Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA13 154664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 48314043 48314043 + Missense_Mutation SNP G G A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 ACOT9 23597 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 23754070 23754070 + Silent SNP G G A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 ACSBG1 23205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 78526760 78526760 + Silent SNP G G A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 ADAM10 102 broad.mit.edu;ucsc.edu 37 15 58925453 58925453 + Missense_Mutation SNP G T T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 AFAP1 60312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 7783208 7783208 + Silent SNP C C A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 AKNA 80709 broad.mit.edu;ucsc.edu 37 9 117139678 117139678 + Missense_Mutation SNP C T T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 AMPH 273 broad.mit.edu;ucsc.edu 37 7 38431539 38431539 + Missense_Mutation SNP G A A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 ANKRD11 29123 hgsc.bcm.edu;ucsc.edu 37 16 89349043 89349043 + Frame_Shift_Del DEL C C - novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 ANKRD34B 340120 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 79855596 79855596 + Missense_Mutation SNP G G T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 ANO1 55107 hgsc.bcm.edu;ucsc.edu 37 11 70017025 70017025 + Missense_Mutation SNP G G A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 ASCC3 10973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 101110412 101110412 + Missense_Mutation SNP C C T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 BARD1 580 broad.mit.edu;hgsc.bcm.edu 37 2 215632207 215632207 + Missense_Mutation SNP C C T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 BCL9 607 broad.mit.edu;ucsc.edu 37 1 147091598 147091598 + Missense_Mutation SNP C G G novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 BIRC2 329 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 102221673 102221673 + Missense_Mutation SNP A A G novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 C11orf41 0 hgsc.bcm.edu;ucsc.edu 37 11 33565134 33565134 + Silent SNP C C T rs78046896 bycluster;by1000genomes TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 C20orf114 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31873889 31873889 + Missense_Mutation SNP C C A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 CA10 56934 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 50149723 50149723 + Missense_Mutation SNP C C T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 CABIN1 23523 hgsc.bcm.edu 37 22 24483439 24483440 + Frame_Shift_Ins INS - - C novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 CHD7 55636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 61732614 61732614 + Missense_Mutation SNP A A T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 COL5A3 50509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10116391 10116391 + Splice_Site SNP C C T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 CPXM2 119587 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 125526488 125526488 + Splice_Site SNP C C T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 CTNS 1497 broad.mit.edu;ucsc.edu 37 17 3563239 3563239 + Missense_Mutation SNP C A A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 CXCR6 10663 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 45988547 45988547 + Missense_Mutation SNP C C T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 DDB1 1642 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61081631 61081631 + Silent SNP T T A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 DDB1 1642 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61081632 61081632 + Missense_Mutation SNP C C T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 DISP1 84976 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 223179160 223179160 + Missense_Mutation SNP G G T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 DMRT3 58524 hgsc.bcm.edu;ucsc.edu 37 9 990589 990589 + Nonsense_Mutation SNP C C T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 ECHDC3 79746 broad.mit.edu;ucsc.edu 37 10 11797428 11797428 + Missense_Mutation SNP C G G novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 EPHA5 2044 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 66197808 66197808 + Missense_Mutation SNP G G T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 ETV1 2115 broad.mit.edu;ucsc.edu 37 7 13975450 13975450 + Missense_Mutation SNP G A A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 FAM70B 0 broad.mit.edu;hgsc.bcm.edu 37 13 114514719 114514719 + Missense_Mutation SNP G G A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 HACE1 57531 broad.mit.edu;ucsc.edu 37 6 105233140 105233140 + Nonsense_Mutation SNP C A A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 HMCN1 83872 broad.mit.edu;ucsc.edu 37 1 185953431 185953431 + Missense_Mutation SNP C T T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 IL20RB 53833 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 136710849 136710849 + Missense_Mutation SNP T T C novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 INSRR 3645 broad.mit.edu;ucsc.edu 37 1 156812296 156812296 + Missense_Mutation SNP C T T rs138327752 bycluster;byfrequency;by1000genomes TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 INTU 27152 broad.mit.edu;ucsc.edu 37 4 128632123 128632123 + Missense_Mutation SNP C A A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 KAT2B 8850 hgsc.bcm.edu 37 3 20113852 20113853 + Frame_Shift_Ins INS - - G novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 KIF4B 285643 broad.mit.edu;hgsc.bcm.edu 37 5 154394373 154394373 + Silent SNP C C T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 KLF8 11279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 