Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AKAP12 9590 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 151670459 151670459 + Silent SNP C C A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 ALPI 248 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 233321772 233321772 + Missense_Mutation SNP C C A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 AMDHD2 51005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2579481 2579481 + Missense_Mutation SNP G G A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 ANKRD39 51239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 97514102 97514102 + Missense_Mutation SNP T T C novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 ARHGAP11B 89839 broad.mit.edu 37 15 30938440 30938440 + RNA SNP A G G novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 C1orf129 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 170965678 170965678 + Silent SNP G G T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 C20orf166 128826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 61167749 61167749 + Silent SNP G G A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 C20orf26 26074 broad.mit.edu;ucsc.edu 37 20 20123553 20123553 + Silent SNP G A A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 C9orf174 100499483 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 100132270 100132270 + Missense_Mutation SNP A A C novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 CACNA1A 773 broad.mit.edu;hgsc.bcm.edu 37 19 13325351 13325351 + Nonsense_Mutation SNP G G A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 CCDC61 729440 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 46519960 46519960 + Missense_Mutation SNP A A C novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 CDC14A 8556 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100928332 100928332 + Missense_Mutation SNP T T C novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 CHAF1A 10036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 4409322 4409322 + Missense_Mutation SNP C C G novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 COL8A2 1296 hgsc.bcm.edu 37 1 36563461 36563462 + Frame_Shift_Ins INS - - G novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 CUL9 23113 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43170869 43170869 + Missense_Mutation SNP G G T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 CXCR2P1 3580 broad.mit.edu 37 2 218925340 218925340 + Silent SNP G T T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 DDX50 79009 hgsc.bcm.edu;ucsc.edu 37 10 70706119 70706128 + Frame_Shift_Del DEL TGATTCCGAC TGATTCCGAC - novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 TGATTCCGAC TGATTCCGAC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 DHX15 1665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 24541862 24541862 + Missense_Mutation SNP T T A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 DNAJA4 55466 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 78565450 78565450 + Silent SNP A A G novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 EPT1 85465 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 26587787 26587787 + Missense_Mutation SNP G G A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 EVX1 2128 broad.mit.edu;ucsc.edu 37 7 27282680 27282680 + Missense_Mutation SNP C G G novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 FERMT2 10979 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 53417220 53417220 + Missense_Mutation SNP G G A rs147527926 byfrequency TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 FHOD3 80206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 34156435 34156435 + Missense_Mutation SNP A A G novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 FHOD3 80206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 34192014 34192014 + Nonsense_Mutation SNP A A T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 FLT4 2324 hgsc.bcm.edu;ucsc.edu 37 5 180039595 180039600 + In_Frame_Del DEL TCAGCA TCAGCA - novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 TCAGCA TCAGCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 FMN2 56776 broad.mit.edu 37 1 240255569 240255571 + In_Frame_Del DEL GGC - - rs140531536 bycluster;by1000genomes TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 GGC GGC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 GIMAP8 155038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150164190 150164190 + Missense_Mutation SNP G G A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 GLIS1 148979 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 53972295 53972295 + Silent SNP G G T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 GON4L 54856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155730387 155730387 + Missense_Mutation SNP G G T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 GRHPR 9380 hgsc.bcm.edu 37 9 37424907 37424908 + Frame_Shift_Ins INS - - GG novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 HBXIP 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110948984 110948984 + Missense_Mutation SNP A A G novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 HECTD2 143279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 93220253 93220253 + Missense_Mutation SNP C C T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 HRC 3270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49657389 49657389 + Missense_Mutation SNP A A T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 HSPA8 3312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 122931841 122931841 + Silent SNP G G A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 HTT 3064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 3138012 3138012 + Silent SNP A A G novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 IRX1 79192 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 3599432 3599432 + Missense_Mutation SNP C C A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 KDM5C 8242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 53239905 53239905 + Missense_Mutation SNP G G C novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 KIAA1210 57481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 118222879 118222879 + Missense_Mutation SNP T T C novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 LINGO1 84894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 77907673 77907673 + Missense_Mutation SNP G G C novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 LPPR4 9890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 99771417 99771417 + Missense_Mutation SNP A A T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 MAP7 9053 broad.mit.edu;hgsc.bcm.edu 37 6 136683700 136683700 + Missense_Mutation SNP C C A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 MBNL3 55796 hgsc.bcm.edu 37 X 131525019 131525019 + Frame_Shift_Del DEL A A - novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 MRPL18 29074 broad.mit.edu 37 6 160218317 160218317 + Splice_Site SNP A C C novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 MRPL22 29093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 154330404 154330404 + Missense_Mutation SNP A A T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 MUC5B 727897 broad.mit.edu;hgsc.bcm.edu 37 11 1264224 1264224 + Silent SNP C C A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 MX2 4600 hgsc.bcm.edu;ucsc.edu 37 21 42778676 42778676 + Silent SNP G G A rs61730267 bycluster;byfrequency;by1000genomes TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 NAT9 26151 broad.mit.edu;ucsc.edu 37 17 72769778 72769778 + Missense_Mutation SNP A G G novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 NDN 4692 broad.mit.edu;hgsc.bcm.edu 37 15 23932263 23932263 + Silent SNP C C T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 NFAT5 10725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 69727140 69727140 + Missense_Mutation SNP C C A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 NFKBID 84807 hgsc.bcm.edu 