Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AP2A1 160 broad.mit.edu;hgsc.bcm.edu 37 19 50309986 50309986 + Missense_Mutation SNP C C A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 APOBEC3H 164668 hgsc.bcm.edu 37 22 39496323 39496325 + In_Frame_Del DEL AAC AAC - rs140936762 bycluster;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 AAC AAC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 AQP7 364 hgsc.bcm.edu 37 9 33395108 33395108 + Silent SNP G G A rs2381003 byfrequency TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 ARFGEF2 10564 hgsc.bcm.edu;ucsc.edu 37 20 47601976 47601982 + Frame_Shift_Del DEL CAAGGTT CAAGGTT - novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 CAAGGTT CAAGGTT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 ARGFX 503582 broad.mit.edu;hgsc.bcm.edu 37 3 121305227 121305227 + Missense_Mutation SNP C C G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 ATP5S 27109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 50779730 50779730 + RNA SNP C C T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 ATRNL1 26033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 116881513 116881513 + Missense_Mutation SNP G G C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 B3GNT2 10678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 62450134 62450134 + Missense_Mutation SNP A A G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 C17orf104 284071 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42745374 42745374 + Missense_Mutation SNP T T G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 C17orf99 100141515 broad.mit.edu;hgsc.bcm.edu 37 17 76157222 76157222 + Missense_Mutation SNP A A T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 C1orf124 0 broad.mit.edu;hgsc.bcm.edu 37 1 231489083 231489083 + Silent SNP A A G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 C1orf173 127254 broad.mit.edu;ucsc.edu 37 1 75102000 75102000 + Silent SNP G T T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 C1orf213 148898 broad.mit.edu 37 1 23696047 23696047 + Missense_Mutation SNP A G G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 C20orf194 25943 broad.mit.edu;hgsc.bcm.edu 37 20 3355713 3355713 + Missense_Mutation SNP C C T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 C2orf18 0 broad.mit.edu 37 2 27001276 27001276 + Missense_Mutation SNP G A A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 C9orf93 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 15724841 15724841 + Missense_Mutation SNP G G A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 CD24 100133941 broad.mit.edu 37 Y 21154403 21154403 + Missense_Mutation SNP T G G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 CDK5RAP2 55755 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 123205921 123205921 + Missense_Mutation SNP T T A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 CDX4 1046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 72673463 72673463 + Missense_Mutation SNP G G A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 CES4A 283848 hgsc.bcm.edu 37 16 67029715 67029715 + Silent SNP T T C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 CFLAR 8837 broad.mit.edu;hgsc.bcm.edu 37 2 202025389 202025389 + Missense_Mutation SNP A A G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 CHD3 1107 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7797756 7797756 + Missense_Mutation SNP G G A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 CHSY3 337876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 129520692 129520692 + Missense_Mutation SNP G G C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 COL22A1 169044 broad.mit.edu;hgsc.bcm.edu 37 8 139824101 139824101 + Missense_Mutation SNP C C T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 COL24A1 255631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 86315055 86315055 + Missense_Mutation SNP C C G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 COL6A6 131873 broad.mit.edu;hgsc.bcm.edu 37 3 130380932 130380932 + Missense_Mutation SNP C C G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 CRTAC1 55118 hgsc.bcm.edu 37 10 99683108 99683108 + Missense_Mutation SNP C C A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 CSF1R 1436 broad.mit.edu;hgsc.bcm.edu 37 5 149449864 149449864 + Nonsense_Mutation SNP G G T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 CSMD1 64478 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 3253877 3253877 + Missense_Mutation SNP G G A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 CYP21A2 1589 hgsc.bcm.edu 37 6 31974850 31974852 + In_Frame_Del DEL GAG GAG - novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 GAG GAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 DENND2C 163259 broad.mit.edu 37 1 115151368 115151368 + Missense_Mutation SNP A G G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 DHX57 90957 broad.mit.edu 