Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACD 65057 broad.mit.edu;ucsc.edu 37 16 67694268 67694269 + Frame_Shift_Ins INS - G G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ACN9 57001 hgsc.bcm.edu;ucsc.edu 37 7 96747041 96747046 + In_Frame_Del DEL GGGGCG GGGGCG - novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 GGGGCG GGGGCG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ADCY5 111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 123044195 123044195 + Missense_Mutation SNP G G T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ANGPTL6 83854 broad.mit.edu;hgsc.bcm.edu 37 19 10206762 10206762 + Missense_Mutation SNP G G C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ARID1A 8289 hgsc.bcm.edu;ucsc.edu 37 1 27105569 27105570 + Frame_Shift_Del DEL TC TC - novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 TC TC TC - TC TC Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ATG13 9776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 46666953 46666953 + Missense_Mutation SNP C C A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ATP11C 286410 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 138827926 138827926 + Silent SNP C C T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ATP8B1 5205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 55399034 55399034 + Silent SNP A A G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ATRX 546 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 76939124 76939124 + Missense_Mutation SNP C C G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 BCL11B 64919 broad.mit.edu;hgsc.bcm.edu 37 14 99641322 99641322 + Silent SNP C C T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 BCL6 604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 187447399 187447399 + Missense_Mutation SNP A A T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 C10orf79 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 105922142 105922142 + Missense_Mutation SNP A A C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 C14orf43 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 74205375 74205375 + Missense_Mutation SNP A A T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 C17orf46 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 43332848 43332848 + Missense_Mutation SNP G G T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 C21orf99 0 broad.mit.edu 37 21 14424153 14424153 + RNA SNP C A A rs10439727 bycluster;byfrequency;by1000genomes TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 CACNA2D4 93589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 2027490 2027490 + Frame_Shift_Del DEL G G - novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 CCDC109A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 74619047 74619047 + Missense_Mutation SNP T T G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 CCDC45 0 broad.mit.edu;hgsc.bcm.edu 37 17 62512942 62512942 + Missense_Mutation SNP G G C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 CDHR5 53841 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 621602 621602 + Missense_Mutation SNP T T C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 CELSR2 1952 hgsc.bcm.edu 37 1 109792735 109792736 + In_Frame_Ins INS - - CGC novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 CHST12 55501 hgsc.bcm.edu;ucsc.edu 37 7 2473500 2473500 + Frame_Shift_Del DEL A A - novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 COPS5 10987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 67970384 67970384 + Silent SNP A A G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 CORO7 79585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4408461 4408461 + Silent SNP C C T rs151072609 alternate_allele TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 CRIP3 401262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43276136 43276136 + Missense_Mutation SNP T T C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 CUL7 9820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43017376 43017376 + Missense_Mutation SNP C C T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 DNAH17 8632 broad.mit.edu;hgsc.bcm.edu 37 17 76535832 76535832 + Missense_Mutation SNP T T C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 EFTUD2 9343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42953390 42953390 + Missense_Mutation SNP C C A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 EGFR 1956 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 55249116 55249116 + Missense_Mutation SNP A A G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 EP300 2033 broad.mit.edu;hgsc.bcm.edu 37 22 41513594 41513594 + Missense_Mutation SNP C C A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ESPL1 9700 broad.mit.edu 37 12 53670456 53670456 + Silent SNP C T T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ESPL1 9700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53685569 53685569 + Silent SNP C C T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 FAM83B 222584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 54735119 54735119 + Missense_Mutation SNP G G C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 FAT1 2195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 187549319 187549319 + Missense_Mutation SNP G G C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 FGD6 55785 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 95546724 95546724 + Nonsense_Mutation SNP C C A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 FGF3 2248 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 69631129 69631129 + Missense_Mutation SNP G G A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 FMOD 2331 broad.mit.edu;ucsc.edu 37 1 203316461 203316461 + Missense_Mutation SNP G T T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 GON4L 54856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155747557 155747557 + Missense_Mutation SNP C C A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 GPC5 2262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 92346002 92346002 + Missense_Mutation SNP T T C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 GPKOW 27238 broad.mit.edu;ucsc.edu 37 X 48979947 48979947 + Silent SNP A T T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 GPR62 118442 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 