Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAMTS20 80070 hgsc.bcm.edu;ucsc.edu 37 12 43825141 43825141 + Nonsense_Mutation SNP C C T novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 ARSD 414 hgsc.bcm.edu 37 X 2832696 2832696 + Silent SNP T T C rs113031742 bycluster;by1000genomes TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 C14orf101 54916 hgsc.bcm.edu 37 14 57113992 57113992 + Missense_Mutation SNP A A G novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 C2orf77 0 hgsc.bcm.edu;ucsc.edu 37 2 170505754 170505754 + Nonsense_Mutation SNP C C A rs138449065 by1000genomes;alternate_allele TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 CALCR 799 hgsc.bcm.edu;ucsc.edu 37 7 93116284 93116284 + Missense_Mutation SNP T T G novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 CAMSAP1 157922 hgsc.bcm.edu;ucsc.edu 37 9 138703339 138703339 + Missense_Mutation SNP G G A novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 CBLL1 79872 hgsc.bcm.edu 37 7 107395874 107395874 + Silent SNP G G A novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 CCDC144A 9720 hgsc.bcm.edu 37 17 16638643 16638644 + Frame_Shift_Ins INS - - T novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 - - . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 CRYBB3 1417 hgsc.bcm.edu;ucsc.edu 37 22 25597418 25597418 + Missense_Mutation SNP G G C novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 E2F5 1875 hgsc.bcm.edu;ucsc.edu 37 8 86118418 86118418 + Silent SNP C C A novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 EGR2 1959 hgsc.bcm.edu 37 10 64573811 64573811 + Missense_Mutation SNP G G C novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 ERCC4 2072 hgsc.bcm.edu;ucsc.edu 37 16 14041533 14041533 + Nonsense_Mutation SNP G G T novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 F5 2153 hgsc.bcm.edu 37 1 169510701 169510701 + Missense_Mutation SNP G G T novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 FAM194B 220081 hgsc.bcm.edu 37 13 46170733 46170734 + Frame_Shift_Ins INS - - T novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 - - . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 FAM200B 285550 hgsc.bcm.edu;ucsc.edu 37 4 15688806 15688806 + Missense_Mutation SNP A A C novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 FAM71D 161142 hgsc.bcm.edu 37 14 67671485 67671485 + Silent SNP A A T rs55981040 bycluster;byfrequency TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 FGF8 2253 hgsc.bcm.edu 37 10 103534502 103534502 + Silent SNP G G A novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 FUCA2 2519 hgsc.bcm.edu;ucsc.edu 37 6 143825091 143825091 + Nonsense_Mutation SNP G G C novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 GRIN2B 2904 hgsc.bcm.edu 37 12 13906649 13906649 + Silent SNP T T A novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 IL17RC 84818 hgsc.bcm.edu 37 3 9960273 9960273 + Missense_Mutation SNP G G C rs112627391 bycluster;byfrequency;by1000genomes TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 KCNH8 131096 hgsc.bcm.edu;ucsc.edu 37 3 19492864 19492864 + Missense_Mutation SNP T T A novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 KRTAP10-3 386682 hgsc.bcm.edu 37 21 45978591 45978591 + Missense_Mutation SNP G G A rs79221051 bycluster;by1000genomes TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 LRP1B 53353 hgsc.bcm.edu 37 2 141259355 141259355 + Silent SNP G G A rs148504930 TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 MED14 9282 hgsc.bcm.edu 37 X 40526075 40526075 + Missense_Mutation SNP A A C novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 NAA25 80018 hgsc.bcm.edu;ucsc.edu 37 12 112498998 112498998 + Silent SNP A A G novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 NEK5 341676 hgsc.bcm.edu;ucsc.edu 37 13 52649897 52649897 + Silent SNP T T C novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 NOTCH3 4854 hgsc.bcm.edu;ucsc.edu 37 19 15278141 15278141 + Missense_Mutation SNP G G A novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 PCYT2 5833 hgsc.bcm.edu 37 17 79866843 79866843 + Silent SNP G G T novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 PDS5A 23244 hgsc.bcm.edu;ucsc.edu 37 4 39905679 39905679 + Nonsense_Mutation SNP G G A novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 PLEKHG4B 153478 hgsc.bcm.edu 37 5 145006 145006 + Missense_Mutation SNP G G C novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 PLEKHG6 55200 hgsc.bcm.edu 37 12 6436888 6436888 + Silent SNP G G A novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 PSMD13 5719 hgsc.bcm.edu 37 11 244167 244167 + Silent SNP C C T rs1128320 bycluster;byfrequency;by1000genomes TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 PYROXD2 84795 hgsc.bcm.edu 37 10 100152266 100152266 + Missense_Mutation SNP C C T novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 RNF216 54476 hgsc.bcm.edu;ucsc.edu 37 7 5781389 5781389 + Missense_Mutation SNP C C T novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 SAGE1 55511 hgsc.bcm.edu;ucsc.edu 37 X 134991924 134991924 + Missense_Mutation SNP G G T novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 SCAND3 114821 hgsc.bcm.edu 37 6 28543264 28543264 + Silent SNP C C T rs17336532 bycluster;byfrequency TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 SDHA 6389 hgsc.bcm.edu 37 5 236653 236653 + Silent SNP C C A rs75091805 bycluster;byfrequency TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 SLC36A3 285641 hgsc.bcm.edu;ucsc.edu 37 5 150666901 150666901 + Missense_Mutation SNP A A G novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 SLC4A10 57282 hgsc.bcm.edu;ucsc.edu 37 2 162821636 162821636 + Missense_Mutation SNP T T G novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 SLITRK4 139065 hgsc.bcm.edu 37 X 142718802 142718802 + Silent SNP G G C novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 SPDYE4 388333 hgsc.bcm.edu 37 17 8660584 8660584 + Silent SNP G G C novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 STXBP2 6813 hgsc.bcm.edu 37 19 7707347 7707347 + Missense_Mutation SNP A A C novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 TET2 54790 hgsc.bcm.edu 37 4 106155681 106155681 + Missense_Mutation SNP C C A novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C C A C C Unknown Valid Somatic Phase_I WXS 454 SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 TM7SF4 0 hgsc.bcm.edu 37 8 105361354 105361354 + Missense_Mutation SNP G G C rs67114147 bycluster;byfrequency;by1000genomes TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 TUFT1 7286 hgsc.bcm.edu;ucsc.edu 37 1 151512886 151512886 + Missense_Mutation SNP C C T novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 WAC 51322 hgsc.bcm.edu;ucsc.edu 37 10 28897283 28897283 + Missense_Mutation SNP T T G novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 XPA 7507 hgsc.bcm.edu;ucsc.edu 37 9 100437766 100437766 + Silent SNP C C T novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 ZFAT 57623 hgsc.bcm.edu;ucsc.edu 37 8 135613761 135613761 + Missense_Mutation SNP C C T novel TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4 ZNF717 100131827 hgsc.bcm.edu 37 3 75786620 75786620 + Silent SNP G G A rs144106206 TCGA-BP-4781-01A-01D-1373-10 TCGA-BP-4781-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 9c2726a8-ef24-4653-80c3-247a9c2a0608 ecd9132b-830c-48a8-ba7f-1da213c154b4