Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACSBG2 81616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6183057 6183057 + Missense_Mutation SNP A A C novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 ADAM29 11086 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 175898846 175898846 + Nonsense_Mutation SNP C C T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 ALG3 10195 broad.mit.edu 37 3 183961713 183961713 + Silent SNP G T T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 ARX 170302 broad.mit.edu 37 X 25022841 25022841 + Missense_Mutation SNP C A A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 BMPER 168667 hgsc.bcm.edu 37 7 34118719 34118730 + In_Frame_Del DEL GCGCATCGCGCT GCGCATCGCGCT - novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 GCGCATCGCGCT GCGCATCGCGCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba C17orf80 55028 hgsc.bcm.edu 37 17 71241322 71241325 + Frame_Shift_Del DEL GTAA GTAA - novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 GTAA GTAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba C3orf45 132228 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 50324620 50324620 + Missense_Mutation SNP A A T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 CDC42 998 broad.mit.edu;hgsc.bcm.edu 37 1 22417987 22417987 + Missense_Mutation SNP A A T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 CDH18 1016 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 19520813 19520813 + Missense_Mutation SNP C C A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 CLDN3 1365 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 73183930 73183930 + Silent SNP C C G novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba CNST 163882 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 246810555 246810555 + Frame_Shift_Del DEL T T - novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 CUL1 8454 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 148485659 148485659 + Missense_Mutation SNP G G A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 CYP4Z2P 163720 broad.mit.edu 37 1 47325354 47325354 + RNA SNP G A A rs4660360 bycluster;byhapmap;by1000genomes TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 DCAF12L1 139170 broad.mit.edu;hgsc.bcm.edu 37 X 125685459 125685459 + Missense_Mutation SNP C C T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 DMD 1756 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 31196785 31196785 + Silent SNP C C A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 DNAH7 56171 broad.mit.edu;hgsc.bcm.edu 37 2 196723250 196723250 + Missense_Mutation SNP G G T novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba DNHD1 144132 broad.mit.edu;hgsc.bcm.edu 37 11 6585252 6585252 + Silent SNP C C T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 DNM2 1785 broad.mit.edu 37 19 10935788 10935788 + Missense_Mutation SNP A G G novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 ELMO3 79767 broad.mit.edu;hgsc.bcm.edu 37 16 67235520 67235520 + Missense_Mutation SNP G G A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 ESPNP 284729 broad.mit.edu 37 1 17034125 17034126 + Frame_Shift_Ins INS - AGCT AGCT novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba FAM131C 348487 broad.mit.edu 37 1 16361875 16361875 + Missense_Mutation SNP A G G rs79266383 TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 FNIP1 96459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 131008580 131008580 + Missense_Mutation SNP T T G novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 FUK 197258 broad.mit.edu 37 16 70508127 70508128 + In_Frame_Ins INS - CCA CCA novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 GLTSCR2 29997 broad.mit.edu 37 19 48258011 48258011 + Missense_Mutation SNP G A A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 GLYCTK 132158 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52324497 52324497 + Missense_Mutation SNP G G A novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba GOLGA6L10 647042 broad.mit.edu 37 15 82635117 82635117 + RNA SNP T C C novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba HEATR6 63897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 58137396 58137396 + Missense_Mutation SNP G G C novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 HGC6.3 100128124 broad.mit.edu 37 6 168377094 168377094 + Missense_Mutation SNP G A A rs9364375 bycluster;by2hit2allele TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 HIST1H3I 8354 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 27839911 27839911 + Silent SNP C C T novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba HKR1 284459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 37854193 37854193 + Missense_Mutation SNP G G A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 HMGXB3 22993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149403938 149403938 + Silent SNP T T C novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 HOXA10 3206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 27211532 27211533 + Frame_Shift_Del DEL AG AG - novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 KDM4A 9682 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44128741 44128741 + Silent SNP T T C novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 KIAA0556 23247 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 27689189 27689189 + Missense_Mutation SNP