Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACE 1636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61559982 61559982 + Missense_Mutation SNP C C T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e ACP6 51205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 147124277 147124277 + Silent SNP A A G novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e ACSS3 79611 broad.mit.edu;ucsc.edu 37 12 81647354 81647354 + Nonsense_Mutation SNP C T T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e AGT 183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 230839961 230839961 + Missense_Mutation SNP T T C novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e AKR7L 246181 hgsc.bcm.edu 37 1 19597275 19597275 + Frame_Shift_Del DEL C C - rs140586925 TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e APOL5 80831 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 36123236 36123236 + Missense_Mutation SNP C C G novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e ARSG 22901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 66303656 66303656 + Missense_Mutation SNP G G C novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e ATP2C2 9914 hgsc.bcm.edu 37 16 84497252 84497252 + Missense_Mutation SNP G G A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e BAT1 0 hgsc.bcm.edu 37 6 31504445 31504446 + Frame_Shift_Ins INS - - A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e BNIP1 662 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 172578593 172578593 + Missense_Mutation SNP A A T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e CEACAM3 1084 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42301589 42301589 + Missense_Mutation SNP G G A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e CENPF 1063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 214818566 214818566 + Missense_Mutation SNP A A T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e CHSY3 337876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 129520719 129520719 + Missense_Mutation SNP C C G novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e COL24A1 255631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 86289366 86289366 + Splice_Site SNP A A G novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e DCC 1630 broad.mit.edu;ucsc.edu 37 18 50994332 50994332 + Missense_Mutation SNP C A A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e DLD 1738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 107556003 107556003 + Missense_Mutation SNP G G C novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e DNAJC25 548645 broad.mit.edu;hgsc.bcm.edu 37 9 114411754 114411754 + Missense_Mutation SNP T T C novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e DOCK11 139818 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 117700143 117700143 + Missense_Mutation SNP A A T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e DOCK11 139818 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 117819736 117819736 + Missense_Mutation SNP G G A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e DSCAML1 57453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 117647629 117647629 + Silent SNP G G T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e DUOXA2 405753 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45408398 45408398 + Silent SNP C C T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e DUSP21 63904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 44703517 44703517 + Missense_Mutation SNP C C T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e EPPK1 83481 broad.mit.edu;hgsc.bcm.edu 37 8 144941623 144941623 + Silent SNP C C A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e FAT1 2195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 187538911 187538911 + Silent SNP C C A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e FNDC3B 64778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 172060897 172060897 + Missense_Mutation SNP T T G novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e FRMPD2 143162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 49459680 49459680 + Missense_Mutation SNP G G C novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e GALNT13 114805 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 155295210 155295210 + Missense_Mutation SNP G G C novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e GALT 2592 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 34649524 34649524 + Missense_Mutation SNP T T C novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e GPR78 27201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 8588871 8588871 + Silent SNP G G A rs148589120 TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e HIF1A 3091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 62187224 62187224 + Missense_Mutation SNP C C A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e IFIT2 3433 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 91066668 91066668 + Missense_Mutation SNP G G T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e IFNA14 3448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 21239700 21239700 + Missense_Mutation SNP C C A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e ISCU 23479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 108960983 108960983 + Silent SNP T T C novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e ISL1 3670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 50685733 50685733 + Silent SNP G G A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e KDM2A 22992 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 67017906 67017906 + Missense_Mutation SNP C C T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e KIAA1432 57589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 5763502 5763502 + Silent SNP G G A rs149258225 TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e KIAA2022 340533 broad.mit.edu;ucsc.edu 37 X 73961521 73961521 + Missense_Mutation SNP T A A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e LLGL1 3996 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18135884 18135884 + Silent SNP C C T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e MACF1 23499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 39715714 39715714 + Missense_Mutation SNP A A G novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e MED18 54797 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 28661233 28661233 + Missense_Mutation SNP C C G novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e MMGT1 93380 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 135047254 135047254 + Missense_Mutation SNP A A T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e MRE11A 4361 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 94169018 94169018 + Silent SNP G G A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e MSH4 4438 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 76269428 76269428 + Missense_Mutation SNP G G T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e MYLK2 85366 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 30418677 30418677 + Missense_Mutation SNP T T G novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e NDST1 3340 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149932854 149932854 + Missense_Mutation SNP T T C novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e NEU1 4758 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 