Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA9 10350 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 67023934 67023934 + Silent SNP G G A novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 ABCC9 10060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 22015946 22015946 + Missense_Mutation SNP C C A novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 ACOX3 8310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 8416611 8416611 + Silent SNP G G A novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 ATG4C 84938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 63300488 63300488 + Missense_Mutation SNP T T G novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 CCBE1 147372 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 57103282 57103282 + Missense_Mutation SNP C C T novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 CELF6 60677 broad.mit.edu;ucsc.edu 37 15 72597100 72597100 + Missense_Mutation SNP A C C novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 CYP2C8 1558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 96805619 96805619 + Silent SNP G G A novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 EIF6 3692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33872048 33872048 + Missense_Mutation SNP G G C novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 FBLN7 129804 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 112944841 112944841 + Missense_Mutation SNP G G A novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 GBF1 8729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 104129688 104129688 + Missense_Mutation SNP G G T novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 KRT78 196374 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53242514 53242514 + Silent SNP C C T novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 MAP3K9 4293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 71267589 71267589 + Silent SNP G G A novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 MYLK3 91807 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 46781877 46781877 + Missense_Mutation SNP C C T rs143624767 TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 NCOA3 8202 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 46252829 46252829 + Splice_Site SNP T T C novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 NOD2 64127 hgsc.bcm.edu;ucsc.edu 37 16 50763736 50763736 + Missense_Mutation SNP A A T novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 OR2G2 81470 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247752195 247752195 + Silent SNP T T C novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52598238 52598238 + Frame_Shift_Del DEL C C - novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C C - C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 PBX3 5090 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 128724472 128724472 + Silent SNP C C T novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 PCDHB1 29930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140431290 140431290 + Missense_Mutation SNP C C A novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 PFDN6 10471 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33257668 33257668 + Missense_Mutation SNP A A G novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 PLA2G4F 255189 hgsc.bcm.edu;ucsc.edu 37 15 42434287 42434287 + Silent SNP C C T novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 PRSS16 10279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 27222582 27222582 + Missense_Mutation SNP G G A novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 RAPGEF2 9693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 160260314 160260314 + Missense_Mutation SNP G G A novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 RFPL4B 442247 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 112671198 112671198 + Silent SNP T T C novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 RICTOR 253260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 38950756 38950756 + Missense_Mutation SNP T T C novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 SPON2 10417 hgsc.bcm.edu;ucsc.edu 37 4 1161269 1161270 + Frame_Shift_Ins INS - - T novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 SPRYD4 283377 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56863103 56863103 + Nonsense_Mutation SNP G G A novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 SRP68 6730 broad.mit.edu;hgsc.bcm.edu 37 17 74041394 74041394 + Missense_Mutation SNP G G T novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 THNSL1 79896 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 25312229 25312229 + Missense_Mutation SNP A A G novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 TOMM34 10953 hgsc.bcm.edu;ucsc.edu 37 20 43572209 43572210 + In_Frame_Ins INS - - TTA novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 TRIM55 84675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 67064733 67064733 + Missense_Mutation SNP A A C novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 TRPV1 7442 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3486632 3486632 + Silent SNP C C T novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 TSNARE1 203062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 143310906 143310906 + Missense_Mutation SNP G G A novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 UNC45A 55898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 91478784 91478784 + Missense_Mutation SNP T T A novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 VAV2 7410 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 136674238 136674238 + Missense_Mutation SNP T T A novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188202 10188212 + Frame_Shift_Del DEL CCTTTGGCTCT CCTTTGGCTCT - novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 CCTTTGGCTCT CCTTTGGCTCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 XYLT2 64132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48432223 48432223 + Missense_Mutation SNP C C A novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 ZBTB10 65986 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 81411971 81411971 + Silent SNP T T C novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 ZBTB38 253461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 141163046 141163046 + Nonsense_Mutation SNP C C T novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 C15orf21 0 broad.mit.edu 37 15 45848224 45848224 + RNA SNP G T T novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 COL5A3 50509 broad.mit.edu 37 19 10073521 10073521 + Missense_Mutation SNP A T T novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 KIAA0907 22889 broad.mit.edu 37 1 155887399 155887399 + Missense_Mutation SNP T G G novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 MUC6 4588 broad.mit.edu 37 11 1025856 1025856 + Silent SNP G T T novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370 ZNF23 7571 broad.mit.edu 37 16 71487199 71487199 + Missense_Mutation SNP A T T novel TCGA-CZ-5989-01A-11D-1669-08 TCGA-CZ-5989-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 852e1614-35c0-4ba7-a29c-e8e2a91aa1b7 4848f879-d959-44d1-8732-e7817c136370