37 2 39088979 39088979 + Missense_Mutation SNP C A A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 DIP2C 22982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 390776 390776 + Silent SNP G G T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 DLL4 54567 broad.mit.edu;hgsc.bcm.edu 37 15 41223809 41223809 + Missense_Mutation SNP G G A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 DMBT1 1755 hgsc.bcm.edu 37 10 124345866 124345866 + Missense_Mutation SNP G G C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 DNMT1 1786 broad.mit.edu 37 19 10257171 10257171 + Missense_Mutation SNP T G G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 DOCK9 23348 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 99505670 99505670 + Missense_Mutation SNP A A T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 DOK3 79930 hgsc.bcm.edu 37 5 176930172 176930174 + In_Frame_Del DEL GAG GAG - rs138153794 bycluster;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 GAG GAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 EMILIN2 84034 broad.mit.edu;hgsc.bcm.edu 37 18 2891708 2891708 + Nonsense_Mutation SNP C C G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 EMR3 84658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14758037 14758037 + Missense_Mutation SNP C C T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 FBXO34 55030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 55817459 55817459 + Missense_Mutation SNP G G T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 FKBP15 23307 broad.mit.edu 37 9 115932150 115932151 + In_Frame_Ins INS - TTC TTC rs113480096 bycluster;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 FNIP1 96459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 131042127 131042127 + Missense_Mutation SNP C C G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 FRYL 285527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 48525026 48525026 + Missense_Mutation SNP G G C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 GLYAT 10249 broad.mit.edu;ucsc.edu 37 11 58477555 58477555 + Missense_Mutation SNP C A A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 GOLGB1 2804 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121412704 121412704 + Silent SNP A A G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 GPR32 2854 hgsc.bcm.edu 37 19 51274851 51274851 + Missense_Mutation SNP A A C rs78840344 bycluster TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 GRWD1 83743 broad.mit.edu;hgsc.bcm.edu 37 19 48954349 48954349 + Missense_Mutation SNP C C T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 HIRIP3 8479 broad.mit.edu;hgsc.bcm.edu 37 16 30006027 30006027 + Missense_Mutation SNP G G A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 HOGA1 112817 broad.mit.edu;hgsc.bcm.edu 37 10 99344532 99344532 + Silent SNP C C T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 HTRA3 94031 broad.mit.edu 37 4 8288470 8288470 + Missense_Mutation SNP A G G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 IL33 90865 broad.mit.edu;ucsc.edu 37 9 6252967 6252967 + Missense_Mutation SNP G C C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 KCNJ12 3768 hgsc.bcm.edu 37 17 21319716 21319716 + Silent SNP G G A rs78135255 bycluster;byfrequency TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 KDR 3791 broad.mit.edu;hgsc.bcm.edu 37 4 55973949 55973949 + Missense_Mutation SNP A A C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 LILRB4 11006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 55177763 55177763 + Missense_Mutation SNP G G A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 LRP2 4036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170028541 170028541 + Silent SNP T T C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 LRRC4 64101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127669258 127669258 + Missense_Mutation SNP G G A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 MAP2K3 5606 hgsc.bcm.edu 37 17 21204192 21204192 + Missense_Mutation SNP C C T rs56216806 bycluster;byfrequency;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 MRPL32 64983 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 42974658 42974658 + Missense_Mutation SNP G G A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 MS4A6E 245802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60102420 60102420 + Missense_Mutation SNP G G C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 MST1P2 11209 broad.mit.edu 37 1 16974549 16974549 + RNA SNP C G G rs71240336 TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 MTA2 9219 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62362921 62362921 + Missense_Mutation SNP C C T rs139421444 TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 MUC20 200958 hgsc.bcm.edu 37 3 195452960 195452960 + Missense_Mutation SNP G G A rs4093817 TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 MUC4 4585 