Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCB8 11194 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150731895 150731895 + Silent SNP C C T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 ANKRD12 23253 hgsc.bcm.edu;ucsc.edu 37 18 9254423 9254423 + Frame_Shift_Del DEL A A - novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 ASPSCR1 79058 broad.mit.edu;hgsc.bcm.edu 37 17 79941541 79941541 + Silent SNP C C T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 BCAN 63827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156628842 156628842 + Silent SNP G G A novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 BCAN 63827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156628843 156628843 + Missense_Mutation SNP G G C novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 BTN3A1 11119 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 26413447 26413447 + Missense_Mutation SNP G G A novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 C15orf55 256646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 34640772 34640772 + Missense_Mutation SNP T T A novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 C4orf29 80167 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 128905554 128905554 + Silent SNP C C T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 CASP8AP2 9994 hgsc.bcm.edu;ucsc.edu 37 6 90573431 90573432 + Frame_Shift_Del DEL TG TG - novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 TG TG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 CD7 924 hgsc.bcm.edu 37 17 80274159 80274160 + Frame_Shift_Ins INS - - T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 CD7 924 hgsc.bcm.edu 37 17 80274162 80274162 + Frame_Shift_Del DEL G G - novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 CDK12 51755 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37681093 37681093 + Nonsense_Mutation SNP C C T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 CREBBP 1387 broad.mit.edu;ucsc.edu 37 16 3860701 3860701 + Missense_Mutation SNP A G G novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 CRISPLD1 83690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 75937789 75937789 + Missense_Mutation SNP G G C novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 DCHS2 54798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 155219151 155219151 + Silent SNP A A T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 DNAJC6 9829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 65831861 65831861 + Silent SNP T T C novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 EHF 26298 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 34670585 34670585 + Silent SNP G G C novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 EPHA5 2044 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 66467834 66467834 + Silent SNP C C G novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 FAM126A 84668 hgsc.bcm.edu;ucsc.edu 37 7 23000857 23000858 + Frame_Shift_Del DEL CA CA - novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 CA CA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 FLG 2312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152282336 152282336 + Missense_Mutation SNP T T A novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 GPR126 57211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 142741085 142741085 + Missense_Mutation SNP A A T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 GRID1 2894 broad.mit.edu;hgsc.bcm.edu 37 10 87966375 87966375 + Missense_Mutation SNP G G A novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 GXYLT1 283464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 42503369 42503369 + Missense_Mutation SNP G G A novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 HAUS1 115106 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 43700027 43700027 + Splice_Site SNP G G A novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 HCFC1 3054 broad.mit.edu;ucsc.edu 37 X 153215018 153215018 + Missense_Mutation SNP C T T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 IGSF3 3321 broad.mit.edu 37 1 117131468 117131468 + Missense_Mutation SNP C T T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 KIAA1033 23325 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 105536914 105536914 + Missense_Mutation SNP A A G novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 KIAA1875 340390 broad.mit.edu 37 8 145169270 145169270 + Frame_Shift_Del DEL C - - novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 KRT13 3860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39659631 39659631 + Missense_Mutation SNP G G C novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 KRTAP5-2 440021 hgsc.bcm.edu 37 11 1619181 1619181 + Silent SNP G G A rs61869704 TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 LETMD1 25875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 51449626 51449626 + Missense_Mutation SNP T T G novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 LOC388692 388692 broad.mit.edu 37 1 149287048 149287049 + RNA INS - A A rs78792181 bycluster;by1000genomes TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 LRP6 4040 hgsc.bcm.edu;ucsc.edu 37 12 12315207 12315207 + Frame_Shift_Del DEL C C - novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 LSM12 124801 broad.mit.edu;hgsc.bcm.edu 37 17 42141197 42141197 + Missense_Mutation SNP G G T rs17854322 alternate_allele TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 MAP3K6 9064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 27684801 27684801 + Missense_Mutation SNP G G A novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 