31828358 31828358 + Missense_Mutation SNP C C T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e NGB 58157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 77733013 77733013 + Missense_Mutation SNP T T A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e NNT 23530 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 43615986 43615986 + Missense_Mutation SNP C C T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e NPPB 4879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11918768 11918768 + Silent SNP G G A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e OSGIN2 734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 90937536 90937536 + Missense_Mutation SNP A A G novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e PBRM1 55193 broad.mit.edu;hgsc.bcm.edu 37 3 52610715 52610715 + Splice_Site SNP C C G novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C C G C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e PDZD2 23037 broad.mit.edu;hgsc.bcm.edu 37 5 32000300 32000300 + Missense_Mutation SNP G G A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e PIK3CA 5290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 178936091 178936091 + Missense_Mutation SNP G G A rs104886003 bycluster TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e PLOD2 5352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 145799589 145799589 + Missense_Mutation SNP A A T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e PLXND1 23129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 129276046 129276046 + Silent SNP G G T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e POP7 10248 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100304462 100304462 + Missense_Mutation SNP A A C novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e PTK2 5747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 141712777 141712777 + Silent SNP G G T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e PTPDC1 138639 broad.mit.edu;ucsc.edu 37 9 96859671 96859671 + Missense_Mutation SNP C T T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e RBM46 166863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 155719349 155719349 + Missense_Mutation SNP A A G novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e RLBP1 6017 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89760467 89760467 + Missense_Mutation SNP C C T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e SAMD9 54809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92734661 92734661 + Silent SNP G G A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e SH3BP4 23677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 235950115 235950115 + Silent SNP G G A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e SLC12A6 9990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 34547536 34547536 + Missense_Mutation SNP A A G novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e SLC14A2 8170 hgsc.bcm.edu 37 18 43246952 43246952 + Missense_Mutation SNP C C A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e SLC14A2 8170 hgsc.bcm.edu;ucsc.edu 37 18 43246949 43246949 + Frame_Shift_Del DEL T T - novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e SLC8A3 6547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 70633462 70633462 + Missense_Mutation SNP C C T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e SMCR8 140775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18220787 18220787 + Missense_Mutation SNP A A C novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e SOX4 6659 broad.mit.edu;hgsc.bcm.edu 37 6 21595027 21595027 + Missense_Mutation SNP G G A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e SPIN3 169981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 57020876 57020876 + Missense_Mutation SNP C C G novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e SS18 6760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 23619298 23619298 + Missense_Mutation SNP T T C novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e STRN 6801 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 37088370 37088370 + Missense_Mutation SNP C C T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e TMEM31 203562 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 102968576 102968576 + Nonsense_Mutation SNP C C T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e TRANK1 9881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 36899166 36899166 + Missense_Mutation SNP C C T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e USP40 55230 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234429716 234429716 + Missense_Mutation SNP A A C novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e VCPIP1 80124 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 67546928 67546928 + Silent SNP T T C novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e VEPH1 79674 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 157031465 157031465 + Missense_Mutation SNP C C T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e VHL 7428 broad.mit.edu;ucsc.edu 37 3 10188290 10188290 + Nonsense_Mutation SNP C T T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e WDR91 29062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 134889161 134889161 + Silent SNP A A G novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e XIRP2 129446 hgsc.bcm.edu;ucsc.edu 37 2 168101553 168101553 + Missense_Mutation SNP G G C novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e YTHDF2 51441 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 29069170 29069170 + Missense_Mutation SNP G G A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e ZC3H3 23144 hgsc.bcm.edu 37 8 144522386 144522387 + In_Frame_Ins INS - - GAG rs35759992 alternate_allele TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e ZNF883 169834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 115759684 115759684 + Missense_Mutation SNP T T G novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e CREB5 9586 broad.mit.edu 37 7 28610069 28610069 + Silent SNP C T T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e GOLGA6L5 374650 broad.mit.edu 37 15 85053142 85053142 + RNA SNP C T T rs919418 TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e LILRB4 11006 broad.mit.edu 37 19 55176277 55176277 + Missense_Mutation SNP C T T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e LOC650293 650293 broad.mit.edu 37 4 8951518 8951518 + Silent SNP G T T novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e MXRA8 54587 broad.mit.edu 37 1 1289294 1289294 + Missense_Mutation SNP T A A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e MYLK 4638 broad.mit.edu 37 3 123376191 123376191 + Missense_Mutation SNP T A A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e PLXNA1 5361 broad.mit.edu 37 3 126707544 126707544 + Silent SNP T G G novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e RACGAP1P 83956 broad.mit.edu 37 12 45458035 45458035 + RNA SNP C A A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e SMAP1 60682 broad.mit.edu 37 6 71508370 71508370 + Frame_Shift_Del DEL A - - novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e ZNF793 390927 broad.mit.edu 37 19 38027920 38027920 + Silent SNP G A A novel TCGA-CJ-6033-01A-11D-1669-08 TCGA-CJ-6033-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c7ce9042-f63c-4a93-a82d-f21977bd9bcb 6ddcf971-b6b2-4ea9-a14e-22451f4b519e