Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABO 28 hgsc.bcm.edu 37 9 136131057 136131057 + Frame_Shift_Del DEL G G - rs150311214 by1000genomes TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d ADAMTS12 81792 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 33576384 33576384 + Silent SNP G G A novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d APLF 200558 hgsc.bcm.edu 37 2 68805143 68805143 + Frame_Shift_Del DEL A A - rs149897324 by1000genomes TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d BIN2 51411 broad.mit.edu;hgsc.bcm.edu 37 12 51685607 51685607 + Missense_Mutation SNP G G T novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d C4orf41 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 184601356 184601356 + Missense_Mutation SNP A A T novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d CCDC75 253635 broad.mit.edu;ucsc.edu 37 2 37315582 37315582 + Nonsense_Mutation SNP C T T novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d CHRNB4 1143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 78921969 78921969 + Missense_Mutation SNP G G T novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d CHRNB4 1143 hgsc.bcm.edu;ucsc.edu 37 15 78917593 78917593 + Missense_Mutation SNP C C T novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d COL18A1 80781 hgsc.bcm.edu 37 21 46925141 46925149 + In_Frame_Del DEL GGCCCCCCA GGCCCCCCA - novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 GGCCCCCCA GGCCCCCCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d COPB2 9276 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 139077639 139077639 + Missense_Mutation SNP T T G novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d CROCCL1 0 broad.mit.edu 37 1 16946438 16946438 + RNA SNP G A A rs28392876 bycluster;byfrequency TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d DIP2C 22982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 329235 329235 + Missense_Mutation SNP G G T novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d DLD 1738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 107542792 107542792 + Missense_Mutation SNP A A G novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d DUSP15 128853 broad.mit.edu 37 20 30438442 30438442 + Missense_Mutation SNP T C C novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d DZIP1L 199221 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 137813726 137813726 + Missense_Mutation SNP G G A rs148594666 bycluster;byfrequency;by1000genomes TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d HIPK3 10114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 33308096 33308096 + Missense_Mutation SNP A A C novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d HSP90AA1 3320 broad.mit.edu;hgsc.bcm.edu 37 14 102548486 102548486 + Missense_Mutation SNP T T C novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d HSPA1L 3305 broad.mit.edu;hgsc.bcm.edu 37 6 31779631 31779631 + Missense_Mutation SNP G G A novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d INPP5F 22876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 121567483 121567483 + Missense_Mutation SNP C C T novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d KIAA2022 340533 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 73960856 73960856 + Missense_Mutation SNP C C A novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d LCLAT1 253558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 30756119 30756119 + Nonsense_Mutation SNP T T A novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d MAF 4094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 79632954 79632954 + Missense_Mutation SNP G G T novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d MBP 4155 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 74778271 74778271 + Missense_Mutation SNP T T A novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d NEK9 91754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75583974 75583974 + Missense_Mutation SNP T T C novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d NSD1 64324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176562399 176562399 + Missense_Mutation SNP G G A novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d PABPC1 26986 hgsc.bcm.edu 37 8 101730036 101730037 + Frame_Shift_Ins INS - - C novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d PGAP2 27315 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 3846652 3846652 + Silent SNP G G A rs151115501 byfrequency;alternate_allele TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d PLXNA1 5361 broad.mit.edu 37 3 126707544 126707544 + Silent SNP T G G novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d POU3F4 5456 hgsc.bcm.edu 37 X 82764039 82764039 + Frame_Shift_Del DEL A A - novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d PTGIS 5740 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 48130813 48130813 + Silent SNP C C T rs140787750 by1000genomes TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d RFTN1 23180 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 16475443 16475443 + Missense_Mutation SNP G G A novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d RHBDF1 64285 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 109479 109479 + Missense_Mutation SNP A A G novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d RPL23AP53 644128 broad.mit.edu 37 8 163401 163401 + RNA SNP G C C novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d SIK2 23235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111591208 111591208 + Missense_Mutation SNP T T A novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d SKA3 221150 hgsc.bcm.edu 37 13 21746601 21746601 + Frame_Shift_Del DEL G G - rs151272242 by1000genomes TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d ST7 7982 broad.mit.edu 37 7 116869938 116869938 + Missense_Mutation SNP A C C novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d TBC1D8B 54885 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 106117008 106117008 + Missense_Mutation SNP G G T novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179614716 179614716 + Silent SNP A A G novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d Unknown 0 broad.mit.edu 37 15 62534991 62534991 + RNA DEL A - - novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d Unknown 0 broad.mit.edu 37 16 16465314 16465314 + Missense_Mutation SNP A G G novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d WHAMML1 0 broad.mit.edu 37 15 23205098 23205098 + RNA SNP G A A rs146035894 by1000genomes TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d WHAMML1 0 broad.mit.edu 37 15 23205108 23205108 + RNA SNP C T T novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d XPC 7508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 14214467 14214467 + Missense_Mutation SNP C C A novel TCGA-B8-5552-01B-11D-1669-08 TCGA-B8-5552-10A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 13b52e49-20df-4e39-9dc9-cf8f7c157bd7 ee08ef8a-2a71-4a48-b8f3-b363a19db60d