MAST4 375449 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66459285 66459285 + Silent SNP C C T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 MEGF10 84466 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 126776499 126776499 + Missense_Mutation SNP G G A novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 MEGF8 1954 broad.mit.edu 37 19 42860310 42860310 + Missense_Mutation SNP G T T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 MUC4 4585 broad.mit.edu 37 3 195506627 195506627 + Missense_Mutation SNP T G G rs145875920 by1000genomes TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 MYADM 91663 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54377173 54377173 + Silent SNP C C T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 MYO16 23026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 109859148 109859148 + Missense_Mutation SNP C C A novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 NANS 54187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 100843297 100843297 + Missense_Mutation SNP T T C novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 NAV3 89795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 78516003 78516003 + Missense_Mutation SNP G G A novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 NBPF10 100132406 broad.mit.edu 37 1 146420167 146420167 + Missense_Mutation SNP G A A rs61812001 TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 OPCML 4978 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 132527098 132527098 + Missense_Mutation SNP G G A rs137852691 alternate_allele TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 PARD3 56288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 34626340 34626340 + Missense_Mutation SNP T T G novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 PCNXL3 399909 broad.mit.edu;ucsc.edu 37 11 65391403 65391403 + Missense_Mutation SNP G A A novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 PMPCA 23203 broad.mit.edu 37 9 139305134 139305134 + Missense_Mutation SNP T C C novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 POLG 5428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89864148 89864148 + Missense_Mutation SNP C C G novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 PROS1 5627 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 93624946 93624946 + Nonsense_Mutation SNP C C A novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 RAI14 26064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 34823798 34823798 + Missense_Mutation SNP T T G novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 RPF1 80135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 84945169 84945169 + Silent SNP C C A novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 SERPINA3 12 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 95081158 95081158 + Missense_Mutation SNP A A G rs145819878 TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 SHANK1 50944 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51219979 51219979 + Silent SNP G G A novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 SLC36A1 206358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150843145 150843145 + Missense_Mutation SNP G G T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 SPEN 23013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 16256538 16256538 + Missense_Mutation SNP C C T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 SSH1 54434 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 109182653 109182653 + Missense_Mutation SNP G G A rs151176410 byfrequency TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 ST6GALNAC5 81849 broad.mit.edu;hgsc.bcm.edu 37 1 77510087 77510087 + Missense_Mutation SNP C C T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 SYCP2L 221711 broad.mit.edu;ucsc.edu 37 6 10911079 10911079 + Missense_Mutation SNP G T T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 TMEM200A 114801 broad.mit.edu;hgsc.bcm.edu 37 6 130761752 130761752 + Missense_Mutation SNP G G C novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 TUBGCP2 10844 broad.mit.edu 37 10 135106637 135106637 + Silent SNP C T T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 UGT2B7 7364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 69972925 69972925 + Silent SNP T T C rs147582860 byfrequency;alternate_allele TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 URB1 9875 broad.mit.edu;hgsc.bcm.edu 37 21 33688961 33688961 + Silent SNP G G A novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 WDR52 55779 broad.mit.edu 37 3 113049451 113049451 + Missense_Mutation SNP A C C rs79365690 TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 XYLB 9942 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38390050 38390050 + Missense_Mutation SNP G G T rs146884889 alternate_allele TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 ZBTB6 10773 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 125674096 125674096 + Missense_Mutation SNP G G T novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 ZFAND5 7763 broad.mit.edu;ucsc.edu 37 9 74971943 74971943 + Nonsense_Mutation SNP G A A novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 ZNF341 84905 broad.mit.edu 37 20 32378919 32378920 + Frame_Shift_Ins INS - C C novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6 ZYG11B 79699 hgsc.bcm.edu;ucsc.edu 37 1 53250580 53250580 + Frame_Shift_Del DEL T T - novel TCGA-B0-5706-01A-11D-1534-10 TCGA-B0-5706-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b60cf910-2d2e-483a-a9de-ce1e5f8d3825 78238d1e-1395-4c40-a240-416fafd642b6