broad.mit.edu 37 3 195507324 195507324 + Missense_Mutation SNP G C C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 MUC4 4585 broad.mit.edu 37 3 195509127 195509127 + Silent SNP A G G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 MUC6 4588 broad.mit.edu 37 11 1021245 1021245 + Missense_Mutation SNP C T T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 MYLK 4638 broad.mit.edu;hgsc.bcm.edu 37 3 123418999 123418999 + Missense_Mutation SNP C C T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 NBPF10 100132406 broad.mit.edu 37 1 145311931 145311931 + Missense_Mutation SNP C T T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 NCL 4691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 232322358 232322358 + Missense_Mutation SNP C C G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 NLRC5 84166 hgsc.bcm.edu;ucsc.edu 37 16 57065327 57065327 + Missense_Mutation SNP T T G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 NNMT 4837 broad.mit.edu;hgsc.bcm.edu 37 11 114183068 114183068 + Missense_Mutation SNP G G C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 NRBF2 29982 hgsc.bcm.edu 37 10 64913306 64913306 + Frame_Shift_Del DEL T T - novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 NSD1 64324 broad.mit.edu;ucsc.edu 37 5 176636690 176636690 + Silent SNP G A A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 NT5DC3 51559 broad.mit.edu;hgsc.bcm.edu 37 12 104208888 104208888 + Missense_Mutation SNP A A C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 OR1I1 126370 hgsc.bcm.edu;ucsc.edu 37 19 15198241 15198241 + Missense_Mutation SNP G G A rs75278395 bycluster;byfrequency;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 OR4N2 390429 broad.mit.edu 37 14 20296229 20296229 + Missense_Mutation SNP C A A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 OR51T1 401665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4903717 4903717 + Silent SNP C C T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 OR7A10 390892 hgsc.bcm.edu 37 19 14952560 14952560 + Missense_Mutation SNP G G T rs12985894 bycluster;byfrequency;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 OSBPL3 26031 hgsc.bcm.edu;ucsc.edu 37 7 24839885 24839885 + Frame_Shift_Del DEL C C - novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 P2RY12 64805 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 151056476 151056476 + Missense_Mutation SNP A A G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 PHC2 1912 hgsc.bcm.edu 37 1 33820749 33820769 + In_Frame_Del DEL GGCTGCTGCTGTTGTGGCTGT GGCTGCTGCTGTTGTGGCTGT - novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 GGCTGCTGCTGTTGTGGCTGT GGCTGCTGCTGTTGTGGCTGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 PI4KA 5297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 21192985 21192985 + Missense_Mutation SNP A A C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 PIF1 80119 hgsc.bcm.edu 37 15 65114484 65114484 + Silent SNP G G A rs8031690 bycluster;byfrequency;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 PLCD3 113026 hgsc.bcm.edu 37 17 43192549 43192550 + Frame_Shift_Ins INS - - C rs75518897 bycluster;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 PLD5 200150 broad.mit.edu;hgsc.bcm.edu 37 1 242253369 242253369 + Silent SNP G G A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 PRB2 653247 hgsc.bcm.edu 37 12 11546808 11546808 + Silent SNP A A G rs1921331 byfrequency TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 PRDM14 63978 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 70978469 70978469 + Splice_Site SNP C C A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 PRKAR2B 5577 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 106799894 106799894 + Missense_Mutation SNP C C G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 PRPF3 9129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150312943 150312943 + Silent SNP C C T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 PSMC4 5704 hgsc.bcm.edu 37 19 40480501 40480501 + Silent SNP C C T rs11542840 bycluster;byfrequency;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 RAP1GDS1 5910 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 99355174 99355174 + Missense_Mutation SNP G G A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 RAP1GDS1 5910 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 99355175 99355175 + Missense_Mutation SNP C C G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 RBMX 27316 hgsc.bcm.edu 37 X 135957716 135957716 + Missense_Mutation SNP A A G rs142284545 byfrequency TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 REST 5978 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 57797456 57797456 + Missense_Mutation SNP C C T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 RNU11 26824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 28975159 28975159 + RNA SNP T T C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 