51990645 51990645 + Missense_Mutation SNP T T A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 HCN4 10021 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 73616205 73616205 + Missense_Mutation SNP C C A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 HGD 3081 broad.mit.edu;hgsc.bcm.edu 37 3 120369637 120369637 + Missense_Mutation SNP T T C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 HNRNPH1 3187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179050064 179050064 + Missense_Mutation SNP G G A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 HSP90B1 7184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104341195 104341195 + Missense_Mutation SNP A A C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 IRF9 10379 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24633841 24633841 + Missense_Mutation SNP C C G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ITGAL 3683 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30505581 30505581 + Missense_Mutation SNP C C T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 KBTBD8 84541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 67058722 67058722 + Missense_Mutation SNP G G C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 KLK6 5653 broad.mit.edu 37 19 51462529 51462529 + Missense_Mutation SNP C T T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 KNG1 3827 hgsc.bcm.edu;ucsc.edu 37 3 186460113 186460114 + Frame_Shift_Del DEL TT TT - novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 TT TT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 LOC100133050 100133050 broad.mit.edu 37 5 99715528 99715528 + RNA SNP C T T rs71636707 TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 LOC442421 0 broad.mit.edu 37 9 66500841 66500841 + RNA SNP C T T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 LPPR4 9890 broad.mit.edu;ucsc.edu 37 1 99767414 99767414 + Silent SNP T C C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 LRP12 29967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 105503616 105503616 + Missense_Mutation SNP G G A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 LRRCC1 85444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 86022019 86022019 + Missense_Mutation SNP G G T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 MAGEB10 139422 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 27840420 27840420 + Missense_Mutation SNP G G A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 MAPK10 5602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 87023072 87023072 + Missense_Mutation SNP A A G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 MARCKS 4082 broad.mit.edu;hgsc.bcm.edu 37 6 114178975 114178975 + Missense_Mutation SNP G G C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 MLYCD 23417 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 83949048 83949048 + Missense_Mutation SNP A A G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 MSH4 4438 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 76262748 76262748 + Silent SNP T T C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 NOL6 65083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 33470170 33470170 + Missense_Mutation SNP A A G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 NRBP1 29959 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27656879 27656879 + Silent SNP T T C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 NSMAF 8439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 59506790 59506790 + Splice_Site SNP C C G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ORAI1 84876 hgsc.bcm.edu 37 12 122064774 122064779 + In_Frame_Del DEL CCGCCA CCGCCA - rs141919534 bycluster;by1000genomes TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 CCGCCA CCGCCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 OTUB2 78990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 94511094 94511094 + Missense_Mutation SNP G G A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 OXA1L 5018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23239464 23239464 + Missense_Mutation SNP C C G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 PAQR8 85315 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 52268836 52268836 + Nonsense_Mutation SNP T T A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 PBRM1 55193 broad.mit.edu;ucsc.edu 37 3 52678783 52678784 + Frame_Shift_Ins INS - T T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 PLD1 5337 broad.mit.edu;hgsc.bcm.edu 37 3 171377081 171377081 + Missense_Mutation SNP A A T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 PNPLA6 10908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 7614966 7614966 + Silent SNP C C T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 PPFIA4 8497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203024644 203024644 + Frame_Shift_Del DEL A A - novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 PRNP 5621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 4680528 4680528 + Missense_Mutation SNP A A G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 PTPN18 26469 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 131116984 131116984 + Silent SNP C C T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 PXDNL 137902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 52370154 52370154 + Missense_Mutation SNP T T C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 RAB11FIP3 9727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 476674 476674 + Missense_Mutation SNP G G T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 RAB24 53917 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176728925 176728925 + Splice_Site SNP C C T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 RAD51AP2 729475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 17699551 17699551 + Silent SNP G G T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 RANBP17 64901 broad.mit.edu;hgsc.bcm.edu 37 5 170336745 170336745 + Silent SNP G G T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 RER1 11079 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 2333758 2333758 + Missense_Mutation SNP A A G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 REXO2 25996 broad.mit.edu;hgsc.bcm.edu 37 11 114314631 114314631 + Silent SNP T T C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 