G G T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 KIAA0802 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 8825236 8825236 + Missense_Mutation SNP C C T novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba KIAA0895L 653319 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67214015 67214015 + Missense_Mutation SNP C C T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 KIF19 124602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72345372 72345372 + Missense_Mutation SNP G G T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 KIF1A 547 broad.mit.edu 37 2 241660401 241660401 + Missense_Mutation SNP C A A novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba KLK14 43847 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51585845 51585845 + Missense_Mutation SNP T T G novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 KRTAP9-2 83899 hgsc.bcm.edu 37 17 39383323 39383334 + In_Frame_Del DEL CTGCTGCCAGCC CTGCTGCCAGCC - novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 CTGCTGCCAGCC CTGCTGCCAGCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 LASS2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150939585 150939585 + Missense_Mutation SNP T T C novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba LOC400759 0 broad.mit.edu 37 1 89890132 89890132 + RNA SNP G A A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 MAD2L1 4085 broad.mit.edu;hgsc.bcm.edu 37 4 120981284 120981284 + Missense_Mutation SNP C C T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 MGST3 4259 hgsc.bcm.edu 37 1 165624711 165624712 + Frame_Shift_Ins INS - - T novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba MICALCL 84953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 12376331 12376331 + Missense_Mutation SNP G G T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 MYH8 4626 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10299727 10299727 + Nonsense_Mutation SNP G G A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 MYT1L 23040 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 1926721 1926721 + Missense_Mutation SNP C C T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 NEURL3 93082 broad.mit.edu 37 2 97166139 97166139 + Frame_Shift_Del DEL C - - novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 NHS 4810 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 17746842 17746842 + Silent SNP C C T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 NOSIP 51070 broad.mit.edu;hgsc.bcm.edu 37 19 50060397 50060397 + Missense_Mutation SNP C C G novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba NOXO1 124056 hgsc.bcm.edu 37 16 2031172 2031173 + Frame_Shift_Ins INS - - C novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba NPM3 10360 hgsc.bcm.edu;ucsc.edu 37 10 103542318 103542319 + Frame_Shift_Ins INS - - A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 NSD1 64324 broad.mit.edu;hgsc.bcm.edu 37 5 176665505 176665505 + Missense_Mutation SNP C C G novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 OR56A4 120793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6024124 6024124 + Silent SNP G G A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 OR5H1 26341 hgsc.bcm.edu;ucsc.edu 37 3 97852455 97852456 + Frame_Shift_Ins INS - - A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 PABPC1P2 728773 broad.mit.edu 37 2 147346046 147346046 + Missense_Mutation SNP C A A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52620529 52620550 + Frame_Shift_Del DEL ACAGAGGCCACGCGAACCACAG ACAGAGGCCACGCGAACCACAG - novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 ACAGAGGCCACGCGAACCACAG ACAGAGGCCACGCGAACCACAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 PCDHB6 56130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140532190 140532190 + Silent SNP C C A rs146937630 alternate_allele TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 PCDHGA8 9708 broad.mit.edu 37 5 140774176 140774176 + Missense_Mutation SNP G T T novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba PF4 5196 broad.mit.edu 37 4 74847209 74847209 + Missense_Mutation SNP G A A novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba PIGO 84720 broad.mit.edu 37 9 35095479 35095479 + Silent SNP G A A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 POM121L9P 29774 broad.mit.edu 37 22 24659591 24659591 + RNA SNP A G G novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba POM121L9P 29774 broad.mit.edu 37 22 24659593 24659593 + RNA SNP C T T novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba PTPN13 5783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 87696460 87696460 + Missense_Mutation SNP C C T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 PTPN18 26469 broad.mit.edu 37 2 131129929 131129934 + In_Frame_Del DEL GACGGG - - rs112040677 bycluster;by1000genomes TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 GACGGG GACGGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba PTPN21 11099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 88983531 88983531 + Silent SNP C C T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 PYCR1 5831 broad.mit.edu 37 17 79894640 79894640 + Missense_Mutation SNP C G G novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba RAB11FIP2 22841 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 119805451 119805451 + Missense_Mutation SNP C C T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 