Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACSF2 80221 hgsc.bcm.edu;ucsc.edu 37 17 48548424 48548424 + Silent SNP A A G novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 AFF2 2334 hgsc.bcm.edu;ucsc.edu 37 X 148037494 148037494 + Missense_Mutation SNP C C A novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 APBB3 10307 hgsc.bcm.edu 37 5 139941190 139941190 + Silent SNP T T C novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 ARID4A 5926 hgsc.bcm.edu;ucsc.edu 37 14 58790270 58790270 + Nonsense_Mutation SNP G G T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 BAP1 8314 hgsc.bcm.edu;ucsc.edu 37 3 52442567 52442567 + Nonsense_Mutation SNP G G A novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 C10orf129 142827 hgsc.bcm.edu;ucsc.edu 37 10 96971678 96971678 + Missense_Mutation SNP G G A novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 C10orf99 387695 hgsc.bcm.edu 37 10 85944492 85944492 + Missense_Mutation SNP G G T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 CCDC148 130940 hgsc.bcm.edu;ucsc.edu 37 2 159033038 159033038 + Nonsense_Mutation SNP G G A novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 CHRFAM7A 89832 hgsc.bcm.edu 37 15 30665281 30665282 + Frame_Shift_Del DEL CA CA - rs67158670 bycluster;byfrequency TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 CA CA . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 CLSPN 63967 hgsc.bcm.edu;ucsc.edu 37 1 36205125 36205125 + Nonsense_Mutation SNP A A T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A A T A A Unknown Valid Somatic Phase_I WXS 454 SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 CNOT1 23019 hgsc.bcm.edu;ucsc.edu 37 16 58579383 58579385 + In_Frame_Del DEL GTA GTA - novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 GTA GTA . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 COL6A1 1291 hgsc.bcm.edu;ucsc.edu 37 21 47420243 47420243 + Splice_Site SNP A A C novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 COL6A6 131873 hgsc.bcm.edu;ucsc.edu 37 3 130300711 130300711 + Missense_Mutation SNP G G T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 CXXC4 80319 hgsc.bcm.edu;ucsc.edu 37 4 105393489 105393489 + Nonsense_Mutation SNP C C T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 DST 667 hgsc.bcm.edu;ucsc.edu 37 6 56341042 56341042 + Missense_Mutation SNP A A G novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A A G A A Unknown Valid Somatic Phase_I WXS 454 SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 FAM38A 0 hgsc.bcm.edu 37 16 88787608 88787610 + In_Frame_Del DEL CTT CTT - rs150376294 bycluster;by1000genomes TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 CTT CTT . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 FAM46D 169966 hgsc.bcm.edu;ucsc.edu 37 X 79698230 79698230 + Silent SNP T T C novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 GRIK2 2898 hgsc.bcm.edu;ucsc.edu 37 6 102266315 102266315 + Missense_Mutation SNP C C A novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 HSPA2 3306 hgsc.bcm.edu 37 14 65008972 65008972 + Missense_Mutation SNP C C G novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 KCTD17 79734 hgsc.bcm.edu 37 22 37455447 37455447 + Missense_Mutation SNP G G T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 KHDRBS2 202559 hgsc.bcm.edu 37 6 62604617 62604617 + Missense_Mutation SNP G G T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 KIAA0368 23392 hgsc.bcm.edu;ucsc.edu 37 9 114182377 114182377 + Silent SNP C C G novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 KLHL22 84861 hgsc.bcm.edu 37 22 20843449 20843449 + Missense_Mutation SNP G G T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 MFAP3L 9848 hgsc.bcm.edu;ucsc.edu 37 4 170926995 170926995 + Missense_Mutation SNP A A T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 MYH15 22989 hgsc.bcm.edu;ucsc.edu 37 3 108211422 108211422 + Missense_Mutation SNP C C T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 NBAS 51594 hgsc.bcm.edu;ucsc.edu 37 2 15326915 15326915 + Nonsense_Mutation SNP A A T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52702660 52702660 + Missense_Mutation SNP T T A novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 T T T A T T Unknown Valid Somatic Phase_I WXS 454 SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 PPP2R3A 5523 hgsc.bcm.edu;ucsc.edu 37 3 135745814 135745814 + Silent SNP C C T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 PRKD3 23683 hgsc.bcm.edu;ucsc.edu 37 2 37520414 37520414 + Missense_Mutation SNP A A T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 PTCH1 5727 hgsc.bcm.edu 37 9 98231217 98231217 + Missense_Mutation SNP G G T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 RGS18 64407 hgsc.bcm.edu 37 1 192150459 192150459 + Silent SNP A A G novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 SCN3A 6328 hgsc.bcm.edu;ucsc.edu 37 2 165953810 165953810 + Missense_Mutation SNP T T A novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 T T T A T T Unknown Valid Somatic Phase_I WXS 454 SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 SERPINA11 256394 hgsc.bcm.edu;ucsc.edu 37 14 94914808 94914808 + Missense_Mutation SNP C C A novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 SPOCK3 50859 hgsc.bcm.edu;ucsc.edu 37 4 167656201 167656201 + Missense_Mutation SNP A A T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A A T A A Unknown Valid Somatic Phase_I WXS 454 SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 STMN3 50861 hgsc.bcm.edu;ucsc.edu 37 20 62275589 62275589 + Silent SNP G G A novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 TAS1R2 80834 hgsc.bcm.edu 37 1 19181061 19181061 + Silent SNP G G A novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 TMEM109 79073 hgsc.bcm.edu 37 11 60689310 60689310 + Silent SNP A A T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 TTI1 9675 hgsc.bcm.edu;ucsc.edu 37 20 36631058 36631058 + Nonsense_Mutation SNP G G T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 WFIKKN2 124857 hgsc.bcm.edu;ucsc.edu 37 17 48917427 48917427 + Missense_Mutation SNP G G T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 ZC3H15 55854 hgsc.bcm.edu;ucsc.edu 37 2 187370523 187370523 + Missense_Mutation SNP G G T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 ZDHHC5 25921 hgsc.bcm.edu;ucsc.edu 37 11 57440565 57440565 + Missense_Mutation SNP G G T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6 ZNF836 162962 hgsc.bcm.edu;ucsc.edu 37 19 52659379 52659379 + Silent SNP A A T novel TCGA-BP-4337-01A-01D-1366-10 TCGA-BP-4337-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ac8f948d-0bb3-4150-9a77-0ec972993a93 06efe36c-7a15-4074-abfe-c915db67fce6