56292017 56292017 + Silent SNP T T C novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 LAMA2 3908 hgsc.bcm.edu;ucsc.edu 37 6 129419358 129419358 + Frame_Shift_Del DEL C C - novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 LOXHD1 125336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 44114312 44114312 + Missense_Mutation SNP G G T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 LTBP4 8425 hgsc.bcm.edu;ucsc.edu 37 19 41129556 41129556 + Frame_Shift_Del DEL G G - novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 MYCBP2 23077 hgsc.bcm.edu 37 13 77714290 77714290 + Frame_Shift_Del DEL T T - novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 NCKAP5 344148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 133540313 133540313 + Silent SNP G G A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 NOV 4856 broad.mit.edu;ucsc.edu 37 8 120435157 120435157 + Missense_Mutation SNP T A A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 PCDH7 5099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 30724917 30724917 + Missense_Mutation SNP G G T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 PCNX 22990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 71514655 71514655 + Missense_Mutation SNP A A C novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 PIK3CG 5294 broad.mit.edu;ucsc.edu 37 7 106509653 106509653 + Missense_Mutation SNP C A A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 PITPNB 23760 hgsc.bcm.edu;ucsc.edu 37 22 28256199 28256199 + Frame_Shift_Del DEL G G - novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 PLXNA4 91584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 131982903 131982903 + Missense_Mutation SNP C C A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 PRPF19 27339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60671329 60671329 + Silent SNP A A T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 PTPRT 11122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 40713330 40713330 + Silent SNP G G T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 RAPGEF3 10411 broad.mit.edu;ucsc.edu 37 12 48137448 48137448 + Missense_Mutation SNP T C C novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 RASA1 5921 broad.mit.edu;hgsc.bcm.edu 37 5 86564707 86564707 + Missense_Mutation SNP G G A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 RGL1 23179 broad.mit.edu;ucsc.edu 37 1 183891372 183891372 + Missense_Mutation SNP A G G novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 SEC23A 10484 hgsc.bcm.edu;ucsc.edu 37 14 39502467 39502467 + Frame_Shift_Del DEL T T - novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 SFTPD 6441 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 81702178 81702178 + Silent SNP G G A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 SLC9A4 389015 broad.mit.edu;ucsc.edu 37 2 103120043 103120043 + Missense_Mutation SNP T A A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 SPTA1 6708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158618345 158618345 + Missense_Mutation SNP C C T rs148714399 by1000genomes TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 SYK 6850 broad.mit.edu;ucsc.edu 37 9 93636536 93636536 + Silent SNP G A A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 TMEM71 137835 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 133764200 133764200 + Missense_Mutation SNP C C T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 TMPRSS11D 9407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 68725379 68725379 + Missense_Mutation SNP G G A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 TRAPPC10 7109 broad.mit.edu;ucsc.edu 37 21 45513966 45513966 + Missense_Mutation SNP T C C rs142768361 TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179406075 179406075 + Missense_Mutation SNP T T A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 TTN 7273 broad.mit.edu;ucsc.edu 37 2 179516238 179516238 + Silent SNP A T T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 UBR2 23304 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 42637945 42637945 + Missense_Mutation SNP T T A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 WDR65 149465 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 43647495 43647495 + Missense_Mutation SNP G G T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 ZAN 7455 hgsc.bcm.edu;ucsc.edu 37 7 100386875 100386875 + Frame_Shift_Del DEL A A - novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 ZNF24 7572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 32919802 32919802 + Missense_Mutation SNP T T A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 C9orf144 0 broad.mit.edu 37 9 34834304 34834304 + Silent SNP C T T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 DMP1 1758 broad.mit.edu 37 4 88583134 88583134 + Silent SNP C T T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 FAM92A3 0 broad.mit.edu 37 4 183960484 183960484 + RNA DEL A - - novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 GREB1L 80000 broad.mit.edu 37 18 19076571 19076571 + Silent SNP A G G novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 GTF2I 2969 broad.mit.edu 37 7 74167453 74167453 + Missense_Mutation SNP T A A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 MUC4 4585 broad.mit.edu 37 3 195505839 195505839 + Silent SNP A T T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 MUC4 4585 broad.mit.edu 37 3 195506839 195506839 + Missense_Mutation SNP G T T novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 MUC4 4585 broad.mit.edu 37 3 195515290 195515290 + Missense_Mutation SNP C G G rs78535324 bycluster TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10 ZFAT 57623 broad.mit.edu 37 8 135521987 135521987 + Nonsense_Mutation SNP G A A novel TCGA-CZ-5462-01A-01D-1501-10 TCGA-CZ-5462-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 74eed0c6-b3cc-4666-8ef0-194e1bbe1048 58ebedb1-02e5-437b-b5ec-c463a50b1f10