Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACER1 125981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6309756 6309756 + Missense_Mutation SNP T T A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 ADAMTS18 170692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 77353974 77353974 + Silent SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 ALMS1P 200420 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 73900989 73900989 + RNA SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 APOO 79135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 23874429 23874429 + Missense_Mutation SNP T T A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 BBS12 166379 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 123664977 123664977 + Missense_Mutation SNP A A C novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 BCL2L12 83596 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50169188 50169188 + Silent SNP G G T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 BSCL2 26580 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62472858 62472858 + Missense_Mutation SNP A A T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 C12orf10 60314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53700059 53700059 + Silent SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 C16orf62 57020 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 19613023 19613023 + Silent SNP G G T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 C9orf144B 0 broad.mit.edu;hgsc.bcm.edu 37 9 34724109 34724109 + Missense_Mutation SNP A A G novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 CCDC108 255101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219888914 219888914 + Missense_Mutation SNP C C A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 CDK5RAP1 51654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31958402 31958402 + Missense_Mutation SNP A A T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 CFH 3075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 196684863 196684863 + Missense_Mutation SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 CFTR 1080 broad.mit.edu;hgsc.bcm.edu 37 7 117180383 117180383 + Missense_Mutation SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 CNNM4 26504 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 97427956 97427956 + Missense_Mutation SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 COL5A3 50509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10084433 10084433 + Missense_Mutation SNP T T A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 COL6A5 256076 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130174477 130174477 + Missense_Mutation SNP C C A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 COX17 10063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 119393997 119393997 + Missense_Mutation SNP C C A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 CTNNA1 1495 broad.mit.edu;ucsc.edu 37 5 138261073 138261073 + Silent SNP A C C novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 DENND4A 10260 broad.mit.edu;ucsc.edu 37 15 66023980 66023980 + Missense_Mutation SNP C T T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 DMRTA1 63951 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 22451073 22451073 + Missense_Mutation SNP G G T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 DNAH2 146754 broad.mit.edu;hgsc.bcm.edu 37 17 7722587 7722587 + Missense_Mutation SNP T T A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 ERMN 57471 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 158182140 158182140 + Silent SNP C C T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 ESF1 51575 broad.mit.edu;ucsc.edu 37 20 13750637 13750637 + Silent SNP A G G novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 EYA4 2070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 133844277 133844277 + Missense_Mutation SNP C C T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 FLT1 2321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 28913320 28913320 + Nonsense_Mutation SNP C C A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 FNDC7 163479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109280146 109280146 + Missense_Mutation SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 FRAS1 80144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 79308552 79308552 + Missense_Mutation SNP A A T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 GDAP2 54834 broad.mit.edu;ucsc.edu 37 1 118426150 118426150 + Missense_Mutation SNP A G G novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 GKN2 200504 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 69177365 69177365 + Missense_Mutation SNP C C A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 GPT2 84706 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 46958369 46958369 + Silent SNP C C T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 GSN 2934 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 124072995 124072995 + Missense_Mutation SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 GTF3C2 2976 broad.mit.edu;ucsc.edu 37 2 27565792 27565792 + Missense_Mutation SNP G A A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 HAUS7 55559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 152721103 152721103 + Missense_Mutation SNP T T C novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 HECW2 57520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 197184391 197184391 + Missense_Mutation SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 HS3ST5 222537 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 114383925 114383925 + Missense_Mutation SNP C C T rs144143119 byfrequency TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 IL16 3603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 81552201 81552201 + Missense_Mutation SNP G G T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 ITIH5 80760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 7682816 7682816 + Missense_Mutation SNP A A C novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 KCNA4 3739 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 30034211 30034211 + Missense_Mutation SNP C C A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 KCNAB1 7881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 156175241 156175241 + Splice_Site SNP G G T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 KIAA1429 25962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 95531232 95531232 + Missense_Mutation SNP A A G novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 KIAA1429 25962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 95538745 95538745 + Missense_Mutation SNP T T G novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 KLRC2 3822 broad.mit.edu;hgsc.bcm.edu 37 12 10584769 10584770 + Frame_Shift_Ins INS - - AA novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 LEPREL4 10609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39967279 39967279 + Missense_Mutation SNP A A T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 LRRC7 57554 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 70518807 70518807 + Silent SNP T T C novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 LYST 1130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 235969775 235969775 + Silent SNP C C T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 MAGEA11 4110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 148797543 148797543 + Missense_Mutation SNP C C A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 MAP3K5 4217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 136923035 136923035 + Missense_Mutation SNP G G C novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 MCOLN1 57192 hgsc.bcm.edu;ucsc.edu 37 19 7589957 7589957 + Frame_Shift_Del DEL T T - novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 MECOM 2122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 168833688 168833688 + Missense_Mutation SNP C C A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 MED13L 23389 broad.mit.edu;ucsc.edu 37 12 116429263 116429263 + Missense_Mutation SNP C A A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 MUC4 4585 hgsc.bcm.edu 37 3 195506271 195506318 + In_Frame_Del DEL ACCTGTGGATAATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTC ACCTGTGGATAATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTC - novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 ACCTGTGGATAATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTC ACCTGTGGATAATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 NAT8 9027 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 73868603 73868603 + Silent SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 NLRP13 126204 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56443398 56443398 + Missense_Mutation SNP G G T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 NRP2 8828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 206580920 206580920 + Silent SNP T T C novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 OGDH 4967 broad.mit.edu;ucsc.edu 37 7 44664056 44664056 + Silent SNP G T T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 OR10S1 219873 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 123847986 123847986 + Missense_Mutation SNP A A T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 OR4C3 256144 broad.mit.edu;hgsc.bcm.edu 37 11 48346714 48346714 + Missense_Mutation SNP C C G novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 OR8J3 81168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55904652 55904652 + Missense_Mutation SNP A A C novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 PAGE3 139793 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 55286975 55286975 + RNA SNP G G C novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 PCDHB3 56132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140481311 140481311 + Missense_Mutation SNP T T G novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 PCNT 5116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 47850087 47850087 + Silent SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 PDHB 5162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 58416621 58416621 + Nonsense_Mutation SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 PHF20 51230 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 34459576 34459576 + Missense_Mutation SNP G G T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 RAB1A 5861 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 65316108 65316108 + Missense_Mutation SNP T T C novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 RARB 5915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 25636158 25636158 + Missense_Mutation SNP T T C novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 RNF121 55298 broad.mit.edu;ucsc.edu 37 11 71707272 71707272 + Missense_Mutation SNP C A A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 RNF128 79589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 105970595 105970595 + Frame_Shift_Del DEL C C - novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 RNF43 54894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56435542 56435542 + Missense_Mutation SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 SATB2 23314 broad.mit.edu;ucsc.edu 37 2 200245089 200245089 + Nonsense_Mutation SNP G A A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 SCYL2 55681 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100732421 100732421 + Missense_Mutation SNP T T C novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 SF3B1 23451 broad.mit.edu;ucsc.edu 37 2 198257832 198257832 + Missense_Mutation SNP G A A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 SIN3B 23309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 16977286 16977286 + Missense_Mutation SNP G G T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 SLC36A2 153201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150701632 150701632 + Silent SNP A A G novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 SORBS2 8470 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 186548090 186548090 + Missense_Mutation SNP C C T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 SP4 6671 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 21469813 21469813 + Missense_Mutation SNP A A G novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 SPTBN2 6712 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66483388 66483388 + Silent SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 SVEP1 79987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 113312161 113312161 + Missense_Mutation SNP A A G novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 TAF1 6872 broad.mit.edu;hgsc.bcm.edu 37 X 70603945 70603945 + Missense_Mutation SNP A A G novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 TANC1 85461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160080760 160080760 + Silent SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 TM7SF3 51768 broad.mit.edu;ucsc.edu 37 12 27156169 27156169 + Silent SNP C T T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 TMEM102 284114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7340067 7340067 + Missense_Mutation SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 TXNDC5 81567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7883469 7883469 + Nonsense_Mutation SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 U2AF2 11338 hgsc.bcm.edu;ucsc.edu 37 19 56185308 56185310 + In_Frame_Del DEL GGA GGA - novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 GGA GGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 USP9Y 8287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 Y 14850172 14850172 + Nonsense_Mutation SNP A A T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 VARS 7407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 31752061 31752061 + Missense_Mutation SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10191648 10191648 + Missense_Mutation SNP G G T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 VPS11 55823 broad.mit.edu;ucsc.edu 37 11 118938631 118938631 + Missense_Mutation SNP C G G novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 VSIG8 391123 hgsc.bcm.edu;ucsc.edu 37 1 159828569 159828572 + Frame_Shift_Del DEL CTCG CTCG - novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 CTCG CTCG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 YLPM1 56252 hgsc.bcm.edu;ucsc.edu 37 14 75287773 75287773 + Frame_Shift_Del DEL A A - novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 ZFAND2B 130617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220072990 220072990 + Silent SNP C C A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 ZMYM1 79830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 35579833 35579833 + Missense_Mutation SNP A A C novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 ZNF354B 117608 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 178309752 178309752 + Missense_Mutation SNP A A T novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 ZNF57 126295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2917051 2917051 + Missense_Mutation SNP G G C novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 ZNF780B 163131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40540306 40540306 + Silent SNP G G A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 RAB11FIP5 26056 broad.mit.edu 37 2 73315745 73315745 + Missense_Mutation SNP G A A novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 SEMA4D 10507 broad.mit.edu 37 9 91994191 91994191 + Silent SNP A G G novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 STK36 27148 broad.mit.edu 37 2 219557312 219557312 + Missense_Mutation SNP C T T rs145717046 TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 Unknown 0 broad.mit.edu 37 10 11715686 11715686 + RNA SNP T C C novel TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323 Unknown 0 broad.mit.edu 37 3 195427029 195427029 + RNA DEL T - - rs145225726 TCGA-CJ-5672-01A-11D-1534-10 TCGA-CJ-5672-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 61497c42-78f2-43d4-b2ab-2b1e655271a8 495879a9-ed52-43a8-99ea-37ca7008c323