37 19 36387710 36387711 + Frame_Shift_Ins INS - - G novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 NIPSNAP3B 55335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 107528730 107528730 + Missense_Mutation SNP T T C novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 NPFFR2 10886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 73013490 73013490 + Missense_Mutation SNP G G A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 NT5C2 22978 hgsc.bcm.edu;ucsc.edu 37 10 104934672 104934673 + Frame_Shift_Del DEL AT AT - novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 AT AT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 NUP210 23225 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 13429823 13429823 + Missense_Mutation SNP T T A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 OR1D2 4991 broad.mit.edu;hgsc.bcm.edu 37 17 2995985 2995985 + Nonsense_Mutation SNP G G T rs140264769 TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 PALLD 23022 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 169633073 169633073 + Missense_Mutation SNP C C A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 PAN3 255967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 28844883 28844883 + Missense_Mutation SNP C C A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 PARP12 64761 broad.mit.edu 37 7 139741631 139741631 + Missense_Mutation SNP C A A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 PCDHA5 56143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140203675 140203675 + Missense_Mutation SNP G G T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 PCDHGA10 56106 broad.mit.edu 37 5 140794506 140794506 + Silent SNP C T T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 PHACTR1 221692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 13206174 13206174 + Silent SNP G G A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 PHF15 23338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 133887864 133887864 + Silent SNP T T C novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 PITPNM2 57605 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 123481921 123481921 + Missense_Mutation SNP G G T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 PKHD1L1 93035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110530496 110530496 + Silent SNP T T A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 PLCD4 84812 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219498885 219498885 + Missense_Mutation SNP T T C novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 PLEC 5339 broad.mit.edu 37 8 145004392 145004392 + Silent SNP G A A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 POTEE 445582 broad.mit.edu 37 2 131995769 131995769 + Missense_Mutation SNP A C C novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 PSMC6 5706 broad.mit.edu;hgsc.bcm.edu 37 14 53187597 53187597 + Missense_Mutation SNP G G A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 PTPN11 5781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 112891015 112891015 + Missense_Mutation SNP C C T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 SLC17A1 6568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 25811911 25811911 + Missense_Mutation SNP T T A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 SLC3A2 6520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62650443 62650443 + Missense_Mutation SNP A A G novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 SLC44A4 80736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 31833744 31833744 + Missense_Mutation SNP G G T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 SNAI1 6615 broad.mit.edu 37 20 48600840 48600840 + Missense_Mutation SNP G T T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 SPTBN1 6711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 54891784 54891784 + Missense_Mutation SNP T T A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 STAG3L2 442582 broad.mit.edu 37 7 74300557 74300564 + Frame_Shift_Del DEL AGAGCTCC - - rs4029836 TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 AGAGCTCC AGAGCTCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 STX7 8417 broad.mit.edu;hgsc.bcm.edu 37 6 132785212 132785212 + Missense_Mutation SNP T T A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 STX7 8417 broad.mit.edu;hgsc.bcm.edu 37 6 132785213 132785213 + Missense_Mutation SNP A A T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 SUDS3 64426 hgsc.bcm.edu 37 12 118839609 118839609 + Frame_Shift_Del DEL T T - novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 TACR3 6870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 104510994 104510994 + Missense_Mutation SNP G G C novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 TIAF1 9220 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27401024 27401024 + Missense_Mutation SNP G G T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 TRIOBP 11078 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 38130449 38130449 + Missense_Mutation SNP G G C novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 TSPYL1 7259 hgsc.bcm.edu;ucsc.edu 37 6 116599803 116599804 + Frame_Shift_Del DEL TT TT - novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 TT TT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 TUBG1 7283 broad.mit.edu;hgsc.bcm.edu 37 17 40765980 40765980 + Silent SNP C C T rs145699955 TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 TYK2 7297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10468695 10468695 + Silent SNP G G A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 UCHL3 7347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 76140954 76140954 + Missense_Mutation SNP G G A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 UGT1A8 54576 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234526875 234526875 + Nonsense_Mutation SNP C C A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 Unknown 0 broad.mit.edu 37 17 16725606 16725607 + RNA INS - C C novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 UTRN 7402 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 144812074 144812074 + Missense_Mutation SNP C C G novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10183867 10183867 + Nonsense_Mutation SNP C C A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454;Illumina Miseq;PacBio Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 WFDC5 149708 broad.mit.edu;hgsc.bcm.edu 37 20 43739049 43739049 + Missense_Mutation SNP G G T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 XIRP1 165904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 39225988 39225988 + Missense_Mutation SNP G G A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 XIRP1 165904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 39225989 39225989 + Missense_Mutation SNP A A T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 YAP1 10413 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 102100588 102100588 + Silent SNP T T C novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 ZBTB44 29068 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 130131043 130131043 + Silent SNP A A T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 ZCCHC6 79670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 88960584 88960584 + Missense_Mutation SNP C C A novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 ZNF879 345462 broad.mit.edu;ucsc.edu 37 5 178454496 178454496 + Missense_Mutation SNP T G G novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 ZNF91 7644 hgsc.bcm.edu;ucsc.edu 37 19 23543184 23543187 + Frame_Shift_Del DEL GATT GATT - novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 GATT GATT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212 ZSWIM5 57643 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 45506168 45506168 + Missense_Mutation SNP G G T novel TCGA-B0-5106-01A-01D-1421-08 TCGA-B0-5106-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c0e28603-7204-416d-ba3d-5377a38f677d 6d436195-d34a-4f6a-83ca-217c4489b212