Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACTR5 79913 broad.mit.edu;hgsc.bcm.edu 37 20 37383750 37383750 + Missense_Mutation SNP A A G novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 AIFM2 84883 broad.mit.edu 37 10 71874016 71874016 + Missense_Mutation SNP C A A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 ALKBH7 84266 broad.mit.edu 37 19 6374925 6374925 + Missense_Mutation SNP C A A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 ATF6B 1388 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 32084267 32084267 + Missense_Mutation SNP C C T novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 C10orf27 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 72541707 72541707 + Missense_Mutation SNP T T C novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 C5orf47 133491 hgsc.bcm.edu;ucsc.edu 37 5 173426713 173426713 + Frame_Shift_Del DEL G G - novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 C9orf173 441476 broad.mit.edu 37 9 140147247 140147247 + Missense_Mutation SNP G A A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 CTTNBP2 83992 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 117417736 117417736 + Silent SNP A A T novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 DCHS2 54798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 155156296 155156296 + Missense_Mutation SNP C C G novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 DGKH 160851 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 42773767 42773767 + Missense_Mutation SNP C C T novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 DKKL1 27120 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49869088 49869088 + Missense_Mutation SNP G G T novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 DNAJC10 54431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 183623959 183623959 + Silent SNP T T C rs140227116 bycluster;by1000genomes TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 FAM123C 0 broad.mit.edu 37 2 131520998 131520998 + Silent SNP G A A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 FBXO22 26263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 76222396 76222396 + Missense_Mutation SNP T T A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 FMNL2 114793 hgsc.bcm.edu 37 2 153476066 153476066 + Silent SNP G G A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 FMNL2 114793 hgsc.bcm.edu 37 2 153476069 153476069 + Silent SNP C C A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 FZR1 51343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 3533336 3533336 + Silent SNP G G A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 GAL3ST2 64090 broad.mit.edu;hgsc.bcm.edu 37 2 242741353 242741353 + Missense_Mutation SNP G G T novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 GBF1 8729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 104111129 104111129 + Nonsense_Mutation SNP C C T novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 GPCPD1 56261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 5559074 5559074 + Missense_Mutation SNP T T C novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 HEATR7B2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 41012760 41012760 + Missense_Mutation SNP G G C novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 HOXC8 3224 hgsc.bcm.edu;ucsc.edu 37 12 54403321 54403328 + Frame_Shift_Del DEL GCCTCCAA GCCTCCAA - novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 GCCTCCAA GCCTCCAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 IQGAP2 10788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 75866461 75866461 + Missense_Mutation SNP G G T novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 KIAA1279 26128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 70748679 70748679 + Missense_Mutation SNP G G A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 KLK10 5655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51518692 51518692 + Missense_Mutation SNP C C T rs142960865 TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 KRTAP10-6 386674 broad.mit.edu 37 21 46011526 46011526 + Silent SNP T A A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 LCN12 286256 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139849846 139849846 + Missense_Mutation SNP T T C novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 LOC100288778 100288778 broad.mit.edu 37 12 88906 88906 + Silent SNP A T T rs17854554 TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 LOC283922 283922 broad.mit.edu 37 16 74372644 74372644 + Silent SNP A G G rs2549260 bycluster TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 LOC96610 96610 broad.mit.edu 37 22 22664115 22664115 + RNA SNP A T T novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 LRP1 4035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57554852 57554852 + Missense_Mutation SNP T T C novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 MAGEB4 4115 broad.mit.edu;hgsc.bcm.edu 37 X 30260747 30260747 + Silent SNP C C G novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 MAN2A2 4122 broad.mit.edu 37 15 91454153 91454153 + Missense_Mutation SNP A C C novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 MKI67 4288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 129911780 129911780 + Missense_Mutation SNP G G C novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 MRPS5 64969 broad.mit.edu;hgsc.bcm.edu 37 2 95773989 95773989 + Nonsense_Mutation SNP C C A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9089041 9089041 + Missense_Mutation SNP C C A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 MUC4 4585 hgsc.bcm.edu 37 3 195508415 195508462 + In_Frame_Del DEL GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT - novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT GCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACAT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 NBPF10 100132406 broad.mit.edu 37 1 146398425 146398425 + Missense_Mutation SNP C A A rs61804604 TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 NCAPG 64151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 17826669 17826670 + Frame_Shift_Del DEL AA AA - novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 AA AA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 NEFH 4744 hgsc.bcm.edu 37 22 29885575 29885576 + In_Frame_Ins INS - - TGAGAAGGCCAAGTCCCC novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 NPNT 255743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 106863727 106863727 + Missense_Mutation SNP C C A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C C A C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 NTRK1 4914 broad.mit.edu 37 1 156843581 156843581 + Missense_Mutation SNP C A A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 NUMA1 4926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 71735322 71735322 + Missense_Mutation SNP T T C novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52598097 52598102 + In_Frame_Del DEL TAGCAG TAGCAG - novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 TAGCAG TAGCAG TAGCAG - TAGCAG TAGCAG Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 PKD1L3 342372 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 72033601 72033601 + Missense_Mutation SNP G G C novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 PKP2 5318 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 32975511 32975511 + Missense_Mutation SNP C C T novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 SCAPER 49855 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 77059317 77059317 + Missense_Mutation SNP A A G novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 SEMA3E 9723 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 83021907 83021907 + Missense_Mutation SNP C C A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 SETD2 29072 hgsc.bcm.edu;ucsc.edu 37 3 47108557 47108557 + Intron SNP T T A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T T A T T Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 SETD3 84193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 99932102 99932102 + Missense_Mutation SNP G G A rs186182372 by1000genomes;alternate_allele TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 SNX14 57231 hgsc.bcm.edu 37 6 86303401 86303401 + Silent SNP C C T novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 SPTBN1 6711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 54871514 54871514 + Frame_Shift_Del DEL A A - novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 TCF20 6942 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 42607162 42607162 + Missense_Mutation SNP C C T novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 TPRG1L 127262 broad.mit.edu;hgsc.bcm.edu 37 1 3545080 3545080 + Silent SNP C C T novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 TYRP1 7306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 12698513 12698513 + Silent SNP C C T novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 Unknown 0 broad.mit.edu 37 17 16721400 16721400 + RNA SNP A G G novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 Unknown 0 broad.mit.edu 37 X 155254961 155254961 + Silent SNP C T T rs2691322 bycluster TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191501 10191501 + Missense_Mutation SNP T T A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 ZFY 7544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 Y 2829144 2829144 + Nonsense_Mutation SNP C C T novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 ZMYM1 79830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35580687 35580687 + Missense_Mutation SNP T T A novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 ZMYM1 79830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35580688 35580688 + Missense_Mutation SNP C C T novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8 ZSCAN29 146050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43653850 43653850 + Silent SNP A A G novel TCGA-B0-4706-01A-01D-1501-10 TCGA-B0-4706-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 040fdd9b-db76-4357-9aed-77a8cbde058d c9228cb8-9a17-422d-b984-881a1cd1c4e8