REM1 28954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 30064350 30064350 + Missense_Mutation SNP C C G novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 RFPL2 10739 broad.mit.edu;hgsc.bcm.edu 37 22 32587083 32587083 + Silent SNP G G C novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 RNPC3 55599 hgsc.bcm.edu 37 1 104076467 104076467 + Frame_Shift_Del DEL A A - novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 RUFY3 22902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 71648807 71648807 + Splice_Site SNP G G T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 RYR2 6262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 237895427 237895427 + Silent SNP C C A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 SBNO2 22904 broad.mit.edu;hgsc.bcm.edu 37 19 1112193 1112193 + Missense_Mutation SNP T T C novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba SEMA3F 6405 broad.mit.edu 37 3 50225421 50225421 + Missense_Mutation SNP A T T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 SHISA9 729993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 13329151 13329151 + Missense_Mutation SNP G G A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 SLC16A9 220963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 61414026 61414026 + Missense_Mutation SNP A A T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 SLC35A2 7355 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 48762340 48762340 + Silent SNP C C T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 SLC4A7 9497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 27451006 27451006 + Silent SNP C C T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 SLK 9748 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 105752775 105752775 + Frame_Shift_Del DEL A A - novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 SMYD4 114826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 1703754 1703754 + Frame_Shift_Del DEL A A - novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 SPAG1 6674 hgsc.bcm.edu 37 8 101206459 101206460 + In_Frame_Ins INS - - GAC rs56246127 TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba STAB2 55576 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104107496 104107496 + Missense_Mutation SNP G G A rs141685549 by1000genomes TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 SYNE2 23224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64683102 64683102 + Silent SNP C C G novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 SYNJ2BP 55333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 70839819 70839819 + Missense_Mutation SNP A A T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 TGFBI 7045 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 135379760 135379760 + Missense_Mutation SNP G G A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 THSD1P1 374500 broad.mit.edu 37 13 52857470 52857470 + RNA SNP A G G novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 TMEM184C 55751 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 148545115 148545115 + Missense_Mutation SNP G G C novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 TMEM69 51249 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46156752 46156752 + Silent SNP C C T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 Unknown 0 broad.mit.edu 37 5 23980775 23980775 + RNA SNP G A A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 VSIG4 11326 broad.mit.edu;ucsc.edu 37 X 65252420 65252420 + Missense_Mutation SNP G A A rs139911916 alternate_allele TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 VWA5B1 127731 broad.mit.edu;ucsc.edu 37 1 20657460 20657460 + Missense_Mutation SNP A G G novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 WBSCR28 135886 broad.mit.edu 37 7 73280191 73280191 + Silent SNP T C C novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 WDR62 284403 hgsc.bcm.edu;ucsc.edu 37 19 36593730 36593730 + Frame_Shift_Del DEL C C - novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 WDR62 284403 hgsc.bcm.edu;ucsc.edu 37 19 36593732 36593733 + Frame_Shift_Del DEL CA CA - novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 CA CA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 ZNF227 7770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44740521 44740521 + Silent SNP T T C novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 ZNF238 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 244218338 244218338 + Missense_Mutation SNP G G T novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba ZNF564 163050 hgsc.bcm.edu 37 19 12637738 12637739 + Frame_Shift_Ins INS - - AA novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 ZNF595 152687 hgsc.bcm.edu 37 4 85995 85996 + Frame_Shift_Ins INS - - A novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 ZUFSP 221302 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 116977892 116977892 + Missense_Mutation SNP C C T novel TCGA-B2-4099-01A-02D-1251-10 TCGA-B2-4099-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ce82bf89-dc70-44a3-b708-8baf21fbcc47 ef7262e7-c3e5-4d51-b410-aafd62940610 LRRC7 57554 broad.mit.edu 37 1 70502282 70502282 + Missense_Mutation SNP G C C novel TCGA-B2-4099-01A-02D-1458-08 TCGA-B2-4099-10A-01D-1458-08 G G G C G G Unknown Valid Somatic Phase_I WXS 454 . . Illumina GAIIx 01c54f7c-84b9-4f5b-ae44-2ac1f661fd29 54cf60f2-947e-4eb0-b5a7-1e644ca10dba