Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACCN4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220396729 220396729 + Missense_Mutation SNP C C G novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf AMICA1 120425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118068750 118068750 + Missense_Mutation SNP T T G novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf ATP5A1 498 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 43666148 43666148 + Missense_Mutation SNP C C T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf AZI1 22994 hgsc.bcm.edu;ucsc.edu 37 17 79168674 79168677 + Frame_Shift_Del DEL GACA GACA - novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 GACA GACA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf BRCA2 675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 32915021 32915021 + Missense_Mutation SNP A A G novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf C10orf68 79741 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 33134530 33134530 + Missense_Mutation SNP A A C novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf C1orf158 93190 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 12820749 12820749 + Silent SNP G G A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf C21orf99 0 broad.mit.edu 37 21 14439357 14439357 + RNA SNP C G G novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf C4orf51 646603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 146650343 146650343 + Missense_Mutation SNP G G C novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf CAMK1D 57118 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 12833177 12833177 + Missense_Mutation SNP A A C novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf CARD9 64170 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139266450 139266450 + Silent SNP G G C novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf CCKAR 886 hgsc.bcm.edu;ucsc.edu 37 4 26483745 26483745 + Missense_Mutation SNP C C A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf CDC42BPA 8476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 227213828 227213828 + Silent SNP C C T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf CDK13 8621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 40085608 40085608 + Missense_Mutation SNP A A T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf CERCAM 51148 broad.mit.edu 37 9 131196482 131196482 + Missense_Mutation SNP G T T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf CERCAM 51148 broad.mit.edu 37 9 131196483 131196483 + Missense_Mutation SNP G T T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf CNNM3 26505 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 97483238 97483238 + Silent SNP A A C novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf CPNE5 57699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 36730739 36730739 + Silent SNP A A G novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf CSMD1 64478 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 4495044 4495044 + Missense_Mutation SNP C C A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf CTDSPL2 51496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 44751276 44751276 + Nonsense_Mutation SNP A A T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf CYB5R1 51706 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 202932260 202932260 + Missense_Mutation SNP C C T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf DHX57 90957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 39075474 39075474 + Frame_Shift_Del DEL C C - novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf DOPEY2 9980 broad.mit.edu 37 21 37653892 37653892 + Missense_Mutation SNP A C C novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf ECT2 1894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 172480526 172480526 + Missense_Mutation SNP T T C novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf EEA1 8411 hgsc.bcm.edu;ucsc.edu 37 12 93205170 93205170 + Frame_Shift_Del DEL G G - novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf ELP3 55140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 27970578 27970578 + Missense_Mutation SNP G G A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf ERAL1 26284 hgsc.bcm.edu 37 17 27182058 27182059 + Frame_Shift_Ins INS - - G novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf FANCI 55215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89837084 89837084 + Missense_Mutation SNP T T C novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf FBXL16 146330 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 745593 745593 + Missense_Mutation SNP G G C novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf FCRL4 83417 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 157556209 157556209 + Missense_Mutation SNP G G A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf FGF2 2247 hgsc.bcm.edu;ucsc.edu 37 4 123813456 123813456 + Frame_Shift_Del DEL G G - novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf GOLPH3 64083 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 32126354 32126354 + Missense_Mutation SNP C C A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf GPR126 57211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 142737063 142737063 + Missense_Mutation SNP G G T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf IKBKG 8517 broad.mit.edu 37 X 153770607 153770607 + Silent SNP G T T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf INTS1 26173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 1539240 1539240 + Missense_Mutation SNP C C T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf ITGB1 3688 hgsc.bcm.edu 37 10 33199253 33199258 + In_Frame_Del DEL CAGGAT CAGGAT - novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 CAGGAT CAGGAT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf KANK3 256949 broad.mit.edu 37 19 8398950 8398961 + In_Frame_Del DEL TCGCTGTCGCCA - - rs111751275 bycluster;by1000genomes TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 TCGCTGTCGCCA TCGCTGTCGCCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf KDELR2 11014 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 6502730 6502730 + Missense_Mutation SNP C C G novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf KIF21B 23046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200954092 200954092 + Missense_Mutation SNP T T A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf KLRC1 3821 broad.mit.edu;hgsc.bcm.edu 37 12 10599220 10599220 + Missense_Mutation SNP A A C novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf LIFR 3977 broad.mit.edu;hgsc.bcm.edu 37 5 38484964 38484964 + Missense_Mutation SNP C C A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf MALAT1 378938 broad.mit.edu;hgsc.bcm.edu 37 11 65266030 65266030 + RNA SNP C C G novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf MAP3K7 6885 broad.mit.edu;hgsc.bcm.edu 37 6 91228282 91228282 + Splice_Site SNP C C A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf MBD4 8930 hgsc.bcm.edu 37 3 129152947 129152950 + Frame_Shift_Del DEL TTCT TTCT - novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 TTCT TTCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf MMEL1 79258 broad.mit.edu;hgsc.bcm.edu 37 1 2530196 2530196 + Missense_Mutation SNP G G C novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf NICN1 84276 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49466658 49466658 + Silent SNP C C T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf OPTC 26254 broad.mit.edu;hgsc.bcm.edu 37 1 203465362 203465362 + Missense_Mutation SNP G G A rs140125203 TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52598242 52598242 + Missense_Mutation SNP A A C novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf PDE4B 5142 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 66798124 66798124 + Missense_Mutation SNP G G A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf PGLYRP2 114770 broad.mit.edu;hgsc.bcm.edu 37 19 15587107 15587107 + Missense_Mutation SNP A A T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf PLEKHA2 59339 hgsc.bcm.edu 37 8 38827186 38827186 + Frame_Shift_Del DEL C C - rs139752038 bycluster;by1000genomes TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf PROX1 5629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 214170133 214170133 + Missense_Mutation SNP G G A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf PTPRZ1 5803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 121653811 121653811 + Missense_Mutation SNP G G A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf PXDNL 137902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 52359592 52359592 + Silent SNP C C A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf RNF43 54894 hgsc.bcm.edu 37 17 56435751 56435752 + Frame_Shift_Ins INS - - G novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf RPS21 6227 hgsc.bcm.edu 37 20 60962917 60962918 + Frame_Shift_Ins INS - - G novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf SETD2 29072 broad.mit.edu;hgsc.bcm.edu 37 3 47059132 47059132 + Missense_Mutation SNP C C T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf SETMAR 6419 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 4355062 4355062 + Missense_Mutation SNP A A G novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf SPG11 80208 hgsc.bcm.edu 37 15 44858098 44858099 + Frame_Shift_Ins INS - - G novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf SULF1 23213 hgsc.bcm.edu;ucsc.edu 37 8 70515859 70515861 + In_Frame_Del DEL AAT AAT - novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 AAT AAT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf THAP9 79725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83839153 83839153 + Silent SNP C C T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf TLR7 51284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 12906241 12906241 + Missense_Mutation SNP C C T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf TPTE2 93492 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 20039633 20039633 + Missense_Mutation SNP C C G novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf TRPV5 56302 broad.mit.edu;hgsc.bcm.edu 37 7 142626641 142626641 + Silent SNP G G A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf TTC15 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 3391616 3391616 + Silent SNP C C T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179399168 179399168 + Silent SNP C C T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf Unknown 0 broad.mit.edu 37 7 39873259 39873259 + Missense_Mutation SNP C A A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf Unknown 0 broad.mit.edu 37 9 68413567 68413567 + RNA DEL G - - novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf WDR36 134430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 110428228 110428228 + Missense_Mutation SNP A A T novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf WSCD1 23302 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 6021491 6021491 + Missense_Mutation SNP G G A rs112285134 by1000genomes TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf XRCC6BP1 91419 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 58340855 58340855 + Missense_Mutation SNP C C A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf ZCCHC6 79670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 88938317 88938317 + Missense_Mutation SNP G G A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf ZMIZ2 83637 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 44805139 44805139 + Missense_Mutation SNP C C A novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf ZNF493 284443 broad.mit.edu;hgsc.bcm.edu 37 19 21607620 21607620 + Missense_Mutation SNP A A G novel TCGA-A3-3311-01A-01D-0966-08 TCGA-A3-3311-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9c095b70-9a64-48b0-8a1c-45dd00a70019 9ac1d3b4-17a7-43dd-85fc-e52fb82fe7bf