130 broad.mit.edu 37 1 235907322 235907322 + Missense_Mutation SNP T C C novel TCGA-BP-4782-01A-02D-1421-08 TCGA-BP-4782-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 . . Illumina GAIIx 468ba8c3-0141-4150-aeba-fa0a7e8e007e bae9db07-4abb-48f6-a598-9477dc0795b4