RNF145 153830 hgsc.bcm.edu;ucsc.edu 37 5 158601127 158601128 + Frame_Shift_Ins INS - - GGACATT novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 RPH3AL 9501 hgsc.bcm.edu;ucsc.edu 37 17 171101 171102 + Frame_Shift_Ins INS - - CT novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 RYR3 6263 broad.mit.edu 37 15 33962623 33962623 + Missense_Mutation SNP T G G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 SDK2 54549 broad.mit.edu 37 17 71429919 71429919 + Missense_Mutation SNP C A A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 SERPINA12 145264 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 94964436 94964436 + Missense_Mutation SNP T T A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 SIPA1L1 26037 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 72055449 72055449 + Missense_Mutation SNP A A T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 SLC26A11 284129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78196524 78196524 + Missense_Mutation SNP T T G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 SLCO4C1 353189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 101597654 101597654 + Missense_Mutation SNP A A G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A A G A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 SNRPB 6628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 2442418 2442418 + Missense_Mutation SNP C C T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 SON 6651 hgsc.bcm.edu 37 21 34948697 34948697 + Frame_Shift_Del DEL A A - rs34373121 bycluster TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 SPESP1 246777 hgsc.bcm.edu;ucsc.edu 37 15 69238350 69238350 + Frame_Shift_Del DEL A A - novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 SPG21 51324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65273294 65273294 + Missense_Mutation SNP G G T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 STAB2 55576 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104056757 104056757 + Missense_Mutation SNP C C A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 SVEP1 79987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 113170849 113170849 + Missense_Mutation SNP A A T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 SYT16 83851 hgsc.bcm.edu;ucsc.edu 37 14 62462755 62462755 + Silent SNP G G A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 TAS2R42 353164 broad.mit.edu;hgsc.bcm.edu 37 12 11339532 11339532 + Missense_Mutation SNP T T G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 TCF3 6929 broad.mit.edu 37 19 1625673 1625673 + Missense_Mutation SNP C T T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 TCOF1 6949 hgsc.bcm.edu;ucsc.edu 37 5 149771631 149771632 + Frame_Shift_Ins INS - - C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 THAP9 79725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83838698 83838698 + Missense_Mutation SNP G G A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 TLL1 7092 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 166986847 166986847 + Missense_Mutation SNP G G C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 TM9SF2 9375 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 100207857 100207857 + Missense_Mutation SNP T T A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 TMC5 79838 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 19475156 19475156 + Missense_Mutation SNP A A G novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 TMEM169 92691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 216965265 216965265 + Missense_Mutation SNP A A T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 TNKS 8658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 9588524 9588524 + Missense_Mutation SNP A A C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 TOPBP1 11073 broad.mit.edu;hgsc.bcm.edu 37 3 133329915 133329915 + Missense_Mutation SNP C C A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 TPM2 7169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35684288 35684288 + Missense_Mutation SNP C C T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 TRAPPC8 22878 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 29511372 29511372 + Missense_Mutation SNP T T A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 UBE2J1 51465 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 90039627 90039627 + Missense_Mutation SNP G G T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 Unknown 0 broad.mit.edu 37 9 88455022 88455022 + RNA SNP G A A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 Unknown 0 broad.mit.edu 37 9 90746972 90746972 + Missense_Mutation SNP G T T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191469 10191469 + Splice_Site SNP A A G rs5030816 TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A A G A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ZFP90 146198 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68598499 68598499 + Silent SNP T T C novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ZFR2 23217 broad.mit.edu 37 19 3831667 3831667 + Missense_Mutation SNP C T T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ZNF185 7739 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 152132417 152132417 + Missense_Mutation SNP A A T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ZNF595 152687 hgsc.bcm.edu 37 4 85995 85996 + Frame_Shift_Ins INS - - A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ZNF626 199777 hgsc.bcm.edu 37 19 20807177 20807178 + Frame_Shift_Ins INS - - A rs35575803 TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ZNF761 388561 hgsc.bcm.edu 37 19 53958187 53958187 + Frame_Shift_Del DEL A A - novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ZNF786 136051 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 148769510 148769510 + Silent SNP A A T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 ZNF814 730051 broad.mit.edu 37 19 58385546 58385546 + Missense_Mutation SNP G T T novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2 PIK3CA 5290 broad.mit.edu 37 3 178952077 178952077 + Missense_Mutation SNP T A A novel TCGA-B0-5713-01A-11D-1669-08 TCGA-B0-5713-11A-01D-1669-08 T T T A T T Unknown Valid Somatic Phase_I WXS PGM . . Illumina GAIIx 2f35dbf4-3223-4550-951b-1409a30ece68 befd76b7-c750-45f1-b5fd-a132ad345ac2