SCN2A 6326 broad.mit.edu;hgsc.bcm.edu 37 2 166201197 166201197 + Missense_Mutation SNP G G A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47165361 47165361 + Missense_Mutation SNP C C G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C C G C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 SETD2 29072 broad.mit.edu;ucsc.edu 37 3 47165360 47165360 + Nonsense_Mutation SNP G A A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G G A G G Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 SLC15A2 6565 broad.mit.edu;hgsc.bcm.edu 37 3 121613330 121613330 + Missense_Mutation SNP C C G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 SLC16A4 9122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110921782 110921782 + Silent SNP A A C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 SLC17A6 57084 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 22364813 22364813 + Missense_Mutation SNP C C A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 SLC17A8 246213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100813894 100813894 + Missense_Mutation SNP C C T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 SLC6A12 6539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 319083 319083 + Missense_Mutation SNP T T C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 SMC2 10592 broad.mit.edu;ucsc.edu 37 9 106864804 106864804 + Missense_Mutation SNP C A A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 SPRY4 81848 hgsc.bcm.edu 37 5 141694415 141694415 + Missense_Mutation SNP G G A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 STARD13 90627 broad.mit.edu;hgsc.bcm.edu 37 13 33684212 33684212 + Missense_Mutation SNP G G T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 SUGT1 10910 broad.mit.edu;hgsc.bcm.edu 37 13 53231666 53231666 + Splice_Site SNP G G C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 TADA1 117143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 166833059 166833059 + Splice_Site SNP A A T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 TAF2 6873 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 120814248 120814248 + Missense_Mutation SNP A A G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 TECPR2 9895 broad.mit.edu;hgsc.bcm.edu 37 14 102916037 102916037 + Silent SNP G G A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 TNPO3 23534 broad.mit.edu;ucsc.edu 37 7 128607436 128607436 + Missense_Mutation SNP C A A rs188168905 by1000genomes;alternate_allele TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 TRIL 9865 hgsc.bcm.edu 37 7 28997498 28997498 + Frame_Shift_Del DEL C C - rs146025122 bycluster;by1000genomes TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 TSC2 7249 hgsc.bcm.edu;ucsc.edu 37 16 2112006 2112006 + Missense_Mutation SNP G G T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 TTLL3 26140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 9868880 9868880 + Silent SNP T T C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 TTN 7273 broad.mit.edu;ucsc.edu 37 2 179575503 179575503 + Missense_Mutation SNP C T T novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 UHRF1BP1L 23074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100478292 100478292 + Missense_Mutation SNP T T A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 UTP15 84135 broad.mit.edu;ucsc.edu 37 5 72864335 72864335 + Missense_Mutation SNP G A A novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 VHL 7428 broad.mit.edu;ucsc.edu 37 3 10191570 10191570 + Missense_Mutation SNP T G G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T T G T T Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 WARS 7453 broad.mit.edu 37 14 100809696 100809696 + Silent SNP A G G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 WASH7P 653635 broad.mit.edu 37 1 14976 14976 + RNA SNP G A A rs77117975 byfrequency TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 WDR52 55779 broad.mit.edu 37 3 113049451 113049451 + Missense_Mutation SNP A C C rs79365690 TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 WDR52 55779 broad.mit.edu;ucsc.edu 37 3 113022837 113022837 + Missense_Mutation SNP T G G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 ZAN 7455 hgsc.bcm.edu 37 7 100371476 100371477 + Frame_Shift_Ins INS - - G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 ZNF208 7757 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 22170044 22170044 + Missense_Mutation SNP C C G novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 ZNF544 27300 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58772269 58772269 + Silent SNP T T C novel TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4 ZNF98 148198 broad.mit.edu 37 19 22574468 22574468 + Silent SNP G A A rs4100176 bycluster TCGA-B0-4712-01A-01D-1501-10 TCGA-B0-4712-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 032b33f8-ff79-47de-8cb2-d744eab8bd1a b7ef4bb0-2d50-47f1-80df-3aae8da90df4